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Search of human proteins with 239744629
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo
sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750323 PREDICTED: hypothetical protein XP_002347363 [Homo ... 209 4e-55
gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo ... 209 4e-55
gi|169204760 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|169205546 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|169204158 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|239755822 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239750319 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239744623 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|4506685 ribosomal protein S13 [Homo sapiens] 27 3.4
gi|87196600 polyserase 3 [Homo sapiens] 27 4.5
gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [... 26 7.7
>gi|239750323 PREDICTED: hypothetical protein XP_002347363 [Homo
sapiens]
Length = 104
Score = 209 bits (532), Expect = 4e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60
MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK
Sbjct: 1 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60
Query: 61 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104
TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL
Sbjct: 61 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104
>gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo
sapiens]
Length = 104
Score = 209 bits (532), Expect = 4e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60
MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK
Sbjct: 1 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60
Query: 61 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104
TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL
Sbjct: 61 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104
>gi|169204760 PREDICTED: hypothetical protein [Homo sapiens]
Length = 498
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 36 AIHYPAGGGL-LDGLHGVAAVQGITKTKVLAI-FQQAAVGGDLSLQLDLDVQQGLILLGL 93
A+H A GL L G + V+ + +V+ I + QA VGGDL +Q L + Q L+L L
Sbjct: 344 ALHLHATPGLHLRVWWGGSGVRVVASGEVVPIVYTQAPVGGDLDVQAQLGIHQLLVLAQL 403
Query: 94 ALSLCPGLCQ 103
+ GL Q
Sbjct: 404 PRHVLLGLLQ 413
>gi|169205546 PREDICTED: hypothetical protein [Homo sapiens]
Length = 441
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 36 AIHYPAGGGL-LDGLHGVAAVQGITKTKVLAI-FQQAAVGGDLSLQLDLDVQQGLILLGL 93
A+H A GL L G + V+ + +V+ I + QA VGGDL +Q L + Q L+L L
Sbjct: 287 ALHLHATPGLHLRVWWGGSGVRVVASGEVVPIVYTQAPVGGDLDVQAQLGIHQLLVLAQL 346
Query: 94 ALSLCPGLCQ 103
+ GL Q
Sbjct: 347 PRHVLLGLLQ 356
>gi|169204158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 498
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 36 AIHYPAGGGL-LDGLHGVAAVQGITKTKVLAI-FQQAAVGGDLSLQLDLDVQQGLILLGL 93
A+H A GL L G + V+ + +V+ I + QA VGGDL +Q L + Q L+L L
Sbjct: 344 ALHLHATPGLHLRVWWGGSGVRVVASGEVVPIVYTQAPVGGDLDVQAQLGIHQLLVLAQL 403
Query: 94 ALSLCPGLCQ 103
+ GL Q
Sbjct: 404 PRHVLLGLLQ 413
>gi|239755822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 65 AIFQQAAVGGDLSLQLDLDVQQGLILL----GLALSLCPGLCQL 104
A+ QQ AV GDL +Q L V + L+L + L L GL QL
Sbjct: 103 ALSQQLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQL 146
>gi|239750319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 65 AIFQQAAVGGDLSLQLDLDVQQGLILL----GLALSLCPGLCQL 104
A+ QQ AV GDL +Q L V + L+L + L L GL QL
Sbjct: 103 ALSQQLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQL 146
>gi|239744623 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 65 AIFQQAAVGGDLSLQLDLDVQQGLILL----GLALSLCPGLCQL 104
A+ QQ AV GDL +Q L V + L+L + L L GL QL
Sbjct: 103 ALSQQLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQL 146
>gi|4506685 ribosomal protein S13 [Homo sapiens]
Length = 151
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 16/60 (26%)
Query: 17 ASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITKTKVLAIFQQAAVGGDL 76
A GL P GVI L HGVA V+ +T K+L I + + DL
Sbjct: 41 AKKGLTPSQIGVI----------------LRDSHGVAQVRFVTGNKILRILKSKGLAPDL 84
>gi|87196600 polyserase 3 [Homo sapiens]
Length = 553
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 6 FIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGG 43
FIG P+ + G P+ +G+ L H A +P GG
Sbjct: 343 FIGRQAPEEWSVGLGTRPEEWGLKQLILHGAYTHPEGG 380
>gi|19923830 pre-B-cell leukemia homeobox interacting protein 1
[Homo sapiens]
Length = 731
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 64 LAIFQQAA---VGGDLSLQLDLDVQQGLILLGLALSLCPG 100
LA+ QA GG+L + L++ + L+LLGL + L G
Sbjct: 176 LAVENQAGGEGAGGELGISLNMCLLGALVLLGLGVLLFSG 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.146 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,820,901
Number of Sequences: 37866
Number of extensions: 142574
Number of successful extensions: 330
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 11
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.