Guide to the Human Genome
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Search of human proteins with 239744629

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo
sapiens]
         (104 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750323 PREDICTED: hypothetical protein XP_002347363 [Homo ...   209   4e-55
gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo ...   209   4e-55
gi|169204760 PREDICTED: hypothetical protein [Homo sapiens]            33   0.037
gi|169205546 PREDICTED: hypothetical protein [Homo sapiens]            33   0.037
gi|169204158 PREDICTED: hypothetical protein [Homo sapiens]            33   0.037
gi|239755822 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|239750319 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|239744623 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|4506685 ribosomal protein S13 [Homo sapiens]                        27   3.4  
gi|87196600 polyserase 3 [Homo sapiens]                                27   4.5  
gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [...    26   7.7  

>gi|239750323 PREDICTED: hypothetical protein XP_002347363 [Homo
           sapiens]
          Length = 104

 Score =  209 bits (532), Expect = 4e-55
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60
           MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK
Sbjct: 1   MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60

Query: 61  TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104
           TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL
Sbjct: 61  TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104


>gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo
           sapiens]
          Length = 104

 Score =  209 bits (532), Expect = 4e-55
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60
           MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK
Sbjct: 1   MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60

Query: 61  TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104
           TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL
Sbjct: 61  TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104


>gi|169204760 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 498

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 36  AIHYPAGGGL-LDGLHGVAAVQGITKTKVLAI-FQQAAVGGDLSLQLDLDVQQGLILLGL 93
           A+H  A  GL L    G + V+ +   +V+ I + QA VGGDL +Q  L + Q L+L  L
Sbjct: 344 ALHLHATPGLHLRVWWGGSGVRVVASGEVVPIVYTQAPVGGDLDVQAQLGIHQLLVLAQL 403

Query: 94  ALSLCPGLCQ 103
              +  GL Q
Sbjct: 404 PRHVLLGLLQ 413


>gi|169205546 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 441

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 36  AIHYPAGGGL-LDGLHGVAAVQGITKTKVLAI-FQQAAVGGDLSLQLDLDVQQGLILLGL 93
           A+H  A  GL L    G + V+ +   +V+ I + QA VGGDL +Q  L + Q L+L  L
Sbjct: 287 ALHLHATPGLHLRVWWGGSGVRVVASGEVVPIVYTQAPVGGDLDVQAQLGIHQLLVLAQL 346

Query: 94  ALSLCPGLCQ 103
              +  GL Q
Sbjct: 347 PRHVLLGLLQ 356


>gi|169204158 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 498

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 36  AIHYPAGGGL-LDGLHGVAAVQGITKTKVLAI-FQQAAVGGDLSLQLDLDVQQGLILLGL 93
           A+H  A  GL L    G + V+ +   +V+ I + QA VGGDL +Q  L + Q L+L  L
Sbjct: 344 ALHLHATPGLHLRVWWGGSGVRVVASGEVVPIVYTQAPVGGDLDVQAQLGIHQLLVLAQL 403

Query: 94  ALSLCPGLCQ 103
              +  GL Q
Sbjct: 404 PRHVLLGLLQ 413


>gi|239755822 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 612

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 65  AIFQQAAVGGDLSLQLDLDVQQGLILL----GLALSLCPGLCQL 104
           A+ QQ AV GDL +Q  L V + L+L      + L L  GL QL
Sbjct: 103 ALSQQLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQL 146


>gi|239750319 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 612

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 65  AIFQQAAVGGDLSLQLDLDVQQGLILL----GLALSLCPGLCQL 104
           A+ QQ AV GDL +Q  L V + L+L      + L L  GL QL
Sbjct: 103 ALSQQLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQL 146


>gi|239744623 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 612

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 65  AIFQQAAVGGDLSLQLDLDVQQGLILL----GLALSLCPGLCQL 104
           A+ QQ AV GDL +Q  L V + L+L      + L L  GL QL
Sbjct: 103 ALSQQLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQL 146


>gi|4506685 ribosomal protein S13 [Homo sapiens]
          Length = 151

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 16/60 (26%)

Query: 17 ASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITKTKVLAIFQQAAVGGDL 76
          A  GL P   GVI                L   HGVA V+ +T  K+L I +   +  DL
Sbjct: 41 AKKGLTPSQIGVI----------------LRDSHGVAQVRFVTGNKILRILKSKGLAPDL 84


>gi|87196600 polyserase 3 [Homo sapiens]
          Length = 553

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 6   FIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGG 43
           FIG   P+ +    G  P+ +G+  L  H A  +P GG
Sbjct: 343 FIGRQAPEEWSVGLGTRPEEWGLKQLILHGAYTHPEGG 380


>gi|19923830 pre-B-cell leukemia homeobox interacting protein 1
           [Homo sapiens]
          Length = 731

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 64  LAIFQQAA---VGGDLSLQLDLDVQQGLILLGLALSLCPG 100
           LA+  QA     GG+L + L++ +   L+LLGL + L  G
Sbjct: 176 LAVENQAGGEGAGGELGISLNMCLLGALVLLGLGVLLFSG 215


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.146    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,820,901
Number of Sequences: 37866
Number of extensions: 142574
Number of successful extensions: 330
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 11
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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