BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo sapiens] (104 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239750323 PREDICTED: hypothetical protein XP_002347363 [Homo ... 209 4e-55 gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo ... 209 4e-55 gi|169204760 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037 gi|169205546 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037 gi|169204158 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037 gi|239755822 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0 gi|239750319 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0 gi|239744623 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0 gi|4506685 ribosomal protein S13 [Homo sapiens] 27 3.4 gi|87196600 polyserase 3 [Homo sapiens] 27 4.5 gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [... 26 7.7 >gi|239750323 PREDICTED: hypothetical protein XP_002347363 [Homo sapiens] Length = 104 Score = 209 bits (532), Expect = 4e-55 Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK Sbjct: 1 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60 Query: 61 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL Sbjct: 61 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104 >gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo sapiens] Length = 104 Score = 209 bits (532), Expect = 4e-55 Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK Sbjct: 1 MNSELFIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITK 60 Query: 61 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL Sbjct: 61 TKVLAIFQQAAVGGDLSLQLDLDVQQGLILLGLALSLCPGLCQL 104 >gi|169204760 PREDICTED: hypothetical protein [Homo sapiens] Length = 498 Score = 33.5 bits (75), Expect = 0.037 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 36 AIHYPAGGGL-LDGLHGVAAVQGITKTKVLAI-FQQAAVGGDLSLQLDLDVQQGLILLGL 93 A+H A GL L G + V+ + +V+ I + QA VGGDL +Q L + Q L+L L Sbjct: 344 ALHLHATPGLHLRVWWGGSGVRVVASGEVVPIVYTQAPVGGDLDVQAQLGIHQLLVLAQL 403 Query: 94 ALSLCPGLCQ 103 + GL Q Sbjct: 404 PRHVLLGLLQ 413 >gi|169205546 PREDICTED: hypothetical protein [Homo sapiens] Length = 441 Score = 33.5 bits (75), Expect = 0.037 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 36 AIHYPAGGGL-LDGLHGVAAVQGITKTKVLAI-FQQAAVGGDLSLQLDLDVQQGLILLGL 93 A+H A GL L G + V+ + +V+ I + QA VGGDL +Q L + Q L+L L Sbjct: 287 ALHLHATPGLHLRVWWGGSGVRVVASGEVVPIVYTQAPVGGDLDVQAQLGIHQLLVLAQL 346 Query: 94 ALSLCPGLCQ 103 + GL Q Sbjct: 347 PRHVLLGLLQ 356 >gi|169204158 PREDICTED: hypothetical protein [Homo sapiens] Length = 498 Score = 33.5 bits (75), Expect = 0.037 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 36 AIHYPAGGGL-LDGLHGVAAVQGITKTKVLAI-FQQAAVGGDLSLQLDLDVQQGLILLGL 93 A+H A GL L G + V+ + +V+ I + QA VGGDL +Q L + Q L+L L Sbjct: 344 ALHLHATPGLHLRVWWGGSGVRVVASGEVVPIVYTQAPVGGDLDVQAQLGIHQLLVLAQL 403 Query: 94 ALSLCPGLCQ 103 + GL Q Sbjct: 404 PRHVLLGLLQ 413 >gi|239755822 PREDICTED: hypothetical protein [Homo sapiens] Length = 612 Score = 27.7 bits (60), Expect = 2.0 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Query: 65 AIFQQAAVGGDLSLQLDLDVQQGLILL----GLALSLCPGLCQL 104 A+ QQ AV GDL +Q L V + L+L + L L GL QL Sbjct: 103 ALSQQLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQL 146 >gi|239750319 PREDICTED: hypothetical protein [Homo sapiens] Length = 612 Score = 27.7 bits (60), Expect = 2.0 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Query: 65 AIFQQAAVGGDLSLQLDLDVQQGLILL----GLALSLCPGLCQL 104 A+ QQ AV GDL +Q L V + L+L + L L GL QL Sbjct: 103 ALSQQLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQL 146 >gi|239744623 PREDICTED: hypothetical protein [Homo sapiens] Length = 612 Score = 27.7 bits (60), Expect = 2.0 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Query: 65 AIFQQAAVGGDLSLQLDLDVQQGLILL----GLALSLCPGLCQL 104 A+ QQ AV GDL +Q L V + L+L + L L GL QL Sbjct: 103 ALSQQLAVSGDLHVQGQLGVHELLVLTQQPGHVLLGLLQGLLQL 146 >gi|4506685 ribosomal protein S13 [Homo sapiens] Length = 151 Score = 26.9 bits (58), Expect = 3.4 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 16/60 (26%) Query: 17 ASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITKTKVLAIFQQAAVGGDL 76 A GL P GVI L HGVA V+ +T K+L I + + DL Sbjct: 41 AKKGLTPSQIGVI----------------LRDSHGVAQVRFVTGNKILRILKSKGLAPDL 84 >gi|87196600 polyserase 3 [Homo sapiens] Length = 553 Score = 26.6 bits (57), Expect = 4.5 Identities = 13/38 (34%), Positives = 19/38 (50%) Query: 6 FIGLLLPKGYPASAGLMPQNFGVIGLRHHFAIHYPAGG 43 FIG P+ + G P+ +G+ L H A +P GG Sbjct: 343 FIGRQAPEEWSVGLGTRPEEWGLKQLILHGAYTHPEGG 380 >gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [Homo sapiens] Length = 731 Score = 25.8 bits (55), Expect = 7.7 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Query: 64 LAIFQQAA---VGGDLSLQLDLDVQQGLILLGLALSLCPG 100 LA+ QA GG+L + L++ + L+LLGL + L G Sbjct: 176 LAVENQAGGEGAGGELGISLNMCLLGALVLLGLGVLLFSG 215 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.325 0.146 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,820,901 Number of Sequences: 37866 Number of extensions: 142574 Number of successful extensions: 330 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 323 Number of HSP's gapped (non-prelim): 11 length of query: 104 length of database: 18,247,518 effective HSP length: 75 effective length of query: 29 effective length of database: 15,407,568 effective search space: 446819472 effective search space used: 446819472 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.