Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RPS13 Sequence: fasta or formatted (151aa) NCBI GI: 4506685
Description:

ribosomal protein S13

Referenced in:

Ribosomes
Small RNAs in RNA Processing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         12           1
 C cysteine            0.0          0           0
 D aspartate           4.6          7           2
 E glutamate           3.3          5           1
 F phenylalanine       1.3          2           1
 G glycine             5.3          8           1
 H histidine           3.3          5           1
 I isoleucine          6.0          9           1
 K lysine             11.9         18           2
 L leucine            12.6         19           1
 M methionine          1.3          2           1
 N asparagine          2.0          3           1
 P proline             5.3          8           2
 Q glutamine           2.6          4           1
 R arginine            9.3         14           2
 S serine              7.3         11           2
 T threonine           4.0          6           1
 V valine              6.6         10           1
 W tryptophan          1.3          2           1
 Y tyrosine            4.0          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein S13 
LASS3                 0.015   LAG1 longevity assurance homolog 3 
LOC100291290          0.007   PREDICTED: hypothetical protein XP_002347363 
LOC100288147          0.007   PREDICTED: hypothetical protein XP_002343226 
PAX4                  0.007   paired box 4 
UNC45B                0.007   cardiomyopathy associated 4 isoform 2 
UNC45B                0.007   cardiomyopathy associated 4 isoform 1 
HMHA1                 0.007   minor histocompatibility antigen HA-1 
THAP2                 0.007   THAP domain containing, apoptosis associated protein...
OR4K15                0.007   olfactory receptor, family 4, subfamily K, member 15...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press