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Search of human proteins with 239744612
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744612 PREDICTED: hypothetical protein XP_002343207 [Homo
sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755799 PREDICTED: hypothetical protein [Homo sapiens] 297 2e-81
gi|239750301 PREDICTED: hypothetical protein [Homo sapiens] 297 2e-81
gi|239744612 PREDICTED: hypothetical protein XP_002343207 [Homo ... 297 2e-81
gi|239755805 PREDICTED: hypothetical protein [Homo sapiens] 263 4e-71
gi|239754209 PREDICTED: hypothetical protein [Homo sapiens] 57 7e-09
gi|239748740 PREDICTED: hypothetical protein [Homo sapiens] 57 7e-09
gi|239746020 PREDICTED: hypothetical protein XP_002344182 [Homo ... 53 8e-08
gi|61966689 hypothetical protein LOC541468 [Homo sapiens] 28 2.1
gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo ... 28 2.8
gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo ... 28 2.8
gi|115583663 alpha-2-plasmin inhibitor [Homo sapiens] 27 4.7
>gi|239755799 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 297 bits (760), Expect = 2e-81
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN 60
MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN
Sbjct: 1 MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN 60
Query: 61 IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG 120
IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG
Sbjct: 61 IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG 120
Query: 121 EDGVVGLNYSSLDLYFAKAIVSPFVK 146
EDGVVGLNYSSLDLYFAKAIVSPFVK
Sbjct: 121 EDGVVGLNYSSLDLYFAKAIVSPFVK 146
>gi|239750301 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 297 bits (760), Expect = 2e-81
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN 60
MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN
Sbjct: 1 MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN 60
Query: 61 IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG 120
IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG
Sbjct: 61 IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG 120
Query: 121 EDGVVGLNYSSLDLYFAKAIVSPFVK 146
EDGVVGLNYSSLDLYFAKAIVSPFVK
Sbjct: 121 EDGVVGLNYSSLDLYFAKAIVSPFVK 146
>gi|239744612 PREDICTED: hypothetical protein XP_002343207 [Homo
sapiens]
Length = 146
Score = 297 bits (760), Expect = 2e-81
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN 60
MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN
Sbjct: 1 MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN 60
Query: 61 IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG 120
IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG
Sbjct: 61 IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG 120
Query: 121 EDGVVGLNYSSLDLYFAKAIVSPFVK 146
EDGVVGLNYSSLDLYFAKAIVSPFVK
Sbjct: 121 EDGVVGLNYSSLDLYFAKAIVSPFVK 146
>gi|239755805 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 263 bits (672), Expect = 4e-71
Identities = 128/130 (98%), Positives = 129/130 (99%)
Query: 1 MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN 60
MARVTFHHLVGWLKASIGDLCY KLF+VGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN
Sbjct: 1 MARVTFHHLVGWLKASIGDLCYSKLFVVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN 60
Query: 61 IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG 120
IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG
Sbjct: 61 IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG 120
Query: 121 EDGVVGLNYS 130
EDGVVGLNYS
Sbjct: 121 EDGVVGLNYS 130
>gi|239754209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 56.6 bits (135), Expect = 7e-09
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 7 HHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVNIQGSIK 66
HH++G ++ +G+L +R+ ++ G EV A GH V + QV +Q + +
Sbjct: 155 HHVLG-VEHLLGELGHRERPVLLAAPAGQGREAGHEEVQAREGHHVHRQLAQVCVQLARE 213
Query: 67 SQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGGEDGVVG 126
+Q D H ++ V+V VG ++ + DVI GL++ G I V V E GVVG
Sbjct: 214 AQAGGDPAHGGRHQVVEVPVGGGGQLQGAEADVIQGLVINGVGFICVFHQLVDREGGVVG 273
Query: 127 LNY 129
L++
Sbjct: 274 LHH 276
>gi|239748740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 56.6 bits (135), Expect = 7e-09
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 7 HHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVNIQGSIK 66
HH++G ++ +G+L +R+ ++ G EV A GH V + QV +Q + +
Sbjct: 155 HHVLG-VEHLLGELGHRERPVLLAAPAGQGREAGHEEVQAREGHHVHRQLAQVCVQLARE 213
Query: 67 SQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGGEDGVVG 126
+Q D H ++ V+V VG ++ + DVI GL++ G I V V E GVVG
Sbjct: 214 AQAGGDPAHGGRHQVVEVPVGGGGQLQGAEADVIQGLVINGVGFICVFHQLVDREGGVVG 273
Query: 127 LNY 129
L++
Sbjct: 274 LHH 276
>gi|239746020 PREDICTED: hypothetical protein XP_002344182 [Homo
sapiens]
Length = 162
Score = 53.1 bits (126), Expect = 8e-08
Identities = 36/129 (27%), Positives = 67/129 (51%)
Query: 1 MARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVN 60
MAR+ H V ++ +G+L + + ++ + +R EV A GH V + QV+
Sbjct: 1 MARIAGGHHVPGVEHLLGELGHGQGPVLLAAAAGERREARHEEVQAREGHHVHRQLAQVS 60
Query: 61 IQGSIKSQGSSDGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGG 120
I+ + ++Q D H ++ V+V VG ++ + DVI+ L+V G + +L V
Sbjct: 61 IELAREAQRGGDPTHGGGHQVVEVPVGGRCQLQSAEADVIERLVVDAVGLVCILHQLVHR 120
Query: 121 EDGVVGLNY 129
+ G+VGL++
Sbjct: 121 QCGIVGLHH 129
>gi|61966689 hypothetical protein LOC541468 [Homo sapiens]
Length = 239
Score = 28.5 bits (62), Expect = 2.1
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 57 CQVNIQGSIKSQGSSDGGHNLANK--AVKVSVGWALDIEVSTTDVIDGLIVYHEG 109
C++ G++ G+S GH+L +K A+K+ + + I+V ++ L+ +EG
Sbjct: 35 CELGTSGALLLPGASSTGHDLGDKIMALKMELAYLRAIDVK---ILQQLVTLNEG 86
>gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo
sapiens]
Length = 297
Score = 28.1 bits (61), Expect = 2.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 72 DGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGGEDG 123
+GG + +++V G +L +E V +G + EGT+ V +GG+ E+G
Sbjct: 171 EGGLQVEEGSLQVEEG-SLHVEEGDLHVEEGGLQVEEGTLHVEEGGLQVEEG 221
Score = 26.9 bits (58), Expect = 6.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 89 ALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGGEDGVVGLNYSSL 132
+L +E + V +G + EG ++V +GG+ E+G + + SL
Sbjct: 145 SLQVEEGSLQVEEGSLQVEEGDLQVEEGGLQVEEGSLQVEEGSL 188
>gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo
sapiens]
Length = 487
Score = 28.1 bits (61), Expect = 2.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 72 DGGHNLANKAVKVSVGWALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGGEDG 123
+GG + +++V G +L +E V +G + EGT+ V +GG+ E+G
Sbjct: 361 EGGLQVEEGSLQVEEG-SLHVEEGDLHVEEGGLQVEEGTLHVEEGGLQVEEG 411
Score = 26.9 bits (58), Expect = 6.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 89 ALDIEVSTTDVIDGLIVYHEGTIRVLQGGVGGEDGVVGLNYSSL 132
+L +E + V +G + EG ++V +GG+ E+G + + SL
Sbjct: 335 SLQVEEGSLQVEEGSLQVEEGDLQVEEGGLQVEEGSLQVEEGSL 378
>gi|115583663 alpha-2-plasmin inhibitor [Homo sapiens]
Length = 491
Score = 27.3 bits (59), Expect = 4.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 13 LKASIGDLCYRKLFMVGFLSRDDRGICGQREVDAGVGHQVGLEFCQVNIQGS 64
L A++ L ++LF + D RGI Q V +GV HQ LE +V ++ +
Sbjct: 347 LVATLSQLGLQELFQ----APDLRGISEQSLVVSGVQHQSTLELSEVGVEAA 394
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.141 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,989,277
Number of Sequences: 37866
Number of extensions: 187330
Number of successful extensions: 329
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 23
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.