Search of human proteins with 239744510

Search of human proteins with 239744510

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744510 PREDICTED: hypothetical protein XP_002343175 [Homo
sapiens]
         (86 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239744510 PREDICTED: hypothetical protein XP_002343175 [Homo ...   181   1e-46
gi|239755691 PREDICTED: hypothetical protein [Homo sapiens]           175   6e-45
gi|239750203 PREDICTED: hypothetical protein XP_002347308 [Homo ...   175   6e-45
gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Hom...    29   0.91 
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]       28   1.6  
gi|156104906 myogenic factor 5 [Homo sapiens]                          27   4.5  
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]                  27   4.5  
gi|239749645 PREDICTED: hypothetical protein [Homo sapiens]            26   7.7  
gi|4504169 glutathione synthetase [Homo sapiens]                       26   7.7  

>gi|239744510 PREDICTED: hypothetical protein XP_002343175 [Homo
          sapiens]
          Length = 86

 Score =  181 bits (458), Expect = 1e-46
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MLAMLLEPVFSHGGPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDPTSNCPAGCPQQDL 60
          MLAMLLEPVFSHGGPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDPTSNCPAGCPQQDL
Sbjct: 1  MLAMLLEPVFSHGGPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDPTSNCPAGCPQQDL 60

Query: 61 QLSYRKISSFPIRKGHVSYPLCVCSV 86
          QLSYRKISSFPIRKGHVSYPLCVCSV
Sbjct: 61 QLSYRKISSFPIRKGHVSYPLCVCSV 86


>gi|239755691 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score =  175 bits (444), Expect = 6e-45
 Identities = 84/86 (97%), Positives = 84/86 (97%)

Query: 1  MLAMLLEPVFSHGGPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDPTSNCPAGCPQQDL 60
          MLAMLLEPVFSHGGPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDP SNCPAGCPQQDL
Sbjct: 1  MLAMLLEPVFSHGGPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDPASNCPAGCPQQDL 60

Query: 61 QLSYRKISSFPIRKGHVSYPLCVCSV 86
          QLSYRKISSFPIRK HVSYPLCVCSV
Sbjct: 61 QLSYRKISSFPIRKCHVSYPLCVCSV 86


>gi|239750203 PREDICTED: hypothetical protein XP_002347308 [Homo
          sapiens]
          Length = 86

 Score =  175 bits (444), Expect = 6e-45
 Identities = 84/86 (97%), Positives = 84/86 (97%)

Query: 1  MLAMLLEPVFSHGGPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDPTSNCPAGCPQQDL 60
          MLAMLLEPVFSHGGPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDP SNCPAGCPQQDL
Sbjct: 1  MLAMLLEPVFSHGGPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDPASNCPAGCPQQDL 60

Query: 61 QLSYRKISSFPIRKGHVSYPLCVCSV 86
          QLSYRKISSFPIRK HVSYPLCVCSV
Sbjct: 61 QLSYRKISSFPIRKCHVSYPLCVCSV 86


>gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Homo
            sapiens]
          Length = 1249

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 55   CPQQDLQLSYRKISSFPIRKGHVSYPLC 82
            CPQ +  +S  KI +   RK H  +PLC
Sbjct: 1067 CPQSETIISSLKIDATLTRKNHSEHPLC 1094


>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
          Length = 860

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 20 GLEKVLKQLKISRQDYTLVLSEGFWTDPTSNCPAGCPQQDLQLSYR 65
          G EK LK+LK++ +++    SEG         P GC  +   +S+R
Sbjct: 37 GGEKALKRLKLAVEEFVHATSEG-------EAPGGCEGRGAPVSFR 75


>gi|156104906 myogenic factor 5 [Homo sapiens]
          Length = 255

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 45  TDPTSNCPAGCPQQDLQLSYRKISSF 70
           T PTSNC  G P+ +  +  RK S+F
Sbjct: 157 TSPTSNCSDGMPECNSPVWSRKSSTF 182


>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
          Length = 689

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 14  GPSRRVGLEKVLKQLKISRQDYTLVLSEGFWTDP-TSNCPAGCPQQDLQLSYRKISSFP 71
           GPSR VGL+   + +  +RQ+    LSE     P T     G   ++   + RK S FP
Sbjct: 466 GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFP 524


>gi|239749645 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 122

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 47  PTSNCPAGCPQQDLQLSYRKISSFPIR----KGHVSYPLCVCS 85
           P   C  GC ++    + RK+ +F +      G V+   CVCS
Sbjct: 72  PAPPCTGGCEERRSGFAARKVHTFLVLIFHFTGSVNQSKCVCS 114


>gi|4504169 glutathione synthetase [Homo sapiens]
          Length = 474

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 13  GGPSRRVGLEKV--LKQLKISRQDYTLVLSEGFWTDPTSNC 51
           GG +   G E V  LKQLK S +  + +L E    +P  NC
Sbjct: 369 GGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENC 409


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,549,498
Number of Sequences: 37866
Number of extensions: 132893
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.