Search of human proteins with 239743918

Search of human proteins with 239743918

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743918 PREDICTED: hypothetical protein XP_002342973 [Homo
sapiens]
         (122 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743918 PREDICTED: hypothetical protein XP_002342973 [Homo ...   259   5e-70
gi|239749645 PREDICTED: hypothetical protein [Homo sapiens]           258   1e-69
gi|63054868 YdjC homolog [Homo sapiens]                                30   0.34 
gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]            29   0.76 
gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo ...    29   0.76 
gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo ...    29   0.76 
gi|19923977 hypothetical protein LOC115416 [Homo sapiens]              27   2.9  
gi|169174843 PREDICTED: similar to hCG1742442 [Homo sapiens]           27   3.8  
gi|239755691 PREDICTED: hypothetical protein [Homo sapiens]            27   4.9  
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ...    27   4.9  
gi|239750203 PREDICTED: hypothetical protein XP_002347308 [Homo ...    27   4.9  
gi|4503213 cytochrome P450, family 27, subfamily B, polypeptide ...    26   6.5  
gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ...    26   6.5  
gi|118601070 hypothetical protein LOC158724 [Homo sapiens]             26   6.5  

>gi|239743918 PREDICTED: hypothetical protein XP_002342973 [Homo
           sapiens]
          Length = 122

 Score =  259 bits (661), Expect = 5e-70
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MGSFINQTSTSSAGQLAGLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAH 60
           MGSFINQTSTSSAGQLAGLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAH
Sbjct: 1   MGSFINQTSTSSAGQLAGLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAH 60

Query: 61  FLNFPEGAKFLPAPPCTGGCEERRSGFAARKVHTFLVLIFHFTGSVNESKCVCSPSSPYP 120
           FLNFPEGAKFLPAPPCTGGCEERRSGFAARKVHTFLVLIFHFTGSVNESKCVCSPSSPYP
Sbjct: 61  FLNFPEGAKFLPAPPCTGGCEERRSGFAARKVHTFLVLIFHFTGSVNESKCVCSPSSPYP 120

Query: 121 RL 122
           RL
Sbjct: 121 RL 122


>gi|239749645 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 122

 Score =  258 bits (658), Expect = 1e-69
 Identities = 121/122 (99%), Positives = 122/122 (100%)

Query: 1   MGSFINQTSTSSAGQLAGLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAH 60
           MGSFINQTSTSSAGQLAGLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAH
Sbjct: 1   MGSFINQTSTSSAGQLAGLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAH 60

Query: 61  FLNFPEGAKFLPAPPCTGGCEERRSGFAARKVHTFLVLIFHFTGSVNESKCVCSPSSPYP 120
           FLNFPEGAKFLPAPPCTGGCEERRSGFAARKVHTFLVLIFHFTGSVN+SKCVCSPSSPYP
Sbjct: 61  FLNFPEGAKFLPAPPCTGGCEERRSGFAARKVHTFLVLIFHFTGSVNQSKCVCSPSSPYP 120

Query: 121 RL 122
           RL
Sbjct: 121 RL 122


>gi|63054868 YdjC homolog [Homo sapiens]
          Length = 323

 Score = 30.4 bits (67), Expect = 0.34
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 18  GLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAHFLNFPEGAKFLPAPPCT 77
           GLRWT      S C   +   +    +A   +    G +  A  +  P      P+ P T
Sbjct: 199 GLRWTDAFVGLSTCGRHMSAHRVSGALARVLEGTLAGHTLTAELMAHPG----YPSVPPT 254

Query: 78  GGCEERRSGFAA--RKVHTFLVL 98
           GGC E    F+    ++H   VL
Sbjct: 255 GGCGEGPDAFSCSWERLHELRVL 277


>gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 545

 Score = 29.3 bits (64), Expect = 0.76
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 44  IAGPAKPRKCGLSFVAHFLNFPEGAKFLPAPPCTG 78
           +AGPA PR CG++  A        A F   PPC G
Sbjct: 431 LAGPAAPRACGVAEAA------GPASFAVLPPCPG 459


>gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo
           sapiens]
          Length = 291

 Score = 29.3 bits (64), Expect = 0.76
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 44  IAGPAKPRKCGLSFVAHFLNFPEGAKFLPAPPCTG 78
           +AGPA PR CG++  A        A F   PPC G
Sbjct: 177 LAGPAAPRACGVAEAA------GPASFAVLPPCPG 205


>gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo
           sapiens]
          Length = 291

 Score = 29.3 bits (64), Expect = 0.76
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 44  IAGPAKPRKCGLSFVAHFLNFPEGAKFLPAPPCTG 78
           +AGPA PR CG++  A        A F   PPC G
Sbjct: 177 LAGPAAPRACGVAEAA------GPASFAVLPPCPG 205


>gi|19923977 hypothetical protein LOC115416 [Homo sapiens]
          Length = 234

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 26  GAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAHFLNFPEGAKFLPAPPCTGGCEERRS 85
           G  +R  +PL  R+A+ ++AG A   + GL  +A     P GA F         C   ++
Sbjct: 5   GRVARLLAPLMWRRAVSSVAGSAVGAEPGLRLLA-VQRLPVGAAF---------CRACQT 54

Query: 86  GFAARKVHTFLVLIFHFTGSVNESK 110
               R +H+   L     G+VNE +
Sbjct: 55  PNFVRGLHSEPGLEERAEGTVNEGR 79


>gi|169174843 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 276

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 47 PAKPRKCGLSFVAHFLNFPEGAKFLPAPPCTGGCEERRSGFAA 89
          PAKP   GL    H+   P    FLP P  +G C  R    AA
Sbjct: 22 PAKPSCAGLLPHLHYFA-PRRRGFLPPPAASGFCPPRLFASAA 63


>gi|239755691 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score = 26.6 bits (57), Expect = 4.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 72  PAPPCTGGCEERRSGFAARKVHTFLVLIFHFTGSVNESKCVCS 114
           PA  C  GC ++    + RK+ +F +   H    V+   CVCS
Sbjct: 47  PASNCPAGCPQQDLQLSYRKISSFPIRKCH----VSYPLCVCS 85


>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
           sapiens]
          Length = 935

 Score = 26.6 bits (57), Expect = 4.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 28  FSRCRSPLPTRKALENIAGPAKPRKCGLS 56
           F RC +P P R+   +I GP +    G S
Sbjct: 888 FQRCPAPRPRRRLGVSIVGPGRAHSAGRS 916


>gi|239750203 PREDICTED: hypothetical protein XP_002347308 [Homo
           sapiens]
          Length = 86

 Score = 26.6 bits (57), Expect = 4.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 72  PAPPCTGGCEERRSGFAARKVHTFLVLIFHFTGSVNESKCVCS 114
           PA  C  GC ++    + RK+ +F +   H    V+   CVCS
Sbjct: 47  PASNCPAGCPQQDLQLSYRKISSFPIRKCH----VSYPLCVCS 85


>gi|4503213 cytochrome P450, family 27, subfamily B, polypeptide 1
          [Homo sapiens]
          Length = 508

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 19 LRWTPRHGAFSRCRSPLPTRKALENIAGPAKP 50
          +RW P  GA    R     R++L +I GP+ P
Sbjct: 15 VRWAPELGASLGYREYHSARRSLADIPGPSTP 46


>gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
           sapiens]
          Length = 659

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 14  GQLAGLRWTPRHGAF---------SRCRSPLPTRKALENIAGPAKPRKCGLSF 57
           GQ    RW  R G           +  R+P    +A   I+G   PR+CG +F
Sbjct: 573 GQSLAWRWAARSGVVGGGWRSQPHATGRTPRRLFRASPGISGGCWPRRCGAAF 625


>gi|118601070 hypothetical protein LOC158724 [Homo sapiens]
          Length = 791

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 17  AGLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAHFLNFPEGAKFLPAPPC 76
           + LR  P     SR R   P  +   ++   A+P K G+S ++      E +   P PP 
Sbjct: 348 SSLRSEPSETGVSRLRLAPPKTRRGSSLH--AEPSKTGVSHLSPEPPKTEVSHLHPVPPK 405

Query: 77  TGGCEERRSGFAARKVHTFLVLI 99
           TG C  R       +V   L+ I
Sbjct: 406 TGVCHLRLEPPDTSQVSNLLLYI 428


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,800,768
Number of Sequences: 37866
Number of extensions: 274223
Number of successful extensions: 577
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 14
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.