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Search of human proteins with 239743874
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743874 PREDICTED: similar to zinc finger protein 598
[Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743874 PREDICTED: similar to zinc finger protein 598 [Homo... 380 e-106
gi|30039694 zinc finger protein 598 [Homo sapiens] 296 7e-81
gi|239755087 PREDICTED: similar to zinc finger protein 598 [Homo... 274 4e-74
gi|239749606 PREDICTED: similar to zinc finger protein 598 [Homo... 274 4e-74
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 34 0.083
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 34 0.083
gi|38045948 ubiquitin-like modifier activating enzyme 7 [Homo sa... 30 0.92
gi|223029388 CD209 molecule isoform 4 [Homo sapiens] 28 3.5
gi|223029386 CD209 molecule isoform 3 [Homo sapiens] 28 3.5
gi|223029382 CD209 molecule isoform 6 [Homo sapiens] 28 3.5
gi|10863957 CD209 molecule isoform 1 [Homo sapiens] 28 3.5
gi|13699824 kinesin family member 11 [Homo sapiens] 28 4.6
gi|24308227 zinc finger protein 687 [Homo sapiens] 28 5.9
>gi|239743874 PREDICTED: similar to zinc finger protein 598 [Homo
sapiens]
Length = 186
Score = 380 bits (977), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MLFFPRHRRTSQRSAAPAHPGCRAPRLQRCVPENFWERKLQLIQSIRDFLQSDEARFSEF 60
MLFFPRHRRTSQRSAAPAHPGCRAPRLQRCVPENFWERKLQLIQSIRDFLQSDEARFSEF
Sbjct: 1 MLFFPRHRRTSQRSAAPAHPGCRAPRLQRCVPENFWERKLQLIQSIRDFLQSDEARFSEF 60
Query: 61 KSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNRE 120
KSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNRE
Sbjct: 61 KSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNRE 120
Query: 121 KTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAARDDDFPSLQA 180
KTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAARDDDFPSLQA
Sbjct: 121 KTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAARDDDFPSLQA 180
Query: 181 ISRIIT 186
ISRIIT
Sbjct: 181 ISRIIT 186
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 296 bits (758), Expect = 7e-81
Identities = 154/183 (84%), Positives = 157/183 (85%), Gaps = 15/183 (8%)
Query: 19 HPGC----------RAPRLQRC-----VPENFWERKLQLIQSIRDFLQSDEARFSEFKSH 63
HP C +APRL VPENF ER LQLIQSIRDFLQSDEARFSEFKSH
Sbjct: 722 HPACVPSPATTTTTKAPRLLPAPRAYLVPENFRERNLQLIQSIRDFLQSDEARFSEFKSH 781
Query: 64 SGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTL 123
SGEFRQGLISAAQYYKSCR LLGENFQKVFNELLVLLPDTAKQQE+LSAHTDF NREK L
Sbjct: 782 SGEFRQGLISAAQYYKSCRDLLGENFQKVFNELLVLLPDTAKQQELLSAHTDFCNREKPL 841
Query: 124 STKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISR 183
STKSK NKKSAWQATTQQAGLDCRVCPTCQQVL HGDASSHQALHAARDDDFPSLQAI+R
Sbjct: 842 STKSKKNKKSAWQATTQQAGLDCRVCPTCQQVLAHGDASSHQALHAARDDDFPSLQAIAR 901
Query: 184 IIT 186
IIT
Sbjct: 902 IIT 904
>gi|239755087 PREDICTED: similar to zinc finger protein 598 [Homo
sapiens]
Length = 159
Score = 274 bits (700), Expect = 4e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 52 SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS 111
SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS
Sbjct: 25 SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS 84
Query: 112 AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR 171
AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR
Sbjct: 85 AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR 144
Query: 172 DDDFPSLQAISRIIT 186
DDDFPSLQAISRIIT
Sbjct: 145 DDDFPSLQAISRIIT 159
>gi|239749606 PREDICTED: similar to zinc finger protein 598 [Homo
sapiens]
Length = 159
Score = 274 bits (700), Expect = 4e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 52 SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS 111
SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS
Sbjct: 25 SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS 84
Query: 112 AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR 171
AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR
Sbjct: 85 AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR 144
Query: 172 DDDFPSLQAISRIIT 186
DDDFPSLQAISRIIT
Sbjct: 145 DDDFPSLQAISRIIT 159
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 33.9 bits (76), Expect = 0.083
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 79 KSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKS 133
+ CR L + +K+ NE+L P A +++I + N EK L KSKN +K+
Sbjct: 3662 EECRKALEDIDEKISNEVLKSSPSYAMRRKIEEINNGLHNVEKMLQQKSKNIEKA 3716
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 33.9 bits (76), Expect = 0.083
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 79 KSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKS 133
+ CR L + +K+ NE+L P A +++I + N EK L KSKN +K+
Sbjct: 3662 EECRKALEDIDEKISNEVLKSSPSYAMRRKIEEINNGLHNVEKMLQQKSKNIEKA 3716
>gi|38045948 ubiquitin-like modifier activating enzyme 7 [Homo
sapiens]
Length = 1012
Score = 30.4 bits (67), Expect = 0.92
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 59 EFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQ---------EI 109
EF ++ +++AA Y GL G ELL LLP QQ E+
Sbjct: 716 EFDTNQDTHLLYVLAAANLYAQMHGLPGSQDWTALRELLKLLPQPDPQQMAPIFASNLEL 775
Query: 110 LSAHTDFGNREKTLSTKSKNNKKSAW 135
SA +FG ++ K N W
Sbjct: 776 ASASAEFGPEQQ----KELNKALEVW 797
>gi|223029388 CD209 molecule isoform 4 [Homo sapiens]
Length = 398
Score = 28.5 bits (62), Expect = 3.5
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 26 RLQRCVPENFWERKLQLIQSIRDFLQSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLL 85
RL+ V E + KLQ I +L++ E KS E Q L K+ G L
Sbjct: 129 RLKAAVGELPEKSKLQEIYQELTWLKAAVGELPE-KSKMQEIYQELTRL----KAAVGEL 183
Query: 86 GENF--QKVFNELLVL------LPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQA 137
E Q+++ EL L LP+ +KQQEI T L KSK ++ +Q
Sbjct: 184 PEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSK--QQEIYQE 241
Query: 138 TTQQAGLDCRVCPTC 152
TQ R+C C
Sbjct: 242 LTQLKAAVERLCHPC 256
>gi|223029386 CD209 molecule isoform 3 [Homo sapiens]
Length = 380
Score = 28.5 bits (62), Expect = 3.5
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 26 RLQRCVPENFWERKLQLIQSIRDFLQSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLL 85
RL+ V E + KLQ I +L++ E KS E Q L K+ G L
Sbjct: 105 RLKAAVGELPEKSKLQEIYQELTWLKAAVGELPE-KSKMQEIYQELTRL----KAAVGEL 159
Query: 86 GENF--QKVFNELLVL------LPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQA 137
E Q+++ EL L LP+ +KQQEI T L KSK ++ +Q
Sbjct: 160 PEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSK--QQEIYQE 217
Query: 138 TTQQAGLDCRVCPTC 152
TQ R+C C
Sbjct: 218 LTQLKAAVERLCHPC 232
>gi|223029382 CD209 molecule isoform 6 [Homo sapiens]
Length = 360
Score = 28.5 bits (62), Expect = 3.5
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 26 RLQRCVPENFWERKLQLIQSIRDFLQSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLL 85
RL+ V E + KLQ I +L++ E KS E Q L K+ G L
Sbjct: 85 RLKAAVGELPEKSKLQEIYQELTWLKAAVGELPE-KSKMQEIYQELTRL----KAAVGEL 139
Query: 86 GENF--QKVFNELLVL------LPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQA 137
E Q+++ EL L LP+ +KQQEI T L KSK ++ +Q
Sbjct: 140 PEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSK--QQEIYQE 197
Query: 138 TTQQAGLDCRVCPTC 152
TQ R+C C
Sbjct: 198 LTQLKAAVERLCHPC 212
>gi|10863957 CD209 molecule isoform 1 [Homo sapiens]
Length = 404
Score = 28.5 bits (62), Expect = 3.5
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 26 RLQRCVPENFWERKLQLIQSIRDFLQSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLL 85
RL+ V E + KLQ I +L++ E KS E Q L K+ G L
Sbjct: 129 RLKAAVGELPEKSKLQEIYQELTWLKAAVGELPE-KSKMQEIYQELTRL----KAAVGEL 183
Query: 86 GENF--QKVFNELLVL------LPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQA 137
E Q+++ EL L LP+ +KQQEI T L KSK ++ +Q
Sbjct: 184 PEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSK--QQEIYQE 241
Query: 138 TTQQAGLDCRVCPTC 152
TQ R+C C
Sbjct: 242 LTQLKAAVERLCHPC 256
>gi|13699824 kinesin family member 11 [Homo sapiens]
Length = 1056
Score = 28.1 bits (61), Expect = 4.6
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 37 ERKLQLIQS--IRDFLQSDEARFSEFKS----------------HSGEFRQGLISAAQYY 78
E KLQL++ I L+S E + + S HS R+ + Q+
Sbjct: 470 ETKLQLVKEEYITSALESTEEKLHDAASKLLNTVEETTKDVSGLHSKLDRKKAVD--QHN 527
Query: 79 KSCRGLLGENFQKVFNELLVLLPD-TAKQQEILSAH-TDFGN 118
+ + G+N +FN + L+ D ++KQ+ +L H T FGN
Sbjct: 528 AEAQDIFGKNLNSLFNNMEELIKDGSSKQKAMLEVHKTLFGN 569
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 27.7 bits (60), Expect = 5.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 111 SAHTDFGNREKTLSTKSKNNKKSAWQATTQQAG-----LDCRVCPTCQQVLTHG-DASSH 164
SA+T F + L K + K+ A QQ G VCPTC +L + S+H
Sbjct: 668 SAYTCF----RCLECKEQCRDKAGMAAHFQQLGPPAPGATSNVCPTCPMMLPNRCSFSAH 723
Query: 165 QALHAAR 171
Q +H R
Sbjct: 724 QRMHKNR 730
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,202,010
Number of Sequences: 37866
Number of extensions: 286724
Number of successful extensions: 1040
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 20
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.