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Search of human proteins with 239743604
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743604 PREDICTED: hypothetical protein XP_002342914 [Homo
sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749466 PREDICTED: hypothetical protein XP_002347060 [Homo ... 371 e-103
gi|239743604 PREDICTED: hypothetical protein XP_002342914 [Homo ... 371 e-103
gi|239754923 PREDICTED: similar to slowmo homolog 1 [Homo sapiens] 275 2e-74
gi|215490114 slowmo homolog 1 isoform 1 [Homo sapiens] 136 1e-32
gi|38678528 slowmo homolog 1 isoform 1 [Homo sapiens] 136 1e-32
gi|117553615 slowmo homolog 2 [Homo sapiens] 104 4e-23
gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo sap... 30 0.90
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 27 9.9
gi|153792144 ATP-binding cassette, sub-family A, member 10 [Homo... 27 9.9
gi|35493952 ubiquitin protein ligase E3B [Homo sapiens] 27 9.9
gi|35493959 ubiquitin protein ligase E3B [Homo sapiens] 27 9.9
>gi|239749466 PREDICTED: hypothetical protein XP_002347060 [Homo
sapiens]
Length = 184
Score = 371 bits (953), Expect = e-103
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MLATGKYEMRKKMGGKHKLLCQQPHSLRLSERRAWQWAQPLVQHAQRSEYVFDYPCDIAI 60
MLATGKYEMRKKMGGKHKLLCQQPHSLRLSERRAWQWAQPLVQHAQRSEYVFDYPCDIAI
Sbjct: 1 MLATGKYEMRKKMGGKHKLLCQQPHSLRLSERRAWQWAQPLVQHAQRSEYVFDYPCDIAI 60
Query: 61 EAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILTYIKEHFVIDLVKKK 120
EAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILTYIKEHFVIDLVKKK
Sbjct: 61 EAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILTYIKEHFVIDLVKKK 120
Query: 121 MELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGITLGNHLESLTANII 180
MELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGITLGNHLESLTANII
Sbjct: 121 MELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGITLGNHLESLTANII 180
Query: 181 SSNP 184
SSNP
Sbjct: 181 SSNP 184
>gi|239743604 PREDICTED: hypothetical protein XP_002342914 [Homo
sapiens]
Length = 184
Score = 371 bits (953), Expect = e-103
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MLATGKYEMRKKMGGKHKLLCQQPHSLRLSERRAWQWAQPLVQHAQRSEYVFDYPCDIAI 60
MLATGKYEMRKKMGGKHKLLCQQPHSLRLSERRAWQWAQPLVQHAQRSEYVFDYPCDIAI
Sbjct: 1 MLATGKYEMRKKMGGKHKLLCQQPHSLRLSERRAWQWAQPLVQHAQRSEYVFDYPCDIAI 60
Query: 61 EAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILTYIKEHFVIDLVKKK 120
EAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILTYIKEHFVIDLVKKK
Sbjct: 61 EAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILTYIKEHFVIDLVKKK 120
Query: 121 MELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGITLGNHLESLTANII 180
MELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGITLGNHLESLTANII
Sbjct: 121 MELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGITLGNHLESLTANII 180
Query: 181 SSNP 184
SSNP
Sbjct: 181 SSNP 184
>gi|239754923 PREDICTED: similar to slowmo homolog 1 [Homo sapiens]
Length = 218
Score = 275 bits (702), Expect = 2e-74
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 47 RSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT 106
RSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT
Sbjct: 81 RSEYVFDYPCDIAIEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT 140
Query: 107 YIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGI 166
YIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGI
Sbjct: 141 YIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGI 200
Query: 167 TLGNHLESLTANIISSNP 184
TLGNHLESLTANIISSNP
Sbjct: 201 TLGNHLESLTANIISSNP 218
>gi|215490114 slowmo homolog 1 isoform 1 [Homo sapiens]
Length = 172
Score = 136 bits (342), Expect = 1e-32
Identities = 82/152 (53%), Positives = 100/152 (65%), Gaps = 21/152 (13%)
Query: 48 SEYVFDYPCDIAIEAAMRKYLNLMTIV----------------LHRQHFLSIKWGLLTLV 91
SE+VF +P D I+AAMRKY N M LH LS +WGL +LV
Sbjct: 6 SEHVFGHPWDTVIQAAMRKYPNPMNPSVLGVDVLQRRVDGRGRLHSLRLLSTEWGLPSLV 65
Query: 92 KVMRPQILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLE 151
+ IL TSR LTYI+EH V+D V+KKMELC TN I ++N VSVN +L+YTPH EN E
Sbjct: 66 RA----ILGTSRTLTYIREHSVVDPVEKKMELCSTN-ITLTNLVSVNERLVYTPHPENPE 120
Query: 152 ITMLTQGAIITTSGITLGNHLESLTANIISSN 183
+T+LTQ AIIT GI+LG++LESL AN ISSN
Sbjct: 121 MTVLTQEAIITVKGISLGSYLESLMANTISSN 152
>gi|38678528 slowmo homolog 1 isoform 1 [Homo sapiens]
Length = 172
Score = 136 bits (342), Expect = 1e-32
Identities = 82/152 (53%), Positives = 100/152 (65%), Gaps = 21/152 (13%)
Query: 48 SEYVFDYPCDIAIEAAMRKYLNLMTIV----------------LHRQHFLSIKWGLLTLV 91
SE+VF +P D I+AAMRKY N M LH LS +WGL +LV
Sbjct: 6 SEHVFGHPWDTVIQAAMRKYPNPMNPSVLGVDVLQRRVDGRGRLHSLRLLSTEWGLPSLV 65
Query: 92 KVMRPQILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLE 151
+ IL TSR LTYI+EH V+D V+KKMELC TN I ++N VSVN +L+YTPH EN E
Sbjct: 66 RA----ILGTSRTLTYIREHSVVDPVEKKMELCSTN-ITLTNLVSVNERLVYTPHPENPE 120
Query: 152 ITMLTQGAIITTSGITLGNHLESLTANIISSN 183
+T+LTQ AIIT GI+LG++LESL AN ISSN
Sbjct: 121 MTVLTQEAIITVKGISLGSYLESLMANTISSN 152
>gi|117553615 slowmo homolog 2 [Homo sapiens]
Length = 194
Score = 104 bits (260), Expect = 4e-23
Identities = 65/152 (42%), Positives = 93/152 (61%), Gaps = 21/152 (13%)
Query: 48 SEYVFDYPCDIAIEAAMRKYLNLM--TIV--------------LHRQHFLSIKWGLLTLV 91
SE+VFD+P + AAM+KY N M ++V LH LS +WGL ++V
Sbjct: 6 SEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIV 65
Query: 92 KVMRPQILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVSVNGKLLYTPHLENLE 151
K ++ +R TY++EH V+D V+K MEL TN I +N VSV+ +L+Y PH ++ E
Sbjct: 66 K----SLIGAARTKTYVQEHSVVDPVEKTMELKSTN-ISFTNMVSVDERLIYKPHPQDPE 120
Query: 152 ITMLTQGAIITTSGITLGNHLESLTANIISSN 183
T+LTQ AIIT G++L ++LE L A+ ISSN
Sbjct: 121 KTVLTQEAIITVKGVSLSSYLEGLMASTISSN 152
>gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo
sapiens]
Length = 1064
Score = 30.4 bits (67), Expect = 0.90
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 123 LCCTNNIIVSNSVSVNGKLLYTPHLENLEITMLTQGAIITTSGITLGNHLESLTANIISS 182
L CTN+I S TP + + T SG T N L SLT++I+SS
Sbjct: 476 LTCTNDI--STESLTTAMTSTTPVISAITPKTTVTSMTTTASGPTTTNTLSSLTSSILSS 533
Query: 183 NP 184
P
Sbjct: 534 TP 535
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 26.9 bits (58), Expect = 9.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 78 QHFLSIKWGLLTLVKVMRP-QILETSRILTYIKEHFVIDLVKKKMELCCTNNIIVSNSVS 136
QH S L ++K P +++ +R L E FV+D+VK ++ N IV SV
Sbjct: 647 QHLESAATELNKILKAKYPTEMIIATRFLCSAVEDFVVDIVKAWGQIKQNNTAIV--SVI 704
Query: 137 VNGKLLY 143
+ L+Y
Sbjct: 705 LKSDLMY 711
>gi|153792144 ATP-binding cassette, sub-family A, member 10 [Homo
sapiens]
Length = 1543
Score = 26.9 bits (58), Expect = 9.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 80 FLSIKWGLLTLVKVMRPQILETSRILTYIKEH 111
FL KWG+ + + R ++ +T +I + IK+H
Sbjct: 612 FLKRKWGIGYHLSLHRNEMCDTEKITSLIKQH 643
>gi|35493952 ubiquitin protein ligase E3B [Homo sapiens]
Length = 1068
Score = 26.9 bits (58), Expect = 9.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 60 IEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT 106
+ A K L L+ I Q +I W +K ++P+IL+ SR++T
Sbjct: 118 VSLACSKDLTLLWI----QQIKNILWYCCDFLKQLKPEILQDSRLIT 160
>gi|35493959 ubiquitin protein ligase E3B [Homo sapiens]
Length = 1068
Score = 26.9 bits (58), Expect = 9.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 60 IEAAMRKYLNLMTIVLHRQHFLSIKWGLLTLVKVMRPQILETSRILT 106
+ A K L L+ I Q +I W +K ++P+IL+ SR++T
Sbjct: 118 VSLACSKDLTLLWI----QQIKNILWYCCDFLKQLKPEILQDSRLIT 160
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,202,016
Number of Sequences: 37866
Number of extensions: 233657
Number of successful extensions: 526
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 14
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.