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Search of human proteins with 239743453
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo
sapiens]
(64 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo ... 143 3e-35
gi|4826692 defensin, beta 4 precursor [Homo sapiens] 143 3e-35
gi|8923890 defensin, beta 103A precursor [Homo sapiens] 54 2e-08
gi|125656159 beta-defensin 103B precursor [Homo sapiens] 54 2e-08
gi|4885181 defensin, beta 1 preproprotein [Homo sapiens] 33 0.049
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 32 0.14
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 31 0.19
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 31 0.19
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 31 0.19
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 30 0.32
gi|223972632 tRNA-intron nuclease 2 isoform 1 [Homo sapiens] 30 0.54
gi|13376882 tRNA-intron nuclease 2 isoform 1 [Homo sapiens] 30 0.54
gi|223972638 tRNA-intron nuclease 2 isoform 4 [Homo sapiens] 30 0.54
gi|223972634 tRNA-intron nuclease 2 isoform 2 [Homo sapiens] 30 0.54
gi|126091070 sperm associated antigen 11B isoform E precursor [H... 29 0.92
gi|71565154 class III alcohol dehydrogenase, chi subunit [Homo s... 27 3.5
gi|54112385 four and a half LIM domains 3 [Homo sapiens] 27 3.5
gi|153792351 ADAM metallopeptidase with thrombospondin type 1 mo... 27 3.5
>gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo
sapiens]
Length = 64
Score = 143 bits (361), Expect = 3e-35
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC 60
MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC
Sbjct: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC 60
Query: 61 CKKP 64
CKKP
Sbjct: 61 CKKP 64
>gi|4826692 defensin, beta 4 precursor [Homo sapiens]
Length = 64
Score = 143 bits (361), Expect = 3e-35
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC 60
MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC
Sbjct: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKC 60
Query: 61 CKKP 64
CKKP
Sbjct: 61 CKKP 64
>gi|8923890 defensin, beta 103A precursor [Homo sapiens]
Length = 67
Score = 54.3 bits (129), Expect = 2e-08
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVT---CLKSGAICHPVFCPRRYKQIGTCGLPG 57
MR+ YLLF+ LF+FL+P+PG GGI + + C G C + C + +QIG C G
Sbjct: 1 MRIHYLLFALLFLFLVPVPG-HGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG 59
Query: 58 TKCCKK 63
KCC++
Sbjct: 60 RKCCRR 65
>gi|125656159 beta-defensin 103B precursor [Homo sapiens]
Length = 67
Score = 54.3 bits (129), Expect = 2e-08
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPVT---CLKSGAICHPVFCPRRYKQIGTCGLPG 57
MR+ YLLF+ LF+FL+P+PG GGI + + C G C + C + +QIG C G
Sbjct: 1 MRIHYLLFALLFLFLVPVPG-HGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRG 59
Query: 58 TKCCKK 63
KCC++
Sbjct: 60 RKCCRR 65
>gi|4885181 defensin, beta 1 preproprotein [Homo sapiens]
Length = 68
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 1 MRVLYLLFSFLFIFLMPLPG---VFGGIG---DPVTCLKSGAICHPVFCPRRYKQIGTCG 54
MR YLL L + L + G+G D C+ SG C CP K GTC
Sbjct: 1 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY 60
Query: 55 LPGTKCCK 62
KCCK
Sbjct: 61 RGKAKCCK 68
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1 MRVLYLLFSFLFIFLMPLPGVFGGIGDPV-TCLKSGAICHPVFCPRRYKQIGTCGLPGTK 59
MR+ LL LF L+ PG GG+G CL +C C QIG C K
Sbjct: 1 MRLHLLLLILLFSILLS-PGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRK-MK 58
Query: 60 CCK 62
CC+
Sbjct: 59 CCR 61
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 11 LFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCKK 63
LF+ L+P + G I C+ +C C IG C G KCC++
Sbjct: 60 LFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICN-EGKKCCRR 111
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 11 LFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCKK 63
LF+ L+P + G I C+ +C C IG C G KCC++
Sbjct: 60 LFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICN-EGKKCCRR 111
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 11 LFIFLMPLPGVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCKK 63
LF+ L+P + G I C+ +C C IG C G KCC++
Sbjct: 60 LFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICN-EGKKCCRR 111
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 4 LYLLFSFLFIFLMPLPGVFGGIGDP-VTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCK 62
L++L L +F + L V G +G V CL +C C QIG C KCC+
Sbjct: 66 LHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGAC-RRRMKCCR 124
>gi|223972632 tRNA-intron nuclease 2 isoform 1 [Homo sapiens]
Length = 465
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 20 GVFGGIGDP---VTCLKSGAICHPVF-CPRRYKQIGTCGLPGTKCCKK 63
G GG+GDP + CL+ G+ CHP + + LP CCK+
Sbjct: 178 GKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQ 225
>gi|13376882 tRNA-intron nuclease 2 isoform 1 [Homo sapiens]
Length = 465
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 20 GVFGGIGDP---VTCLKSGAICHPVF-CPRRYKQIGTCGLPGTKCCKK 63
G GG+GDP + CL+ G+ CHP + + LP CCK+
Sbjct: 178 GKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQ 225
>gi|223972638 tRNA-intron nuclease 2 isoform 4 [Homo sapiens]
Length = 402
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 20 GVFGGIGDP---VTCLKSGAICHPVF-CPRRYKQIGTCGLPGTKCCKK 63
G GG+GDP + CL+ G+ CHP + + LP CCK+
Sbjct: 178 GKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQ 225
>gi|223972634 tRNA-intron nuclease 2 isoform 2 [Homo sapiens]
Length = 439
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 20 GVFGGIGDP---VTCLKSGAICHPVF-CPRRYKQIGTCGLPGTKCCKK 63
G GG+GDP + CL+ G+ CHP + + LP CCK+
Sbjct: 178 GKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQ 225
>gi|126091070 sperm associated antigen 11B isoform E precursor
[Homo sapiens]
Length = 80
Score = 28.9 bits (63), Expect = 0.92
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 4 LYLLFSFLFIFLMPLPG-VFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCC 61
++ LF+ LF + G V GI + + ++ G IC FC K+ C P +CC
Sbjct: 3 VFFLFAVLFCLVQTNSGDVPPGIRNTICHMQQG-ICRLFFCHSGEKKRDICSDPWNRCC 60
>gi|71565154 class III alcohol dehydrogenase, chi subunit [Homo
sapiens]
Length = 374
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 20 GVFGGIGDPVTCLKSGAICHPVFCPRRYKQIGTCGL---PGTKCCKK 63
G+ +G+ VT LK+G P++ P Q G C P T C+K
Sbjct: 71 GIVESVGEGVTKLKAGDTVIPLYIP----QCGECKFCLNPKTNLCQK 113
>gi|54112385 four and a half LIM domains 3 [Homo sapiens]
Length = 280
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 27 DPVTCLKSGAICHPVFCPRRYKQIGTCG---LPGTK 59
+P TC S +C+ +C Q CG +PG++
Sbjct: 78 EPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSR 113
>gi|153792351 ADAM metallopeptidase with thrombospondin type 1
motif, 8 preproprotein [Homo sapiens]
Length = 889
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 31 CLKSGAICHPVFCPRRYKQIGTCGLPGTKCCK 62
C+K+G H V PR+ + G CG G C K
Sbjct: 661 CVKAGCD-HVVDSPRKLDKCGVCGGKGNSCRK 691
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.335 0.155 0.551
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,002,163
Number of Sequences: 37866
Number of extensions: 118061
Number of successful extensions: 524
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 18
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.