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Search of human proteins with 239743330
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743330 PREDICTED: hypothetical protein XP_002342792 [Homo
sapiens]
(88 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754690 PREDICTED: hypothetical protein [Homo sapiens] 179 5e-46
gi|239749238 PREDICTED: hypothetical protein [Homo sapiens] 179 5e-46
gi|239743330 PREDICTED: hypothetical protein XP_002342792 [Homo ... 179 5e-46
gi|239509013 PREDICTED: hypothetical protein [Homo sapiens] 179 5e-46
gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo sapi... 32 0.082
gi|20336302 DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Homo sapi... 28 1.2
gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo sap... 26 7.7
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 26 7.7
gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo sap... 26 7.7
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 26 7.7
gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo sap... 26 7.7
gi|224282125 tRNA-yW synthesizing protein 1 homolog B isoform 2 ... 26 7.7
>gi|239754690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 179 bits (453), Expect = 5e-46
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS 60
MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS
Sbjct: 1 MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS 60
Query: 61 LQRAEGGRPGRGGRQRRWEEKCKKKNKR 88
LQRAEGGRPGRGGRQRRWEEKCKKKNKR
Sbjct: 61 LQRAEGGRPGRGGRQRRWEEKCKKKNKR 88
>gi|239749238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 179 bits (453), Expect = 5e-46
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS 60
MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS
Sbjct: 1 MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS 60
Query: 61 LQRAEGGRPGRGGRQRRWEEKCKKKNKR 88
LQRAEGGRPGRGGRQRRWEEKCKKKNKR
Sbjct: 61 LQRAEGGRPGRGGRQRRWEEKCKKKNKR 88
>gi|239743330 PREDICTED: hypothetical protein XP_002342792 [Homo
sapiens]
Length = 88
Score = 179 bits (453), Expect = 5e-46
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS 60
MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS
Sbjct: 1 MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS 60
Query: 61 LQRAEGGRPGRGGRQRRWEEKCKKKNKR 88
LQRAEGGRPGRGGRQRRWEEKCKKKNKR
Sbjct: 61 LQRAEGGRPGRGGRQRRWEEKCKKKNKR 88
>gi|239509013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 179 bits (453), Expect = 5e-46
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS 60
MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS
Sbjct: 1 MRTLLNIFPTASKSGVAVDQVDLLGVRVVHLLLAQLVCHGLVVGLVDVALFPDGNGVEMS 60
Query: 61 LQRAEGGRPGRGGRQRRWEEKCKKKNKR 88
LQRAEGGRPGRGGRQRRWEEKCKKKNKR
Sbjct: 61 LQRAEGGRPGRGGRQRRWEEKCKKKNKR 88
>gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo
sapiens]
Length = 392
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 32 LLAQLVCHGLVVGLVDVALFPDGNGVEMSLQRAEGGRPGRGGRQRRWEE 80
L A+L CH L V +D +PDG+ V +++ EGG G G Q +++E
Sbjct: 77 LRARLPCH-LAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQVKYDE 124
>gi|20336302 DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Homo
sapiens]
Length = 707
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 51 FPDGNGVEMSLQRAEGGRPGRGGRQRR 77
FP G V M L GGR G GGR+++
Sbjct: 26 FPPGRQVVMLLTAGSGGRGGGGGRRQQ 52
>gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 54 GNGVEMSLQRAEGGRPGRGGRQRRWE 79
G+G EMS + + R G G R + WE
Sbjct: 535 GSGAEMSCELSSSHRTGWGRRTQGWE 560
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 53 DGNGVEMSLQRAEGGRPGRGGRQRR 77
DG+G +L A G PGRGGR R
Sbjct: 168 DGDGASPALS-APGREPGRGGRPAR 191
>gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 54 GNGVEMSLQRAEGGRPGRGGRQRRWE 79
G+G EMS + + R G G R + WE
Sbjct: 535 GSGAEMSCELSSSHRTGWGRRTQGWE 560
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 53 DGNGVEMSLQRAEGGRPGRGGRQRR 77
DG+G +L A G PGRGGR R
Sbjct: 160 DGDGASPALS-APGREPGRGGRPAR 183
>gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 54 GNGVEMSLQRAEGGRPGRGGRQRRWE 79
G+G EMS + + R G G R + WE
Sbjct: 535 GSGAEMSCELSSSHRTGWGRRTQGWE 560
>gi|224282125 tRNA-yW synthesizing protein 1 homolog B isoform 2
[Homo sapiens]
Length = 471
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 66 GGRPGRGGRQRRWEEKCKKK 85
GG PG G + +WEE KK+
Sbjct: 437 GGTPGHGVTEIQWEEWIKKR 456
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.141 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,485,667
Number of Sequences: 37866
Number of extensions: 133753
Number of successful extensions: 399
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 12
length of query: 88
length of database: 18,247,518
effective HSP length: 60
effective length of query: 28
effective length of database: 15,975,558
effective search space: 447315624
effective search space used: 447315624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.