Search of human proteins with 239742990

Search of human proteins with 239742990

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742990 PREDICTED: hypothetical protein XP_002342728 [Homo
sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754394 PREDICTED: hypothetical protein XP_002345990 [Homo ...   260   2e-70
gi|239748968 PREDICTED: hypothetical protein XP_002346842 [Homo ...   260   2e-70
gi|239742990 PREDICTED: hypothetical protein XP_002342728 [Homo ...   260   2e-70
gi|188497683 FAST kinase domains 1 [Homo sapiens]                      30   0.39 
gi|110578649 cache domain containing 1 [Homo sapiens]                  27   4.4  
gi|23397500 F-box protein 39 [Homo sapiens]                            27   5.7  
gi|151301150 sel-1 suppressor of lin-12-like 2 [Homo sapiens]          27   5.7  
gi|24308527 stereocilin [Homo sapiens]                                 26   9.7  
gi|154350196 vesicular nucleotide transporter SLC17A9 [Homo sapi...    26   9.7  

>gi|239754394 PREDICTED: hypothetical protein XP_002345990 [Homo
           sapiens]
          Length = 128

 Score =  260 bits (665), Expect = 2e-70
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MSHLQSHKRTVIDSQLTFQEREEIIKSCNSRSHFILHGAPALLSEQFLLMADWGVQSLCI 60
           MSHLQSHKRTVIDSQLTFQEREEIIKSCNSRSHFILHGAPALLSEQFLLMADWGVQSLCI
Sbjct: 1   MSHLQSHKRTVIDSQLTFQEREEIIKSCNSRSHFILHGAPALLSEQFLLMADWGVQSLCI 60

Query: 61  KLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQT 120
           KLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQT
Sbjct: 61  KLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQT 120

Query: 121 VNNNEPAL 128
           VNNNEPAL
Sbjct: 121 VNNNEPAL 128


>gi|239748968 PREDICTED: hypothetical protein XP_002346842 [Homo
           sapiens]
          Length = 128

 Score =  260 bits (665), Expect = 2e-70
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MSHLQSHKRTVIDSQLTFQEREEIIKSCNSRSHFILHGAPALLSEQFLLMADWGVQSLCI 60
           MSHLQSHKRTVIDSQLTFQEREEIIKSCNSRSHFILHGAPALLSEQFLLMADWGVQSLCI
Sbjct: 1   MSHLQSHKRTVIDSQLTFQEREEIIKSCNSRSHFILHGAPALLSEQFLLMADWGVQSLCI 60

Query: 61  KLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQT 120
           KLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQT
Sbjct: 61  KLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQT 120

Query: 121 VNNNEPAL 128
           VNNNEPAL
Sbjct: 121 VNNNEPAL 128


>gi|239742990 PREDICTED: hypothetical protein XP_002342728 [Homo
           sapiens]
          Length = 128

 Score =  260 bits (665), Expect = 2e-70
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MSHLQSHKRTVIDSQLTFQEREEIIKSCNSRSHFILHGAPALLSEQFLLMADWGVQSLCI 60
           MSHLQSHKRTVIDSQLTFQEREEIIKSCNSRSHFILHGAPALLSEQFLLMADWGVQSLCI
Sbjct: 1   MSHLQSHKRTVIDSQLTFQEREEIIKSCNSRSHFILHGAPALLSEQFLLMADWGVQSLCI 60

Query: 61  KLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQT 120
           KLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQT
Sbjct: 61  KLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQT 120

Query: 121 VNNNEPAL 128
           VNNNEPAL
Sbjct: 121 VNNNEPAL 128


>gi|188497683 FAST kinase domains 1 [Homo sapiens]
          Length = 847

 Score = 30.4 bits (67), Expect = 0.39
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 43  LSEQFLLMAD--WGVQSLCIKLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLK 100
           L    LLM++   G Q+L + L     +E  +SC I   + +  KHL  +  L+L K  +
Sbjct: 325 LKSTMLLMSEDLTGEQALAV-LGAMGDMESRNSCLIKRVTSVLHKHLDGYKPLELLKITQ 383

Query: 101 PLTDLLPQRR 110
            LT L  QR+
Sbjct: 384 ELTFLHFQRK 393


>gi|110578649 cache domain containing 1 [Homo sapiens]
          Length = 1223

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 65  WESIEESSS--CQIILFSQIPLKHLSSFLDLDLAKYLKPLTDLLPQRRHVNVLHYCQTVN 122
           W+ ++++S   C +++  +IP+K L +   +  +K L    DLL Q      LH+ Q   
Sbjct: 541 WKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLGQPS--ACLHFKQLAT 598

Query: 123 NNEPAL 128
              P +
Sbjct: 599 LESPTI 604


>gi|23397500 F-box protein 39 [Homo sapiens]
          Length = 442

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 77  ILFSQIPLKHLSS----FLDLDLAKYLKP-LTDLLPQRRHVNVLHYCQTVNNNE 125
           IL  +IP++ +S     F D D +  ++P L DLLP  RH      C+  NN+E
Sbjct: 301 ILLQEIPIRSISLRSCYFSDPDCS--MRPTLIDLLPTFRHTLQKLTCEFNNNHE 352


>gi|151301150 sel-1 suppressor of lin-12-like 2 [Homo sapiens]
          Length = 688

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 48  LLMADWGVQSLCIKLSGWESIEESSSCQIILFSQIPLKHLSSF---LDLDLAKYL 99
           LL  ++GVQ++   +  +ES+ +  SC+    +Q  L  LSS+   ++ D AK L
Sbjct: 153 LLFGNFGVQNITAAIQLYESLAKEGSCK----AQNALGFLSSYGIGMEYDQAKAL 203


>gi|24308527 stereocilin [Homo sapiens]
          Length = 1775

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 46   QFLLMADWGVQSLCIKLSGWESIE 69
            Q L++ DWGV S   ++ GW + +
Sbjct: 1544 QELILVDWGVLSTLGQIDGWSTTQ 1567


>gi|154350196 vesicular nucleotide transporter SLC17A9 [Homo
           sapiens]
          Length = 436

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 46  QFLLMADWGVQSLCIKLSGWESIEESSSCQIILFSQIPLKHLSSFLDLDLAKYLKPLTDL 105
           QF  +    V SL ++  GW+SI   S    +L+     ++L S  DL LA  L  L   
Sbjct: 164 QFGTLLTGAVGSLLLEWYGWQSIFYFSGGLTLLWVWYVYRYLLSEKDLILA--LGVLAQS 221

Query: 106 LPQRRHVNV 114
            P  RH  V
Sbjct: 222 RPVSRHSRV 230


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,808,395
Number of Sequences: 37866
Number of extensions: 181178
Number of successful extensions: 353
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 9
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.