Search of human proteins with 239742731

Search of human proteins with 239742731

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742731 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
         (90 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754179 PREDICTED: hypothetical protein [Homo sapiens]           187   1e-48
gi|239748709 PREDICTED: hypothetical protein XP_002346776 [Homo ...   187   1e-48
gi|239742731 PREDICTED: hypothetical protein isoform 1 [Homo sap...   187   1e-48
gi|21493045 A-kinase anchor protein 6 [Homo sapiens]                   27   2.6  
gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]        27   3.4  
gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]        27   3.4  
gi|126116589 fibrocystin L [Homo sapiens]                              27   4.5  
gi|4507943 exportin 1 [Homo sapiens]                                   25   10.0 
gi|28274701 zinc finger protein 511 [Homo sapiens]                     25   10.0 

>gi|239754179 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score =  187 bits (476), Expect = 1e-48
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MGGSLCCCGEGEGFFYRQNWRFLSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKDLSF 60
          MGGSLCCCGEGEGFFYRQNWRFLSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKDLSF
Sbjct: 1  MGGSLCCCGEGEGFFYRQNWRFLSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKDLSF 60

Query: 61 EKGVKPVAAELPGESSEQVIAIVEVRSFFD 90
          EKGVKPVAAELPGESSEQVIAIVEVRSFFD
Sbjct: 61 EKGVKPVAAELPGESSEQVIAIVEVRSFFD 90


>gi|239748709 PREDICTED: hypothetical protein XP_002346776 [Homo
          sapiens]
          Length = 90

 Score =  187 bits (476), Expect = 1e-48
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MGGSLCCCGEGEGFFYRQNWRFLSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKDLSF 60
          MGGSLCCCGEGEGFFYRQNWRFLSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKDLSF
Sbjct: 1  MGGSLCCCGEGEGFFYRQNWRFLSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKDLSF 60

Query: 61 EKGVKPVAAELPGESSEQVIAIVEVRSFFD 90
          EKGVKPVAAELPGESSEQVIAIVEVRSFFD
Sbjct: 61 EKGVKPVAAELPGESSEQVIAIVEVRSFFD 90


>gi|239742731 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 90

 Score =  187 bits (476), Expect = 1e-48
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MGGSLCCCGEGEGFFYRQNWRFLSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKDLSF 60
          MGGSLCCCGEGEGFFYRQNWRFLSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKDLSF
Sbjct: 1  MGGSLCCCGEGEGFFYRQNWRFLSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKDLSF 60

Query: 61 EKGVKPVAAELPGESSEQVIAIVEVRSFFD 90
          EKGVKPVAAELPGESSEQVIAIVEVRSFFD
Sbjct: 61 EKGVKPVAAELPGESSEQVIAIVEVRSFFD 90


>gi|21493045 A-kinase anchor protein 6 [Homo sapiens]
          Length = 2319

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 23   LSLDSWDLIQAAHSTHSAIQLYSMHSGISHLLRKD-LSFEKGVKPVAAELPGESSEQVIA 81
            L +DS DL+ +        + YS+   I HL + + LS  + +K     LP +  E+V +
Sbjct: 981  LVMDSHDLMMSEEQQQHLYKRYSVEMSIRHLKKTELLSKVEALKKGGVLLPNDLLEKVDS 1040

Query: 82   IVE 84
            I E
Sbjct: 1041 INE 1043


>gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]
          Length = 930

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 27  SWDLIQAAHSTHSAIQLYSMHSGISHLLRKDL 58
           S+D+   A STHS I +Y + S  S L  + L
Sbjct: 870 SFDVFHRAFSTHSGITVYDLPSSSSSLFGESL 901


>gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]
          Length = 775

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 27  SWDLIQAAHSTHSAIQLYSMHSGISHLLRKDL 58
           S+D+   A STHS I +Y + S  S L  + L
Sbjct: 715 SFDVFHRAFSTHSGITVYDLPSSSSSLFGESL 746


>gi|126116589 fibrocystin L [Homo sapiens]
          Length = 4243

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 14  FFYRQNWRFLSLDSWDLIQAAHS-THSAIQLYSMH 47
           F Y  NW +  +D  DL++  ++ T+ ++Q  S+H
Sbjct: 782 FAYGNNWTYTCIDLLDLVRTKYTGTNVSLQRISLH 816


>gi|4507943 exportin 1 [Homo sapiens]
          Length = 1071

 Score = 25.4 bits (54), Expect = 10.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 15  FYRQNWRFLSLDSWDLIQAAHSTHSAIQ 42
           F R +W+FL      L +  H TH  +Q
Sbjct: 554 FLRAHWKFLKTVVNKLFEFMHETHDGVQ 581


>gi|28274701 zinc finger protein 511 [Homo sapiens]
          Length = 252

 Score = 25.4 bits (54), Expect = 10.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 52  HLLRKDLSFEKGVK---PVAAELPGESSEQ 78
           HL   D  F+K  K   P +AE PG+S E+
Sbjct: 169 HLYPADFRFDKPKKSRSPASAEAPGDSGER 198


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,556,068
Number of Sequences: 37866
Number of extensions: 124666
Number of successful extensions: 277
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 9
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.