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Search of human proteins with 239742578
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742578 PREDICTED: hypothetical protein XP_002342558 [Homo
sapiens]
(91 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742588 PREDICTED: hypothetical protein XP_002342566 [Homo ... 197 1e-51
gi|239742578 PREDICTED: hypothetical protein XP_002342558 [Homo ... 197 1e-51
gi|239742576 PREDICTED: hypothetical protein XP_002342559 [Homo ... 197 1e-51
gi|239742574 PREDICTED: hypothetical protein XP_002342560 [Homo ... 197 1e-51
gi|239742572 PREDICTED: hypothetical protein XP_002342561 [Homo ... 197 1e-51
gi|239742562 PREDICTED: hypothetical protein XP_002342557 [Homo ... 197 1e-51
gi|239742558 PREDICTED: hypothetical protein XP_002342553 [Homo ... 197 1e-51
gi|239742590 PREDICTED: hypothetical protein XP_002342565 [Homo ... 196 3e-51
gi|239742582 PREDICTED: hypothetical protein XP_002342563 [Homo ... 196 3e-51
gi|239742907 PREDICTED: hypothetical protein XP_002342647 [Homo ... 192 5e-50
gi|239754136 PREDICTED: similar to PRED15 [Homo sapiens] 188 9e-49
gi|239742633 PREDICTED: hypothetical protein XP_002342584 [Homo ... 187 1e-48
gi|239742637 PREDICTED: hypothetical protein XP_002342585 [Homo ... 187 2e-48
gi|239753728 PREDICTED: similar to hCG1997218 [Homo sapiens] 80 5e-16
gi|239748245 PREDICTED: hypothetical protein XP_002346621 [Homo ... 80 5e-16
gi|239742146 PREDICTED: hypothetical protein XP_002342415 [Homo ... 80 5e-16
gi|157502184 kinesin family member 6 [Homo sapiens] 30 0.32
gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 28 1.2
gi|31317305 M-phase phosphoprotein 10 [Homo sapiens] 27 2.7
gi|4506121 protein Z, vitamin K-dependent plasma glycoprotein [H... 26 6.1
gi|167860126 serine (or cysteine) proteinase inhibitor, clade B ... 26 6.1
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 26 7.9
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 26 7.9
>gi|239742588 PREDICTED: hypothetical protein XP_002342566 [Homo
sapiens]
Length = 91
Score = 197 bits (502), Expect = 1e-51
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
>gi|239742578 PREDICTED: hypothetical protein XP_002342558 [Homo
sapiens]
Length = 91
Score = 197 bits (502), Expect = 1e-51
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
>gi|239742576 PREDICTED: hypothetical protein XP_002342559 [Homo
sapiens]
Length = 91
Score = 197 bits (502), Expect = 1e-51
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
>gi|239742574 PREDICTED: hypothetical protein XP_002342560 [Homo
sapiens]
Length = 91
Score = 197 bits (502), Expect = 1e-51
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
>gi|239742572 PREDICTED: hypothetical protein XP_002342561 [Homo
sapiens]
Length = 91
Score = 197 bits (502), Expect = 1e-51
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
>gi|239742562 PREDICTED: hypothetical protein XP_002342557 [Homo
sapiens]
Length = 91
Score = 197 bits (502), Expect = 1e-51
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
>gi|239742558 PREDICTED: hypothetical protein XP_002342553 [Homo
sapiens]
Length = 91
Score = 197 bits (502), Expect = 1e-51
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
>gi|239742590 PREDICTED: hypothetical protein XP_002342565 [Homo
sapiens]
Length = 91
Score = 196 bits (498), Expect = 3e-51
Identities = 90/91 (98%), Positives = 90/91 (98%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSE
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEG 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
>gi|239742582 PREDICTED: hypothetical protein XP_002342563 [Homo
sapiens]
Length = 91
Score = 196 bits (498), Expect = 3e-51
Identities = 90/91 (98%), Positives = 90/91 (98%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSE
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEG 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
>gi|239742907 PREDICTED: hypothetical protein XP_002342647 [Homo
sapiens]
Length = 91
Score = 192 bits (488), Expect = 5e-50
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDM+NKVQAEVVSE
Sbjct: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMNNKVQAEVVSEG 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWSKVTLTMQRHCRHC PVLETGIR
Sbjct: 61 DEEFVGKWSKVTLTMQRHCRHCPPVLETGIR 91
>gi|239754136 PREDICTED: similar to PRED15 [Homo sapiens]
Length = 91
Score = 188 bits (477), Expect = 9e-49
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWN LEGSEEDRKMWESLELPRDLLNGFDQNV+SDMDNKVQAEVVS+
Sbjct: 1 MWKQLWKWVTGRGWNRLEGSEEDRKMWESLELPRDLLNGFDQNVHSDMDNKVQAEVVSDG 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWS+VTLT+QRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSEVTLTIQRHCRHCAPVLETGIR 91
>gi|239742633 PREDICTED: hypothetical protein XP_002342584 [Homo
sapiens]
Length = 91
Score = 187 bits (476), Expect = 1e-48
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWN LEGSEEDRKMWESLELPRDLLNGFDQNV+SDMDNKVQAEVVS+
Sbjct: 1 MWKQLWKWVTGRGWNRLEGSEEDRKMWESLELPRDLLNGFDQNVHSDMDNKVQAEVVSDR 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWS+VTLT+QRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSEVTLTIQRHCRHCAPVLETGIR 91
>gi|239742637 PREDICTED: hypothetical protein XP_002342585 [Homo
sapiens]
Length = 91
Score = 187 bits (474), Expect = 2e-48
Identities = 85/91 (93%), Positives = 88/91 (96%)
Query: 1 MWKQLWKWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEA 60
MWKQLWKWVTGRGWN LEGSEEDRKMWESLELPRDLLN FDQNV+SDMDNKVQAEVVS+
Sbjct: 1 MWKQLWKWVTGRGWNRLEGSEEDRKMWESLELPRDLLNDFDQNVHSDMDNKVQAEVVSDG 60
Query: 61 DEEFVGKWSKVTLTMQRHCRHCAPVLETGIR 91
DEEFVGKWS+VTLTMQRHCRHCAPVLETGIR
Sbjct: 61 DEEFVGKWSEVTLTMQRHCRHCAPVLETGIR 91
>gi|239753728 PREDICTED: similar to hCG1997218 [Homo sapiens]
Length = 171
Score = 79.7 bits (195), Expect = 5e-16
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
>gi|239748245 PREDICTED: hypothetical protein XP_002346621 [Homo
sapiens]
Length = 171
Score = 79.7 bits (195), Expect = 5e-16
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
>gi|239742146 PREDICTED: hypothetical protein XP_002342415 [Homo
sapiens]
Length = 171
Score = 79.7 bits (195), Expect = 5e-16
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 26 MWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
MWESLE PRDLLNGFDQN ++DMDN++QAEVVS+ DEE VG WSK
Sbjct: 1 MWESLEPPRDLLNGFDQNADNDMDNEIQAEVVSDGDEELVGNWSK 45
>gi|157502184 kinesin family member 6 [Homo sapiens]
Length = 814
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 21 EEDRKMWESLE--LPRDLLNGFDQNVNSDMDNKVQAEVVSEADEEFV 65
+ED K+ SLE LPRDL +GF N K Q +A++E V
Sbjct: 27 DEDEKLIPSLEIILPRDLADGFVNNKRESYKFKFQRIFDQDANQETV 73
>gi|60498978 elastin microfibril interfacer 2 [Homo sapiens]
Length = 1053
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 44 VNSDMDNKVQAEVVSEADEEFVGKW----SKVTLTMQRHCRHCAPVLET 88
+N +DN+ +V E D +F KW +++ +T + HC + ET
Sbjct: 426 LNGRLDNEFDRLIVPEPDVDFDAKWNELDARINVTEKNAEEHCFYIEET 474
>gi|31317305 M-phase phosphoprotein 10 [Homo sapiens]
Length = 681
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 22 EDRKMWESLELPRDLLNGFDQNVNSDMDNKVQAEVVSEADEE 63
+D ++W+ LEL + + + QN S+ N ++ E++E+
Sbjct: 72 DDEQIWQQLELQNEPILQYFQNAVSETINDEDISLLPESEEQ 113
>gi|4506121 protein Z, vitamin K-dependent plasma glycoprotein [Homo
sapiens]
Length = 400
Score = 26.2 bits (56), Expect = 6.1
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 28 ESLELPRD--LLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSKVTLTMQRHC 79
E L +PR LL+G+ +N +D+ N + V+ + E G+ VT+T + +C
Sbjct: 289 EHLLIPRTRGLLSGWARN-GTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYC 341
>gi|167860126 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 5 [Homo sapiens]
Length = 375
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 34 RDLLNGFDQNVNSDMDNKVQAEVVSEADEEFVGKWSK 70
+DL +G +N+ +D Q +++ FVGKW K
Sbjct: 137 KDLTDGHFENILADNSVNDQTKILVVNAAYFVGKWMK 173
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 25.8 bits (55), Expect = 7.9
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 KWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSD-----------MDNKV--- 52
K + + N + E +KMW+ L+L LN D V MDN +
Sbjct: 3704 KMLQQKSKNIEKAQEIQKKMWDELDLWHSKLNELDSEVQDIVEQDPGQAQEWMDNLMIPF 3763
Query: 53 -QAEVVSEADEEFVGKWSKVTLTMQRH 78
Q + VS+ E + +K T+ M+ +
Sbjct: 3764 QQYQQVSQRAECRTSQLNKATVKMEEY 3790
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 25.8 bits (55), Expect = 7.9
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 KWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNVNSD-----------MDNKV--- 52
K + + N + E +KMW+ L+L LN D V MDN +
Sbjct: 3704 KMLQQKSKNIEKAQEIQKKMWDELDLWHSKLNELDSEVQDIVEQDPGQAQEWMDNLMIPF 3763
Query: 53 -QAEVVSEADEEFVGKWSKVTLTMQRH 78
Q + VS+ E + +K T+ M+ +
Sbjct: 3764 QQYQQVSQRAECRTSQLNKATVKMEEY 3790
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,690,101
Number of Sequences: 37866
Number of extensions: 131518
Number of successful extensions: 373
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 23
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.