Search of human proteins with 239742568

Search of human proteins with 239742568

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742568 PREDICTED: hypothetical protein XP_002342577 [Homo
sapiens]
         (99 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239742568 PREDICTED: hypothetical protein XP_002342577 [Homo ...   211   8e-56
gi|239742564 PREDICTED: hypothetical protein XP_002342575 [Homo ...   188   7e-49
gi|239748531 PREDICTED: similar to hCG1820960 [Homo sapiens]           94   3e-20
gi|4504223 glucuronidase, beta [Homo sapiens]                          89   7e-19
gi|62988324 tenascin N [Homo sapiens]                                  30   0.32 
gi|4557643 3-hydroxy-3-methylglutaryl-Coenzyme A reductase isofo...    27   4.6  
gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]    27   4.6  
gi|225007652 processing of precursor 1 [Homo sapiens]                  26   6.0  
gi|225007650 processing of precursor 1 [Homo sapiens]                  26   6.0  
gi|225007648 processing of precursor 1 [Homo sapiens]                  26   6.0  
gi|239746677 PREDICTED: preferentially expressed antigen in mela...    26   6.0  
gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens]       26   6.0  

>gi|239742568 PREDICTED: hypothetical protein XP_002342577 [Homo
          sapiens]
          Length = 99

 Score =  211 bits (538), Expect = 8e-56
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MMISNFSLAVFTLASDPPLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQ 60
          MMISNFSLAVFTLASDPPLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQ
Sbjct: 1  MMISNFSLAVFTLASDPPLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQ 60

Query: 61 CKWQFSAWDNVPVLIFSGCLAHSGHFGCKNIGNKGGNLV 99
          CKWQFSAWDNVPVLIFSGCLAHSGHFGCKNIGNKGGNLV
Sbjct: 61 CKWQFSAWDNVPVLIFSGCLAHSGHFGCKNIGNKGGNLV 99


>gi|239742564 PREDICTED: hypothetical protein XP_002342575 [Homo
           sapiens]
          Length = 142

 Score =  188 bits (478), Expect = 7e-49
 Identities = 98/142 (69%), Positives = 98/142 (69%), Gaps = 44/142 (30%)

Query: 2   MISNFSLAVFTLAS--------------------------------------------DP 17
           MISNFSLAVFTLAS                                            DP
Sbjct: 1   MISNFSLAVFTLASVSPAVPTAPSEDRYFGHHQVDLYFYLTFTILPVLTLNSLCLESQDP 60

Query: 18  PLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFS 77
           PLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFS
Sbjct: 61  PLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFS 120

Query: 78  GCLAHSGHFGCKNIGNKGGNLV 99
           GCLAHSGHFGCKNIGNKGGNLV
Sbjct: 121 GCLAHSGHFGCKNIGNKGGNLV 142


>gi|239748531 PREDICTED: similar to hCG1820960 [Homo sapiens]
          Length = 86

 Score = 93.6 bits (231), Expect = 3e-20
 Identities = 44/61 (72%), Positives = 49/61 (80%)

Query: 2  MISNFSLAVFTLASDPPLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQC 61
          M+  ++        DPPLMFSEE +KSLLEQYHLGL+QKRRKYVVGELIWNFADFMTNQ 
Sbjct: 1  MVCGYAPLFILFEKDPPLMFSEEYQKSLLEQYHLGLNQKRRKYVVGELIWNFADFMTNQS 60

Query: 62 K 62
          K
Sbjct: 61 K 61


>gi|4504223 glucuronidase, beta [Homo sapiens]
          Length = 651

 Score = 89.0 bits (219), Expect = 7e-19
 Identities = 41/45 (91%), Positives = 43/45 (95%)

Query: 16  DPPLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQ 60
           DPPLMF+EE +KSLLEQYHLGLDQKRRKYVVGELIWNFADFMT Q
Sbjct: 552 DPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQ 596


>gi|62988324 tenascin N [Homo sapiens]
          Length = 1299

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 19   LMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFSAWDNVPVLIFSG 78
            L  + E   ++ + + +   ++R K  VG+      D +T    W+F+ +D    +  S 
Sbjct: 1164 LQTANESAYAIYDFFQVASSKERYKLTVGKYRGTAGDALTYHNGWKFTTFDRDNDIALSN 1223

Query: 79   C-LAHSGHFGCKN 90
            C L H G +  KN
Sbjct: 1224 CALTHHGGWWYKN 1236


>gi|4557643 3-hydroxy-3-methylglutaryl-Coenzyme A reductase isoform
           1 [Homo sapiens]
          Length = 888

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 71  VPVLIFSGCLAHSGHFGCKNIGNKGG 96
           VP+    GCL  S + GC+ IG  GG
Sbjct: 553 VPMATTEGCLVASTNRGCRAIGLGGG 578


>gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]
          Length = 647

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 30  LEQYHLGLDQKRRKYVVGELIWNFADFMTNQCKWQFS 66
           LEQ HL LD KR   +  +L WN +         +FS
Sbjct: 122 LEQEHLDLDPKRGLALPEKLFWNTSGLSQQAAAPEFS 158


>gi|225007652 processing of precursor 1 [Homo sapiens]
          Length = 1024

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 19  LMFSEEDRKSLLEQYHLGLDQKRRKYV 45
           ++F+EE  K+LLE+Y      KR  YV
Sbjct: 670 MLFAEEQAKNLLEKYKRRPPAKRPNYV 696


>gi|225007650 processing of precursor 1 [Homo sapiens]
          Length = 1024

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 19  LMFSEEDRKSLLEQYHLGLDQKRRKYV 45
           ++F+EE  K+LLE+Y      KR  YV
Sbjct: 670 MLFAEEQAKNLLEKYKRRPPAKRPNYV 696


>gi|225007648 processing of precursor 1 [Homo sapiens]
          Length = 1024

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 19  LMFSEEDRKSLLEQYHLGLDQKRRKYV 45
           ++F+EE  K+LLE+Y      KR  YV
Sbjct: 670 MLFAEEQAKNLLEKYKRRPPAKRPNYV 696


>gi|239746677 PREDICTED: preferentially expressed antigen in
           melanoma-like [Homo sapiens]
          Length = 520

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 50  IWNFADFMTNQCKWQFSAWDNVPVLIFSGCLAHSGH 85
           I+N   F     KW FS+W   P   F   L   GH
Sbjct: 285 IFNLRSFKLFYYKWAFSSWVRRPSSYFFSQLTMLGH 320


>gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens]
          Length = 566

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 69  DNVPVLIFSGCLAHSGHFGCKNIGNKGGNLV 99
           +  PV++ + C  HSG  G     N  GNL+
Sbjct: 464 NGTPVMLQTTCAVHSGSSGGPLFSNHSGNLL 494


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,022,843
Number of Sequences: 37866
Number of extensions: 148666
Number of successful extensions: 353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 13
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.