Guide to the Human Genome
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Name: SAAL1 Sequence: fasta or formatted (474aa) NCBI GI: 116235444
Description:

serum amyloid A-like 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         22           2
 C cysteine            3.4         16           1
 D aspartate           7.8         37           2
 E glutamate           9.9         47           5
 F phenylalanine       3.8         18           1
 G glycine             3.4         16           2
 H histidine           1.5          7           1
 I isoleucine          6.1         29           2
 K lysine              5.7         27           2
 L leucine            12.0         57           3
 M methionine          2.1         10           1
 N asparagine          3.4         16           1
 P proline             5.1         24           4
 Q glutamine           6.1         29           1
 R arginine            2.7         13           1
 S serine              7.8         37           3
 T threonine           4.0         19           2
 V valine              7.8         37           2
 W tryptophan          1.3          6           1
 Y tyrosine            1.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serum amyloid A-like 1 
EPS15                 0.017   epidermal growth factor receptor pathway substrate 15...
MOCOS                 0.008   molybdenum cofactor sulfurase 
RASA1                 0.008   RAS p21 protein activator 1 isoform 1 
RASA1                 0.008   RAS p21 protein activator 1 isoform 2 
GBP7                  0.008   guanylate binding protein 4-like 
BAG1                  0.008   BCL2-associated athanogene isoform 1L 
KIF5C                 0.006   kinesin family member 5C 
CRIM1                 0.006   cysteine-rich motor neuron 1 
IGFBP3                0.005   insulin-like growth factor binding protein 3 isoform...
ZFHX3                 0.005   AT-binding transcription factor 1 
RIF1                  0.005   RAP1 interacting factor 1 
COG6                  0.005   component of oligomeric golgi complex 6 isoform 2 [...
COG6                  0.005   component of oligomeric golgi complex 6 isoform 1 [H...
USP24                 0.005   ubiquitin specific protease 24 
EIF5B                 0.005   eukaryotic translation initiation factor 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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