Search of human proteins with 116235444

Search of human proteins with 116235444

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116235444 serum amyloid A-like 1 [Homo sapiens]
         (474 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116235444 serum amyloid A-like 1 [Homo sapiens]                    951   0.0  
gi|4503593 epidermal growth factor receptor pathway substrate 15...    41   0.002
gi|157388923 molybdenum cofactor sulfurase [Homo sapiens]              32   0.96 
gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens]        32   0.96 
gi|12545406 RAS p21 protein activator 1 isoform 2 [Homo sapiens]       32   0.96 
gi|148234215 guanylate binding protein 4-like [Homo sapiens]           32   0.96 
gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens]      32   1.6  
gi|4758650 kinesin family member 5C [Homo sapiens]                     31   2.8  
gi|10092639 cysteine-rich motor neuron 1 [Homo sapiens]                31   2.8  
gi|62243068 insulin-like growth factor binding protein 3 isoform...    30   4.8  
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          30   4.8  
gi|56676335 RAP1 interacting factor 1 [Homo sapiens]                   30   4.8  
gi|223468630 component of oligomeric golgi complex 6 isoform 2 [...    30   6.2  
gi|33457344 component of oligomeric golgi complex 6 isoform 1 [H...    30   6.2  
gi|149192845 ubiquitin specific protease 24 [Homo sapiens]             30   6.2  
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    30   6.2  

>gi|116235444 serum amyloid A-like 1 [Homo sapiens]
          Length = 474

 Score =  951 bits (2458), Expect = 0.0
 Identities = 474/474 (100%), Positives = 474/474 (100%)

Query: 1   MDRNPSPPPPGRDKEEEEEVAGGDCIGSTVYSKHWLFGVLSGLIQIVSPENTKSSSDDEE 60
           MDRNPSPPPPGRDKEEEEEVAGGDCIGSTVYSKHWLFGVLSGLIQIVSPENTKSSSDDEE
Sbjct: 1   MDRNPSPPPPGRDKEEEEEVAGGDCIGSTVYSKHWLFGVLSGLIQIVSPENTKSSSDDEE 60

Query: 61  QLTELDEEMENEICRVWDMSMDEDVALFLQEFNAPDIFMGVLAKSKCPRLREICVGILGN 120
           QLTELDEEMENEICRVWDMSMDEDVALFLQEFNAPDIFMGVLAKSKCPRLREICVGILGN
Sbjct: 61  QLTELDEEMENEICRVWDMSMDEDVALFLQEFNAPDIFMGVLAKSKCPRLREICVGILGN 120

Query: 121 MACFQEICVSISSDKNLGQVLLHCLYDSDPPTLLETSRLLLTCLSQAEVASVWVERIQEH 180
           MACFQEICVSISSDKNLGQVLLHCLYDSDPPTLLETSRLLLTCLSQAEVASVWVERIQEH
Sbjct: 121 MACFQEICVSISSDKNLGQVLLHCLYDSDPPTLLETSRLLLTCLSQAEVASVWVERIQEH 180

Query: 181 PAIYDSICFIMSSSTNVDLLVKVGEVVDKLFDLDEKLMLEWVRNGAAQPLDQPQEESEEQ 240
           PAIYDSICFIMSSSTNVDLLVKVGEVVDKLFDLDEKLMLEWVRNGAAQPLDQPQEESEEQ
Sbjct: 181 PAIYDSICFIMSSSTNVDLLVKVGEVVDKLFDLDEKLMLEWVRNGAAQPLDQPQEESEEQ 240

Query: 241 PVFRLVPCILEAAKQVRSENPEWLDVYMHILQLLTTVDDGIQAIVHCPDTGKDIWNLLFD 300
           PVFRLVPCILEAAKQVRSENPEWLDVYMHILQLLTTVDDGIQAIVHCPDTGKDIWNLLFD
Sbjct: 241 PVFRLVPCILEAAKQVRSENPEWLDVYMHILQLLTTVDDGIQAIVHCPDTGKDIWNLLFD 300

Query: 301 LVCHEFCQSDDPPIILQEQKTVLASVFSVLSAIYASQTEQEYLKIEKVDLPLIDSLIRVL 360
           LVCHEFCQSDDPPIILQEQKTVLASVFSVLSAIYASQTEQEYLKIEKVDLPLIDSLIRVL
Sbjct: 301 LVCHEFCQSDDPPIILQEQKTVLASVFSVLSAIYASQTEQEYLKIEKVDLPLIDSLIRVL 360

Query: 361 QNMEQCQKKPENSAESNTEETKRTDLTQDDFHLKILKDILCEFLSNIFQALTKETVAQGV 420
           QNMEQCQKKPENSAESNTEETKRTDLTQDDFHLKILKDILCEFLSNIFQALTKETVAQGV
Sbjct: 361 QNMEQCQKKPENSAESNTEETKRTDLTQDDFHLKILKDILCEFLSNIFQALTKETVAQGV 420

Query: 421 KEGQLSKQKCSSAFQNLLPFYSPVVEDFIKILREVDKALADDLEKNFPSLKVQT 474
           KEGQLSKQKCSSAFQNLLPFYSPVVEDFIKILREVDKALADDLEKNFPSLKVQT
Sbjct: 421 KEGQLSKQKCSSAFQNLLPFYSPVVEDFIKILREVDKALADDLEKNFPSLKVQT 474


>gi|4503593 epidermal growth factor receptor pathway substrate 15
           isoform A [Homo sapiens]
          Length = 896

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 75/344 (21%), Positives = 138/344 (40%), Gaps = 55/344 (15%)

Query: 84  DVALFLQEFNAPDIFMGVLAKSKCPRLREICVGILGNMACFQEICVSISSDKNLGQVLLH 143
           D A FL++   PD+ +G +        +    GIL     F  + +   +   L   L  
Sbjct: 38  DAAAFLKKSGLPDLILGKIWDLADTDGK----GILNKQEFFVALRLVACAQNGLEVSLSS 93

Query: 144 CLYDSDPPTLLETSR-LLLTCLSQAEVA-SVWVERIQEHPAIYDSIC------------- 188
                 PP   +TS  LL++  S AE+  +V  E   ++ AI+DS+              
Sbjct: 94  LNLAVPPPRFHDTSSPLLISGTSAAELPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKP 153

Query: 189 FIMSSSTNVDLLVKVGEVVDKLFDLDEKLMLEWVRNGAAQPLDQPQEESEEQPVFRLVPC 248
            +++S   VD+L +V E    L D+D   ML+      A  L     E E  P+  L P 
Sbjct: 154 VLLNSKLPVDILGRVWE----LSDIDHDGMLDRDEFAVAMFLVYCALEKEPVPM-SLPPA 208

Query: 249 ILEAAKQVR-----SENPEWLDVYMHILQLLTTVDDGIQA-------------IVH---- 286
           ++  +K+       +E  ++ ++++   + +     G++              + H    
Sbjct: 209 LVPPSKRKTWVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSL 268

Query: 287 -----CPDTGKDIWNLLFDLVCHEFCQSDDPPIILQEQKTVLASVFSVLSAIYASQTEQE 341
                C    KD + L F L+  +  +  DPP +L  +    +   S+   I  S    +
Sbjct: 269 CDTKDCGKLSKDQFALAFHLISQKLIKGIDPPHVLTPEMIPPSDRASLQKNIIGSSPVAD 328

Query: 342 YLKIEKVDL---PLIDSLIRVLQNMEQCQKKPENSAESNTEETK 382
           +  I+++D     ++D L R   N+EQ  K+ E++ +  T E +
Sbjct: 329 FSAIKELDTLNNEIVD-LQREKNNVEQDLKEKEDTIKQRTSEVQ 371


>gi|157388923 molybdenum cofactor sulfurase [Homo sapiens]
          Length = 888

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 51  NTKSSSDDEEQLTELDEEMENEICRVWDMSMDEDVALFL------QEFNAPDIFMGVL-- 102
           NT S  +   QL   DE  + E+  + D+S+     + +      +E    +I +G L  
Sbjct: 743 NTSSILELHRQLNTSDENGKEELFSLKDLSLRFRANIIINGKRAFEEEKWDEISIGSLRF 802

Query: 103 -AKSKCPRLREICVGILG---NMACFQEICVSISSDKNLGQVLLHCLYDSDPPTLLETSR 158
                C R + IC+       N   FQ++  S  +  N G  L+H   D   P  L    
Sbjct: 803 QVLGPCHRCQMICIDQQTGQRNQHVFQKLSESRETKVNFGMYLMHASLDLSSPCFLSVGS 862

Query: 159 LLLTCLSQ 166
            +L  L +
Sbjct: 863 QVLPVLKE 870


>gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens]
          Length = 1047

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 24/124 (19%)

Query: 296 NLLFDLVCHE------FCQSDDPPIILQEQKTVLASVFSVLSAIYASQTEQEYLKI---E 346
           ++L  +  HE       C  +D  I ++++ T L    ++ S +      ++Y+K    +
Sbjct: 754 SILLRIFLHEKLESLLLCTLNDREISMEDEATTLFRATTLASTLM-----EQYMKATATQ 808

Query: 347 KVDLPLIDSLIRVLQNMEQCQKKPENSAESNTEETKRTDLTQDDFHLKILKDILCEFLSN 406
            V   L DS+++++++ + C+  P +  E N  E   T+LT        L +IL E +  
Sbjct: 809 FVHHALKDSILKIMESKQSCELSP-SKLEKN--EDVNTNLTH-------LLNILSELVEK 858

Query: 407 IFQA 410
           IF A
Sbjct: 859 IFMA 862


>gi|12545406 RAS p21 protein activator 1 isoform 2 [Homo sapiens]
          Length = 870

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 24/124 (19%)

Query: 296 NLLFDLVCHE------FCQSDDPPIILQEQKTVLASVFSVLSAIYASQTEQEYLKI---E 346
           ++L  +  HE       C  +D  I ++++ T L    ++ S +      ++Y+K    +
Sbjct: 577 SILLRIFLHEKLESLLLCTLNDREISMEDEATTLFRATTLASTLM-----EQYMKATATQ 631

Query: 347 KVDLPLIDSLIRVLQNMEQCQKKPENSAESNTEETKRTDLTQDDFHLKILKDILCEFLSN 406
            V   L DS+++++++ + C+  P +  E N  E   T+LT        L +IL E +  
Sbjct: 632 FVHHALKDSILKIMESKQSCELSP-SKLEKN--EDVNTNLTH-------LLNILSELVEK 681

Query: 407 IFQA 410
           IF A
Sbjct: 682 IFMA 685


>gi|148234215 guanylate binding protein 4-like [Homo sapiens]
          Length = 638

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 9/105 (8%)

Query: 315 ILQEQKTVLA---SVFSVLSAIYASQTEQEYLKI-EKVDLPLIDSLIRVLQ-NMEQCQKK 369
           ILQ  K + A   ++ +  +   A++ EQE L+  +K    ++++  R  Q N+ Q +KK
Sbjct: 474 ILQSDKALTAGEKAIAAKQAKKEAAEKEQELLRQKQKEQQQMMEAQERSFQENIAQLKKK 533

Query: 370 PENSAESNTEETKRTDLTQDDFHLKILKDILCEFLSNIFQALTKE 414
            E   E+   E ++         +K+L+++L E    IF++L +E
Sbjct: 534 MERERENYMRELRK----MLSHKMKVLEELLTEGFKEIFESLNEE 574


>gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens]
          Length = 345

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 388 QDDFHLKILKDI--LCEFLSNIFQALTKETVAQGVKEGQLSKQKCSSAFQNLLPFYSPVV 445
           Q++  LK LK +    E +++  + L KE    G+++G L K   + A   L       +
Sbjct: 225 QEEVELKKLKHLEKSVEKIADQLEELNKELT--GIQQGFLPKDLQAEALCKLDRRVKATI 282

Query: 446 EDFIKILREVDKALADDLEKNFPSLKVQ 473
           E F+KIL E+D  +   L +NF   +++
Sbjct: 283 EQFMKILEEIDTLI---LPENFKDSRLK 307


>gi|4758650 kinesin family member 5C [Homo sapiens]
          Length = 957

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 353 IDSLIRVLQNMEQCQKKPENSAESNTEETKRTDLTQDDFHLKILKDILCEFLSNIFQA-L 411
           I SL   +QNMEQ +++ E S +S +EE  +    Q+  H    +D   E L+ +  A  
Sbjct: 640 IKSLTDYMQNMEQKRRQLEESQDSLSEELAKL-RAQEKMHEVSFQDKEKEHLTRLQDAEE 698

Query: 412 TKETVAQGVKEGQLSKQKCSSAFQNLLPFYSPVVEDFIKILREVDKALADDLEKNFPSLK 471
            K+ + Q ++  + + QK  S  ++ +     ++++ I+ L +  +   + L  ++  LK
Sbjct: 699 MKKALEQQMESHREAHQKQLSRLRDEIEEKQKIIDE-IRDLNQKLQLEQEKLSSDYNKLK 757

Query: 472 VQ 473
           ++
Sbjct: 758 IE 759


>gi|10092639 cysteine-rich motor neuron 1 [Homo sapiens]
          Length = 1036

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 96  DIFMGVLAKSKCPRLREICVGILGNMACFQEICVSISSDKNL---GQVLLHCLYDSDP 150
           DIF+   A+S  P +   C+ I   ++CF E C S+S ++ +   GQ   +C+ D+ P
Sbjct: 759 DIFLA--AESWKPDVCTSCICIDSVISCFSESCPSVSCERPVLRKGQCCPYCIEDTIP 814


>gi|62243068 insulin-like growth factor binding protein 3 isoform b
           precursor [Homo sapiens]
          Length = 291

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 5   PSPPPPGRDKEEEEEVAGGDCIGSTVYSKHWL----FGVLSGLIQIVSPENTKSSS---- 56
           P+PP PG   E EE+ + G     +V S H +    F  L   I I+   + K S     
Sbjct: 129 PAPPAPGNASESEEDRSAGSVESPSVSSTHRVSDPKFHPLHSKIIIIKKGHAKDSQRYKV 188

Query: 57  DDEEQLTE 64
           D E Q T+
Sbjct: 189 DYESQSTD 196


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 14/87 (16%)

Query: 4   NPSPPPPGRD----KEEEEEVAGGDCIGSTVYSKHWLFGVLSGLIQIVSPENTKSSSDDE 59
           +P+    G+D    + E++EV  GDC    V              +    E  + + ++E
Sbjct: 426 SPTKSSEGKDSGAAEGEKQEVGDGDCFSEKVEPAEE---------EAEEEEEEEEAEEEE 476

Query: 60  EQLTELDEEMENEICR-VWDMSMDEDV 85
           E+  E +EE E+E C+ ++   +DE++
Sbjct: 477 EEEEEEEEEEEDEGCKGLFPSELDEEL 503


>gi|56676335 RAP1 interacting factor 1 [Homo sapiens]
          Length = 2472

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 52   TKSSSDDEEQLTELDEEMENEICRVWDMSMDEDV 85
            TK+S  DE +   L  EM+N +C   +MS +E +
Sbjct: 2046 TKTSKPDEAETNMLTAEMDNFVCDTVEMSTEEGI 2079


>gi|223468630 component of oligomeric golgi complex 6 isoform 2
           [Homo sapiens]
          Length = 615

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 340 QEYLKIEKVDLPLIDSLIRVLQNMEQCQKKPENSAESNTEET-----KRTDLTQDDFHLK 394
           +E++ I K     ++S+   +Q M  C +   +  ++  E+T     K T L  +   L+
Sbjct: 88  EEFVSIFKEVKEELESISEDVQAMSNCCQDMTSRLQAAKEQTQDLIVKTTKLQSESQKLE 147

Query: 395 ILKDILCEFLSNIFQALTKETVAQGVKEGQLSKQKCSSAFQNLLPFYSPVVEDFIKILRE 454
           I   +   FLS       + ++ +G +EG                   P+ EDF K L  
Sbjct: 148 IRAQVADAFLSKFQLTSDEMSLLRGTREG-------------------PITEDFFKALGR 188

Query: 455 VDKALADDLE 464
           V K + +D++
Sbjct: 189 V-KQIHNDVK 197


>gi|33457344 component of oligomeric golgi complex 6 isoform 1 [Homo
           sapiens]
          Length = 657

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 340 QEYLKIEKVDLPLIDSLIRVLQNMEQCQKKPENSAESNTEET-----KRTDLTQDDFHLK 394
           +E++ I K     ++S+   +Q M  C +   +  ++  E+T     K T L  +   L+
Sbjct: 88  EEFVSIFKEVKEELESISEDVQAMSNCCQDMTSRLQAAKEQTQDLIVKTTKLQSESQKLE 147

Query: 395 ILKDILCEFLSNIFQALTKETVAQGVKEGQLSKQKCSSAFQNLLPFYSPVVEDFIKILRE 454
           I   +   FLS       + ++ +G +EG                   P+ EDF K L  
Sbjct: 148 IRAQVADAFLSKFQLTSDEMSLLRGTREG-------------------PITEDFFKALGR 188

Query: 455 VDKALADDLE 464
           V K + +D++
Sbjct: 189 V-KQIHNDVK 197


>gi|149192845 ubiquitin specific protease 24 [Homo sapiens]
          Length = 2460

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 24/161 (14%)

Query: 318 EQKTVLASVFSVLSAIYASQTEQEYLKIEKVDLPLIDSLIRVLQNMEQCQKKPENSAESN 377
           +  TV+ ++ ++++A        +   +      LI  ++ VL  +      P +  +  
Sbjct: 373 QSSTVIENIHTIIAAAAVKFNSDQLNHL----FVLIQKVLDVLWELAHLPTLPSSLIQQA 428

Query: 378 TEETKRTDLTQDDFHLKILKDILCEFLSNIFQALTKETVAQGVKEGQLSKQKCSSAFQNL 437
            EE           HL IL D        + +A+ +  + + +++ + S Q  +  F  +
Sbjct: 429 LEE-----------HLTILSDAYA-----VKEAIKRSYIIKCIEDIKRSSQLNNPQFVWV 472

Query: 438 LPFYSPVVE---DFIK-ILREVDKALADDLEKNFPSLKVQT 474
           +P    + E    FIK   ++ DK++  DL+KNF  +K+ T
Sbjct: 473 VPALRQLHEITRSFIKQTYQKQDKSIIQDLKKNFEIVKLVT 513


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 2   DRNPSPPPPGRDKEEEEEVAGGDCIGSTVYSKHWLFGVLSGLIQIVSPENTKSSSDDEEQ 61
           ++  +PPP   ++EE+ E AG D     + S      V    + I   EN +   ++EE+
Sbjct: 482 EKEETPPPVEPEEEEDTEDAGLD-DWEAMASDEETEKVEGNKVHIEVKENPEEEEEEEEE 540

Query: 62  LTELDEEMENE 72
             E DEE E E
Sbjct: 541 -EEEDEESEEE 550


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,085,076
Number of Sequences: 37866
Number of extensions: 860607
Number of successful extensions: 3618
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3607
Number of HSP's gapped (non-prelim): 20
length of query: 474
length of database: 18,247,518
effective HSP length: 106
effective length of query: 368
effective length of database: 14,233,722
effective search space: 5238009696
effective search space used: 5238009696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.