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Search of human proteins with 239741502
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741502 PREDICTED: hypothetical protein XP_002342217 [Homo
sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753076 PREDICTED: similar to acid phosphatase 1, soluble [... 280 2e-76
gi|239741502 PREDICTED: hypothetical protein XP_002342217 [Homo ... 280 2e-76
gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo ... 226 6e-60
gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens] 196 4e-51
gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens] 177 3e-45
gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens] 47 5e-06
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 29 1.3
gi|38201690 RAP2B, member of RAS oncogene family [Homo sapiens] 27 3.8
gi|10518344 RAP2A, member of RAS oncogene family [Homo sapiens] 27 3.8
gi|32129209 RAP2C, member of RAS oncogene family [Homo sapiens] 27 3.8
gi|58219792 RAP1B, member of RAS oncogene family [Homo sapiens] 27 6.4
gi|7661678 RAP1B, member of RAS oncogene family [Homo sapiens] 27 6.4
gi|58331202 RAP1A, member of RAS oncogene family [Homo sapiens] 26 8.4
gi|4506413 RAP1A, member of RAS oncogene family [Homo sapiens] 26 8.4
gi|18375528 UPF3 regulator of nonsense transcripts homolog B iso... 26 8.4
gi|41281583 Histidine acid phosphatase domain containing 1 [Homo... 26 8.4
gi|106879210 Src homology 2 domain containing adaptor protein B ... 26 8.4
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 26 8.4
>gi|239753076 PREDICTED: similar to acid phosphatase 1, soluble
[Homo sapiens]
Length = 134
Score = 280 bits (717), Expect = 2e-76
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MGPKQLSADTMMDGAAEAHTSTLRKEKPGTPPDSRGQSFTERHGIPMSHVARQITKENFA 60
MGPKQLSADTMMDGAAEAHTSTLRKEKPGTPPDSRGQSFTERHGIPMSHVARQITKENFA
Sbjct: 1 MGPKQLSADTMMDGAAEAHTSTLRKEKPGTPPDSRGQSFTERHGIPMSHVARQITKENFA 60
Query: 61 KFDYIPCMDDSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQ 120
KFDYIPCMDDSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQ
Sbjct: 61 KFDYIPCMDDSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQ 120
Query: 121 LCVRCYRAFLEKAH 134
LCVRCYRAFLEKAH
Sbjct: 121 LCVRCYRAFLEKAH 134
>gi|239741502 PREDICTED: hypothetical protein XP_002342217 [Homo
sapiens]
Length = 134
Score = 280 bits (717), Expect = 2e-76
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MGPKQLSADTMMDGAAEAHTSTLRKEKPGTPPDSRGQSFTERHGIPMSHVARQITKENFA 60
MGPKQLSADTMMDGAAEAHTSTLRKEKPGTPPDSRGQSFTERHGIPMSHVARQITKENFA
Sbjct: 1 MGPKQLSADTMMDGAAEAHTSTLRKEKPGTPPDSRGQSFTERHGIPMSHVARQITKENFA 60
Query: 61 KFDYIPCMDDSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQ 120
KFDYIPCMDDSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQ
Sbjct: 61 KFDYIPCMDDSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQ 120
Query: 121 LCVRCYRAFLEKAH 134
LCVRCYRAFLEKAH
Sbjct: 121 LCVRCYRAFLEKAH 134
>gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo
sapiens]
Length = 215
Score = 226 bits (575), Expect = 6e-60
Identities = 106/108 (98%), Positives = 107/108 (99%)
Query: 27 KPGTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTC 86
+ GTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTC
Sbjct: 108 RKGTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTC 167
Query: 87 KAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 134
KAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH
Sbjct: 168 KAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 215
>gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens]
Length = 158
Score = 196 bits (499), Expect = 4e-51
Identities = 94/106 (88%), Positives = 97/106 (91%)
Query: 29 GTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTCKA 88
G PPD RGQS +RHGIPMSHVARQITKE+FA FDYI CMD+SNLRDLNRKSNQVKTCKA
Sbjct: 53 GNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKA 112
Query: 89 KIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 134
KIELLGSYDPQKQLIIEDPYYGNDSDFE VYQ CVRC RAFLEKAH
Sbjct: 113 KIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
>gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens]
Length = 158
Score = 177 bits (448), Expect = 3e-45
Identities = 86/106 (81%), Positives = 89/106 (83%)
Query: 29 GTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTCKA 88
G PD R S HGI +H ARQITKE+FA FDYI CMD+SNLRDLNRKSNQVKTCKA
Sbjct: 53 GRSPDPRAVSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKA 112
Query: 89 KIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 134
KIELLGSYDPQKQLIIEDPYYGNDSDFE VYQ CVRC RAFLEKAH
Sbjct: 113 KIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
>gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens]
Length = 112
Score = 47.0 bits (110), Expect = 5e-06
Identities = 20/26 (76%), Positives = 22/26 (84%)
Query: 29 GTPPDSRGQSFTERHGIPMSHVARQI 54
G PPD RGQS +RHGIPMSHVARQ+
Sbjct: 53 GNPPDYRGQSCMKRHGIPMSHVARQV 78
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 28.9 bits (63), Expect = 1.3
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 68 MDDSNLRDLNRKSNQVKTCKAKIELLGS-YDPQKQL---IIEDPYYGND--SDFEMVYQL 121
+D NLRDL+ S + +++LLG+ Y KQ+ I++P N S E +++
Sbjct: 964 IDLLNLRDLSNGSEEDNLPNTQLDLLGNDYLVSKQVKEYRIQEPNRENSFHSSIEAIWEE 1023
Query: 122 CVRCYRAFLEKAH 134
C +A +K+H
Sbjct: 1024 CKEIVKASSKKSH 1036
>gi|38201690 RAP2B, member of RAS oncogene family [Homo sapiens]
Length = 183
Score = 27.3 bits (59), Expect = 3.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 70 DSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQL 121
D + D RK +V + + +E+L + ++ + D Y N F +VY L
Sbjct: 33 DPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSL 84
>gi|10518344 RAP2A, member of RAS oncogene family [Homo sapiens]
Length = 183
Score = 27.3 bits (59), Expect = 3.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 70 DSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQL 121
D + D RK +V + + +E+L + ++ + D Y N F +VY L
Sbjct: 33 DPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSL 84
>gi|32129209 RAP2C, member of RAS oncogene family [Homo sapiens]
Length = 183
Score = 27.3 bits (59), Expect = 3.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 70 DSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQL 121
D + D RK +V + + +E+L + ++ + D Y N F +VY L
Sbjct: 33 DPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSL 84
>gi|58219792 RAP1B, member of RAS oncogene family [Homo sapiens]
Length = 184
Score = 26.6 bits (57), Expect = 6.4
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 70 DSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQL 121
D + D RK +V + +E+L + ++ + D Y N F +VY +
Sbjct: 33 DPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
>gi|7661678 RAP1B, member of RAS oncogene family [Homo sapiens]
Length = 184
Score = 26.6 bits (57), Expect = 6.4
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 70 DSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQL 121
D + D RK +V + +E+L + ++ + D Y N F +VY +
Sbjct: 33 DPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
>gi|58331202 RAP1A, member of RAS oncogene family [Homo sapiens]
Length = 184
Score = 26.2 bits (56), Expect = 8.4
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 70 DSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQL 121
D + D RK +V + +E+L + ++ + D Y N F +VY +
Sbjct: 33 DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
>gi|4506413 RAP1A, member of RAS oncogene family [Homo sapiens]
Length = 184
Score = 26.2 bits (56), Expect = 8.4
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 70 DSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQL 121
D + D RK +V + +E+L + ++ + D Y N F +VY +
Sbjct: 33 DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSI 84
>gi|18375528 UPF3 regulator of nonsense transcripts homolog B
isoform 1 [Homo sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 8.4
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 4 KQLSADTMMDGAAEAHTSTLRK--------EKPGTPPDSRGQSFTER 42
K+L + + D A + TL K EKP P D G+ + ER
Sbjct: 302 KKLDKENLSDERASGQSCTLPKRSDSELKDEKPKRPEDESGRDYRER 348
>gi|41281583 Histidine acid phosphatase domain containing 1 [Homo
sapiens]
Length = 1222
Score = 26.2 bits (56), Expect = 8.4
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 52 RQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGN 111
R T E++ K P S ++ ++ N VKTC L+ S Q + +EDP
Sbjct: 631 RDFTAEDYEKLT--PSGSISLIKSMHLIKNPVKTCDKVYSLIQSLTSQIRHRMEDP---K 685
Query: 112 DSDFEMVY 119
SD ++ +
Sbjct: 686 SSDIQLYH 693
>gi|106879210 Src homology 2 domain containing adaptor protein B
[Homo sapiens]
Length = 509
Score = 26.2 bits (56), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 91 ELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLC 122
+L+ +Y QK+ EDPY G S + +C
Sbjct: 79 DLIRAYRAQKERDFEDPYNGPGSSLRKLRAMC 110
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 26.2 bits (56), Expect = 8.4
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 4 KQLSADTMMDGAAEAHTSTLRK--------EKPGTPPDSRGQSFTER 42
K+L + + D A + TL K EKP P D G+ + ER
Sbjct: 289 KKLDKENLSDERASGQSCTLPKRSDSELKDEKPKRPEDESGRDYRER 335
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,513,451
Number of Sequences: 37866
Number of extensions: 220540
Number of successful extensions: 692
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 19
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.