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Search of human proteins with 239741258
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741258 PREDICTED: hypothetical protein XP_002342146 [Homo
sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752881 PREDICTED: hypothetical protein [Homo sapiens] 512 e-145
gi|239747434 PREDICTED: hypothetical protein [Homo sapiens] 512 e-145
gi|239741258 PREDICTED: hypothetical protein XP_002342146 [Homo ... 512 e-145
gi|149944548 neurobeachin-like 2 [Homo sapiens] 36 0.028
gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens] 30 2.7
gi|94536840 transmembrane and coiled-coil domains 6 [Homo sapiens] 30 2.7
gi|109638743 hypothetical protein LOC83723 [Homo sapiens] 29 3.5
gi|239753625 PREDICTED: hypothetical protein [Homo sapiens] 28 5.9
gi|239748200 PREDICTED: hypothetical protein XP_002346593 [Homo ... 28 5.9
gi|239742098 PREDICTED: hypothetical protein XP_002342434 [Homo ... 28 5.9
gi|4502179 aquaporin 2 [Homo sapiens] 28 5.9
>gi|239752881 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 512 bits (1318), Expect = e-145
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MMLSQRRRKQHISLLTEGEDYDGDVLGTLALLINEFPGHGFLSLSHPAVVFPAIFLAEVV 60
MMLSQRRRKQHISLLTEGEDYDGDVLGTLALLINEFPGHGFLSLSHPAVVFPAIFLAEVV
Sbjct: 1 MMLSQRRRKQHISLLTEGEDYDGDVLGTLALLINEFPGHGFLSLSHPAVVFPAIFLAEVV 60
Query: 61 DLQHKDTVALFGHLKLSPGFPVSKFAVEDRHSVRTHGGDERAVEGPGDSKVTVGNILSLQ 120
DLQHKDTVALFGHLKLSPGFPVSKFAVEDRHSVRTHGGDERAVEGPGDSKVTVGNILSLQ
Sbjct: 61 DLQHKDTVALFGHLKLSPGFPVSKFAVEDRHSVRTHGGDERAVEGPGDSKVTVGNILSLQ 120
Query: 121 DASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDPLGGLA 180
DASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDPLGGLA
Sbjct: 121 DASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDPLGGLA 180
Query: 181 VEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGLLANFL 240
VEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGLLANFL
Sbjct: 181 VEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGLLANFL 240
Query: 241 PEPGHRQVAVLNGL 254
PEPGHRQVAVLNGL
Sbjct: 241 PEPGHRQVAVLNGL 254
>gi|239747434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 512 bits (1318), Expect = e-145
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MMLSQRRRKQHISLLTEGEDYDGDVLGTLALLINEFPGHGFLSLSHPAVVFPAIFLAEVV 60
MMLSQRRRKQHISLLTEGEDYDGDVLGTLALLINEFPGHGFLSLSHPAVVFPAIFLAEVV
Sbjct: 1 MMLSQRRRKQHISLLTEGEDYDGDVLGTLALLINEFPGHGFLSLSHPAVVFPAIFLAEVV 60
Query: 61 DLQHKDTVALFGHLKLSPGFPVSKFAVEDRHSVRTHGGDERAVEGPGDSKVTVGNILSLQ 120
DLQHKDTVALFGHLKLSPGFPVSKFAVEDRHSVRTHGGDERAVEGPGDSKVTVGNILSLQ
Sbjct: 61 DLQHKDTVALFGHLKLSPGFPVSKFAVEDRHSVRTHGGDERAVEGPGDSKVTVGNILSLQ 120
Query: 121 DASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDPLGGLA 180
DASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDPLGGLA
Sbjct: 121 DASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDPLGGLA 180
Query: 181 VEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGLLANFL 240
VEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGLLANFL
Sbjct: 181 VEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGLLANFL 240
Query: 241 PEPGHRQVAVLNGL 254
PEPGHRQVAVLNGL
Sbjct: 241 PEPGHRQVAVLNGL 254
>gi|239741258 PREDICTED: hypothetical protein XP_002342146 [Homo
sapiens]
Length = 254
Score = 512 bits (1318), Expect = e-145
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MMLSQRRRKQHISLLTEGEDYDGDVLGTLALLINEFPGHGFLSLSHPAVVFPAIFLAEVV 60
MMLSQRRRKQHISLLTEGEDYDGDVLGTLALLINEFPGHGFLSLSHPAVVFPAIFLAEVV
Sbjct: 1 MMLSQRRRKQHISLLTEGEDYDGDVLGTLALLINEFPGHGFLSLSHPAVVFPAIFLAEVV 60
Query: 61 DLQHKDTVALFGHLKLSPGFPVSKFAVEDRHSVRTHGGDERAVEGPGDSKVTVGNILSLQ 120
DLQHKDTVALFGHLKLSPGFPVSKFAVEDRHSVRTHGGDERAVEGPGDSKVTVGNILSLQ
Sbjct: 61 DLQHKDTVALFGHLKLSPGFPVSKFAVEDRHSVRTHGGDERAVEGPGDSKVTVGNILSLQ 120
Query: 121 DASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDPLGGLA 180
DASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDPLGGLA
Sbjct: 121 DASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDPLGGLA 180
Query: 181 VEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGLLANFL 240
VEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGLLANFL
Sbjct: 181 VEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGLLANFL 240
Query: 241 PEPGHRQVAVLNGL 254
PEPGHRQVAVLNGL
Sbjct: 241 PEPGHRQVAVLNGL 254
>gi|149944548 neurobeachin-like 2 [Homo sapiens]
Length = 2754
Score = 36.2 bits (82), Expect = 0.028
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 124 ELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPR--PIRILDPLGGLAV 181
ELH L+ R+ LL P + + L HG G L+GH + +++ +GG+
Sbjct: 837 ELHELSTRL--LLHYSPQACKNNICLDLSPSHGLDGRLTGHRVETWDVKDVVNCVGGMGA 894
Query: 182 EFALVRRLQVEDGEAEGGP--------PQLVQPHLPQ--ALPLG 215
L+ R+ + EAE GP P+L H Q LPLG
Sbjct: 895 LLPLLERVAAQPKEAEAGPAETHDLVGPELTSGHNTQGLVLPLG 938
>gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens]
Length = 211
Score = 29.6 bits (65), Expect = 2.7
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 90 RHSVRTHGGDERAVEGPGDSKVTVGNILSLQDASELHRL-------AHRVQPLLCLQP 140
RH+VR H D R G G VT + S+ D++ R+ R P+ C QP
Sbjct: 36 RHNVRLHSHDVRYGSGSGQQSVT--GVTSVDDSNSYWRIRGKSATVCERGTPIKCGQP 91
>gi|94536840 transmembrane and coiled-coil domains 6 [Homo sapiens]
Length = 493
Score = 29.6 bits (65), Expect = 2.7
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 10/127 (7%)
Query: 116 ILSLQDASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGSLGTLSGHSIPRPIRILDP 175
+L L+ A LH L+H Q + TS+L L LS HS L
Sbjct: 123 LLQLEAARCLHELSHSEQSTVA----EACLPATSYL------LTYLSSHSSDFIELCLYT 172
Query: 176 LGGLAVEFALVRRLQVEDGEAEGGPPQLVQPHLPQALPLGIFAAGVKHEISAQGDDLHGL 235
LG L VE VRR + G + PH+ LG + + A + +
Sbjct: 173 LGNLIVESEAVRRQLLPQGIVPALAACIQSPHVAVLEALGYALSQLLQAEEAPEKIIPSI 232
Query: 236 LANFLPE 242
LA+ LP+
Sbjct: 233 LASTLPQ 239
>gi|109638743 hypothetical protein LOC83723 [Homo sapiens]
Length = 274
Score = 29.3 bits (64), Expect = 3.5
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 90 RHSVRTHGGDERAVEGPGDSKVTVGNILSLQDASELHRLAHRVQPLLC 137
+H V+ HGGD+ A PG + L + LH H L+C
Sbjct: 99 KHQVKGHGGDDGAARAPGSTWAIARGYLHKEFLMVLH---HAAMVLVC 143
>gi|239753625 PREDICTED: hypothetical protein [Homo sapiens]
Length = 483
Score = 28.5 bits (62), Expect = 5.9
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 163 GHSIPRPIRILDPLGGLAVEFALVRRLQVEDGEAEGGPPQLVQPHL 208
GHSIP+P GG V L +G+AE P Q + HL
Sbjct: 40 GHSIPQPQH-----GGRGVPTHLTGCTDQREGQAEDSPQQTLTKHL 80
>gi|239748200 PREDICTED: hypothetical protein XP_002346593 [Homo
sapiens]
Length = 483
Score = 28.5 bits (62), Expect = 5.9
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 163 GHSIPRPIRILDPLGGLAVEFALVRRLQVEDGEAEGGPPQLVQPHL 208
GHSIP+P GG V L +G+AE P Q + HL
Sbjct: 40 GHSIPQPQH-----GGRGVPTHLTGCTDQREGQAEDSPQQTLTKHL 80
>gi|239742098 PREDICTED: hypothetical protein XP_002342434 [Homo
sapiens]
Length = 483
Score = 28.5 bits (62), Expect = 5.9
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 163 GHSIPRPIRILDPLGGLAVEFALVRRLQVEDGEAEGGPPQLVQPHL 208
GHSIP+P GG V L +G+AE P Q + HL
Sbjct: 40 GHSIPQPQH-----GGRGVPTHLTGCTDQREGQAEDSPQQTLTKHL 80
>gi|4502179 aquaporin 2 [Homo sapiens]
Length = 271
Score = 28.5 bits (62), Expect = 5.9
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 99 DERAVEGPGDSKVTVGNILSLQDASELHRLAHRVQPLLCLQPNSEFFGLTSWLDVDHGS- 157
DER E PG +++G ++L +H + P L P +T D DH
Sbjct: 150 DERRGENPGTPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAV----VTGKFD-DHWVF 204
Query: 158 -LGTLSG---HSIPRPIRILDPLGGLAVEFALVRRLQVEDG--EAEGGPPQLVQPHLPQA 211
+G L G S+ + P L+ A+++ L+ + E E Q V+ H PQ+
Sbjct: 205 WIGPLVGAILGSLLYNYVLFPPAKSLSERLAVLKGLEPDTDWEEREVRRRQSVELHSPQS 264
Query: 212 LPLG 215
LP G
Sbjct: 265 LPRG 268
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.141 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,018,853
Number of Sequences: 37866
Number of extensions: 531271
Number of successful extensions: 1003
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 11
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.