Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239508804
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508804 PREDICTED: hypothetical protein [Homo sapiens]
(102 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754554 PREDICTED: hypothetical protein [Homo sapiens] 202 5e-53
gi|239749115 PREDICTED: hypothetical protein [Homo sapiens] 202 5e-53
gi|239743146 PREDICTED: hypothetical protein XP_002342760 [Homo ... 202 5e-53
gi|239508804 PREDICTED: hypothetical protein [Homo sapiens] 202 5e-53
gi|114326552 MON2 homolog [Homo sapiens] 29 0.70
gi|224809331 FK506 binding protein 5 isoform 2 [Homo sapiens] 27 3.5
gi|169636428 calicin [Homo sapiens] 27 4.5
gi|169183778 PREDICTED: Transmembrane protein ENSP00000340100 [H... 26 5.9
gi|169179724 PREDICTED: Transmembrane protein ENSP00000340100 [H... 26 5.9
gi|169180128 PREDICTED: Transmembrane protein ENSP00000340100 [H... 26 5.9
gi|33946327 nucleoporin 214kDa [Homo sapiens] 26 7.7
gi|40354197 THAP domain containing 11 [Homo sapiens] 26 7.7
>gi|239754554 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 202 bits (514), Expect = 5e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS 60
MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS
Sbjct: 1 MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS 60
Query: 61 VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV 102
VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV
Sbjct: 61 VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV 102
>gi|239749115 PREDICTED: hypothetical protein [Homo sapiens]
Length = 337
Score = 202 bits (514), Expect = 5e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS 60
MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS
Sbjct: 236 MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS 295
Query: 61 VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV 102
VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV
Sbjct: 296 VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV 337
>gi|239743146 PREDICTED: hypothetical protein XP_002342760 [Homo
sapiens]
Length = 102
Score = 202 bits (514), Expect = 5e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS 60
MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS
Sbjct: 1 MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS 60
Query: 61 VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV 102
VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV
Sbjct: 61 VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV 102
>gi|239508804 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 202 bits (514), Expect = 5e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS 60
MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS
Sbjct: 1 MVRSKQARKVISKQEAQRKCLLDLKPGCWLPEEGKKRSSFAIANHRAADRCITEAGSVSS 60
Query: 61 VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV 102
VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV
Sbjct: 61 VSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKGV 102
>gi|114326552 MON2 homolog [Homo sapiens]
Length = 1717
Score = 29.3 bits (64), Expect = 0.70
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 56 GSVSSVSSGGLISLSGGTTQFSVQRKKNEWTMLLLLSAQNA 96
GSVS+ ++ G++ + GG T + W +L ++ Q +
Sbjct: 422 GSVSAPANSGMVGIGGGVTLLPAFEYRGTWIPILTITVQGS 462
>gi|224809331 FK506 binding protein 5 isoform 2 [Homo sapiens]
Length = 268
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 9 KVISKQEAQRKCLLDL-----KPGCWLPEEGKKRSSFAIANHRAADRCIT 53
K + K + + +C+L L PG W+P++ R + RC++
Sbjct: 204 KALEKMQREEQCILYLGPRPKNPGRWIPKKNWSRLPLSKRREPYTSRCVS 253
>gi|169636428 calicin [Homo sapiens]
Length = 588
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 45 HRAADRCITEAGSVSSVSSGGLISLSGGTTQFSVQRKKNEWTML 88
+RAA T AG +S G +SG T + N WT L
Sbjct: 315 YRAAALSATSAGRYIYISGGTTEQISGLKTAWRYDMDDNSWTKL 358
>gi|169183778 PREDICTED: Transmembrane protein ENSP00000340100
[Homo sapiens]
Length = 208
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 3 RSKQARKVISKQEAQR--KCLLDLKPGCWLPEEGKKR 37
R+ +AR+ S++EA++ K L +K WLP+EG R
Sbjct: 60 RTSRARRT-SQEEAEKLWKLLFLMKSQGWLPQEGSVR 95
>gi|169179724 PREDICTED: Transmembrane protein ENSP00000340100
[Homo sapiens]
Length = 208
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 3 RSKQARKVISKQEAQR--KCLLDLKPGCWLPEEGKKR 37
R+ +AR+ S++EA++ K L +K WLP+EG R
Sbjct: 60 RTSRARRT-SQEEAEKLWKLLFLMKSQGWLPQEGSVR 95
>gi|169180128 PREDICTED: Transmembrane protein ENSP00000340100
[Homo sapiens]
Length = 208
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 3 RSKQARKVISKQEAQR--KCLLDLKPGCWLPEEGKKR 37
R+ +AR+ S++EA++ K L +K WLP+EG R
Sbjct: 60 RTSRARRT-SQEEAEKLWKLLFLMKSQGWLPQEGSVR 95
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 52 ITEAGSVSSVSSGGLISLSGGTTQFSVQRKKNEWTM 87
+T AGS +S GG SLS G T FS ++ T+
Sbjct: 1416 VTSAGSSGVISFGGT-SLSAGKTSFSFGSQQTNSTV 1450
>gi|40354197 THAP domain containing 11 [Homo sapiens]
Length = 314
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 68 SLSGGTTQFSVQRKKNEWTMLLLLSAQNARGVKG 101
SLS GTT+ + RK NE +L L + +KG
Sbjct: 247 SLSSGTTEEELLRKLNEQRDILALMEVKMKEMKG 280
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.127 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,453,508
Number of Sequences: 37866
Number of extensions: 118978
Number of successful extensions: 311
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 12
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.