Search of human proteins with 23943904

Search of human proteins with 23943904

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23943904 cell death-inducing DFFA-like effector c [Homo
sapiens]
         (238 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens]   478   e-135
gi|38158011 cell death-inducing DFFA-like effector a isoform 2 [...   181   5e-46
gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [H...   181   5e-46
gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]   158   4e-39
gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide i...    50   1e-06
gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide is...    50   1e-06
gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Ho...    37   0.015

>gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens]
          Length = 238

 Score =  478 bits (1231), Expect = e-135
 Identities = 238/238 (100%), Positives = 238/238 (100%)

Query: 1   MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA 60
           MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA
Sbjct: 1   MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA 60

Query: 61  YSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPS 120
           YSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPS
Sbjct: 61  YSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPS 120

Query: 121 EQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGA 180
           EQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGA
Sbjct: 121 EQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGA 180

Query: 181 KRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ 238
           KRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ
Sbjct: 181 KRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ 238


>gi|38158011 cell death-inducing DFFA-like effector a isoform 2
           [Homo sapiens]
          Length = 253

 Score =  181 bits (459), Expect = 5e-46
 Identities = 93/183 (50%), Positives = 125/183 (68%), Gaps = 6/183 (3%)

Query: 36  SPKAPRARPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETE 95
           +P    ARP RVS  DRS R+G+MA SL++L+ K  D L++A     LVLEEDGT V+TE
Sbjct: 62  TPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTE 121

Query: 96  EYFQALAGDTVFMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDF 155
           E+FQ L  +T FM+L+KGQKW P    G++H  + S  P K+  +ARVTFDLY+LNP+DF
Sbjct: 122 EFFQTLGDNTHFMILEKGQKWMP----GSQHVPTCS--PPKRSGIARVTFDLYRLNPKDF 175

Query: 156 IGCLNVKATFYDTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDA 215
           IGCLNVKAT Y+ YS+SYD+ C G K +++   R+  +S Q TG  L+    Y+ ++LD 
Sbjct: 176 IGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLGTYMLRVLDD 235

Query: 216 TEE 218
            EE
Sbjct: 236 KEE 238


>gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [Homo
           sapiens]
          Length = 219

 Score =  181 bits (459), Expect = 5e-46
 Identities = 93/183 (50%), Positives = 125/183 (68%), Gaps = 6/183 (3%)

Query: 36  SPKAPRARPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETE 95
           +P    ARP RVS  DRS R+G+MA SL++L+ K  D L++A     LVLEEDGT V+TE
Sbjct: 28  TPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTE 87

Query: 96  EYFQALAGDTVFMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDF 155
           E+FQ L  +T FM+L+KGQKW P    G++H  + S  P K+  +ARVTFDLY+LNP+DF
Sbjct: 88  EFFQTLGDNTHFMILEKGQKWMP----GSQHVPTCS--PPKRSGIARVTFDLYRLNPKDF 141

Query: 156 IGCLNVKATFYDTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDA 215
           IGCLNVKAT Y+ YS+SYD+ C G K +++   R+  +S Q TG  L+    Y+ ++LD 
Sbjct: 142 IGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLGTYMLRVLDD 201

Query: 216 TEE 218
            EE
Sbjct: 202 KEE 204


>gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]
          Length = 219

 Score =  158 bits (399), Expect = 4e-39
 Identities = 95/225 (42%), Positives = 131/225 (58%), Gaps = 8/225 (3%)

Query: 5   MKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIMAYSL 63
           M+ LS L P  L R VS  +S   +++  S P P+    RP RV    R++RKG+ A + 
Sbjct: 1   MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQ----RPFRVCDHKRTIRKGLTAATR 56

Query: 64  EDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPSEQG 123
           ++LL K  +TL+L +    LVLEEDGT V++E++FQ L  DT  MVLQ GQ W P     
Sbjct: 57  QELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGV 115

Query: 124 TRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGAKRI 183
             + L    +P    D+AR TFD+YK NP+D  G LNVKATFY  YS+S D    G K++
Sbjct: 116 LSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKV 174

Query: 184 MKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASS 228
           ++E  RW    +Q  GH+LLG S  L+  ++  E+ Q  KG+  S
Sbjct: 175 LRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQ-QKGRLHS 218


>gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide
           isoform 2 [Homo sapiens]
          Length = 268

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 43  RPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADK---PFFLVLEEDGTTVETEEYFQ 99
           +PC +       + G+ A  LEDL  K  D L + DK   P  LVL EDGT V+ ++YF 
Sbjct: 19  KPCLLRRNYSREQHGVAASCLEDLRSKACDILAI-DKSLTPVTLVLAEDGTIVDDDDYFL 77

Query: 100 ALAGDTVFMVLQKGQKWQPPSEQG 123
            L  +T F+ L   +KW   +  G
Sbjct: 78  CLPSNTKFVALASNEKWAYNNSDG 101


>gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide
           isoform 1 [Homo sapiens]
          Length = 331

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 43  RPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADK---PFFLVLEEDGTTVETEEYFQ 99
           +PC +       + G+ A  LEDL  K  D L + DK   P  LVL EDGT V+ ++YF 
Sbjct: 19  KPCLLRRNYSREQHGVAASCLEDLRSKACDILAI-DKSLTPVTLVLAEDGTIVDDDDYFL 77

Query: 100 ALAGDTVFMVLQKGQKWQPPSEQG 123
            L  +T F+ L   +KW   +  G
Sbjct: 78  CLPSNTKFVALASNEKWAYNNSDG 101


>gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Homo
           sapiens]
          Length = 338

 Score = 37.0 bits (84), Expect = 0.015
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 52  RSVRK-GIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVL 110
           RS RK G+   S +++L K      L ++   L L EDGT + TE+YF ++  +   ++L
Sbjct: 14  RSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLL 72

Query: 111 QKGQKWQPPSEQGTRHPLSLSHKP 134
             GQ WQ       R  LS  H+P
Sbjct: 73  TLGQAWQ-GYVSDIRRFLSAFHEP 95


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,943,594
Number of Sequences: 37866
Number of extensions: 357373
Number of successful extensions: 922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 7
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.