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Search of human proteins with 237757356
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237757356 protor-2 isoform c [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237757356 protor-2 isoform c [Homo sapiens] 402 e-113
gi|237757349 protor-2 isoform a [Homo sapiens] 380 e-106
gi|237757351 protor-2 isoform a [Homo sapiens] 380 e-106
gi|31317218 proline rich 5 (renal) isoform 1 [Homo sapiens] 177 6e-45
gi|66346654 proline rich 5 (renal) isoform 2 [Homo sapiens] 173 8e-44
gi|31317214 proline rich 5 (renal) isoform 2 [Homo sapiens] 173 8e-44
gi|237757353 protor-2 isoform b [Homo sapiens] 136 1e-32
gi|66346658 proline rich 5 (renal) isoform 3 [Homo sapiens] 99 3e-21
gi|66346656 proline rich 5 (renal) isoform 3 [Homo sapiens] 99 3e-21
gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens] 87 1e-17
gi|34304360 nephrocystin 3 [Homo sapiens] 28 7.1
gi|61743980 stabilin 2 precursor [Homo sapiens] 28 7.1
gi|34147676 MTERF domain containing 1 [Homo sapiens] 27 9.3
gi|157426879 nuclear protein localization 4 [Homo sapiens] 27 9.3
>gi|237757356 protor-2 isoform c [Homo sapiens]
Length = 205
Score = 402 bits (1034), Expect = e-113
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MTRGFAPILPVEFHKMGSFRRPRPRFMSSPVLSDLPRFQAARQALQLSSSSAWNSVQTAV 60
MTRGFAPILPVEFHKMGSFRRPRPRFMSSPVLSDLPRFQAARQALQLSSSSAWNSVQTAV
Sbjct: 1 MTRGFAPILPVEFHKMGSFRRPRPRFMSSPVLSDLPRFQAARQALQLSSSSAWNSVQTAV 60
Query: 61 INVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGEN 120
INVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGEN
Sbjct: 61 INVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGEN 120
Query: 121 RIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQ 180
RIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQ
Sbjct: 121 RIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQ 180
Query: 181 SKLPSSIVQMLLILQPGGTPGSGPR 205
SKLPSSIVQMLLILQPGGTPGSGPR
Sbjct: 181 SKLPSSIVQMLLILQPGGTPGSGPR 205
>gi|237757349 protor-2 isoform a [Homo sapiens]
Length = 368
Score = 380 bits (977), Expect = e-106
Identities = 198/204 (97%), Positives = 199/204 (97%), Gaps = 1/204 (0%)
Query: 1 MTRGFAPILPVEFHKMGSFRRPRPRFMSSPVLSDLPRFQAARQALQLSSSSAWNSVQTAV 60
MTRGFAPILPVEFHKMGSFRRPRPRFMSSPVLSDLPRFQAARQALQLSSSSAWNSVQTAV
Sbjct: 1 MTRGFAPILPVEFHKMGSFRRPRPRFMSSPVLSDLPRFQAARQALQLSSSSAWNSVQTAV 60
Query: 61 INVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGEN 120
INVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGEN
Sbjct: 61 INVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGEN 120
Query: 121 RIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQ 180
RIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQ
Sbjct: 121 RIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQ 180
Query: 181 SKLPSSIVQMLLILQPGGTPGSGP 204
SKLPSSIVQMLLILQ P +GP
Sbjct: 181 SKLPSSIVQMLLILQSVHEP-TGP 203
>gi|237757351 protor-2 isoform a [Homo sapiens]
Length = 368
Score = 380 bits (977), Expect = e-106
Identities = 198/204 (97%), Positives = 199/204 (97%), Gaps = 1/204 (0%)
Query: 1 MTRGFAPILPVEFHKMGSFRRPRPRFMSSPVLSDLPRFQAARQALQLSSSSAWNSVQTAV 60
MTRGFAPILPVEFHKMGSFRRPRPRFMSSPVLSDLPRFQAARQALQLSSSSAWNSVQTAV
Sbjct: 1 MTRGFAPILPVEFHKMGSFRRPRPRFMSSPVLSDLPRFQAARQALQLSSSSAWNSVQTAV 60
Query: 61 INVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGEN 120
INVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGEN
Sbjct: 61 INVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGEN 120
Query: 121 RIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQ 180
RIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQ
Sbjct: 121 RIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQ 180
Query: 181 SKLPSSIVQMLLILQPGGTPGSGP 204
SKLPSSIVQMLLILQ P +GP
Sbjct: 181 SKLPSSIVQMLLILQSVHEP-TGP 203
>gi|31317218 proline rich 5 (renal) isoform 1 [Homo sapiens]
Length = 388
Score = 177 bits (449), Expect = 6e-45
Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 7/180 (3%)
Query: 23 RPRFMSSPVLSDLPRFQAAR-------QALQLSSSSAWNSVQTAVINVFKGGGLQSNELY 75
R +FMSSP LSDL + + A Q + +++ WNS+ VI VF+ GL EL+
Sbjct: 6 RLKFMSSPSLSDLGKREPAAAADERGTQQRRACANATWNSIHNGVIAVFQRKGLPDQELF 65
Query: 76 ALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGENRIEVLAEVWDHFFTE 135
+LNE +R+LLK+ELGSF T+Y QNQLL KG+ + +KI+ EG+ ++ LAE WD FF++
Sbjct: 66 SLNEGVRQLLKTELGSFFTEYLQNQLLTKGMVILRDKIRFYEGQKLLDSLAETWDFFFSD 125
Query: 136 TLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQSKLPSSIVQMLLILQ 195
LP LQAIFYPVQG+E ++RQ++LL FR+ + L VKL D L A +++P +IVQMLL+LQ
Sbjct: 126 VLPMLQAIFYPVQGKEPSVRQLALLHFRNAITLSVKLEDALARAHARVPPAIVQMLLVLQ 185
>gi|66346654 proline rich 5 (renal) isoform 2 [Homo sapiens]
Length = 379
Score = 173 bits (439), Expect = 8e-44
Identities = 88/176 (50%), Positives = 123/176 (69%), Gaps = 7/176 (3%)
Query: 27 MSSPVLSDLPRFQAAR-------QALQLSSSSAWNSVQTAVINVFKGGGLQSNELYALNE 79
MSSP LSDL + + A Q + +++ WNS+ VI VF+ GL EL++LNE
Sbjct: 1 MSSPSLSDLGKREPAAAADERGTQQRRACANATWNSIHNGVIAVFQRKGLPDQELFSLNE 60
Query: 80 NIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGENRIEVLAEVWDHFFTETLPT 139
+R+LLK+ELGSF T+Y QNQLL KG+ + +KI+ EG+ ++ LAE WD FF++ LP
Sbjct: 61 GVRQLLKTELGSFFTEYLQNQLLTKGMVILRDKIRFYEGQKLLDSLAETWDFFFSDVLPM 120
Query: 140 LQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQSKLPSSIVQMLLILQ 195
LQAIFYPVQG+E ++RQ++LL FR+ + L VKL D L A +++P +IVQMLL+LQ
Sbjct: 121 LQAIFYPVQGKEPSVRQLALLHFRNAITLSVKLEDALARAHARVPPAIVQMLLVLQ 176
>gi|31317214 proline rich 5 (renal) isoform 2 [Homo sapiens]
Length = 379
Score = 173 bits (439), Expect = 8e-44
Identities = 88/176 (50%), Positives = 123/176 (69%), Gaps = 7/176 (3%)
Query: 27 MSSPVLSDLPRFQAAR-------QALQLSSSSAWNSVQTAVINVFKGGGLQSNELYALNE 79
MSSP LSDL + + A Q + +++ WNS+ VI VF+ GL EL++LNE
Sbjct: 1 MSSPSLSDLGKREPAAAADERGTQQRRACANATWNSIHNGVIAVFQRKGLPDQELFSLNE 60
Query: 80 NIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGENRIEVLAEVWDHFFTETLPT 139
+R+LLK+ELGSF T+Y QNQLL KG+ + +KI+ EG+ ++ LAE WD FF++ LP
Sbjct: 61 GVRQLLKTELGSFFTEYLQNQLLTKGMVILRDKIRFYEGQKLLDSLAETWDFFFSDVLPM 120
Query: 140 LQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQSKLPSSIVQMLLILQ 195
LQAIFYPVQG+E ++RQ++LL FR+ + L VKL D L A +++P +IVQMLL+LQ
Sbjct: 121 LQAIFYPVQGKEPSVRQLALLHFRNAITLSVKLEDALARAHARVPPAIVQMLLVLQ 176
>gi|237757353 protor-2 isoform b [Homo sapiens]
Length = 240
Score = 136 bits (343), Expect = 1e-32
Identities = 72/85 (84%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 83 RLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGENRIEVLAEVWDHFFTETLPTLQA 142
RLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGENRIEVLAEVWDHFFTETLPTLQA
Sbjct: 2 RLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGENRIEVLAEVWDHFFTETLPTLQA 61
Query: 143 IFYPVQG-QELTIRQISLLGFRDLV 166
IFYPVQ E T S L +LV
Sbjct: 62 IFYPVQSVHEPTGPSESYLQLEELV 86
>gi|66346658 proline rich 5 (renal) isoform 3 [Homo sapiens]
Length = 293
Score = 99.0 bits (245), Expect = 3e-21
Identities = 46/90 (51%), Positives = 67/90 (74%)
Query: 106 LFFVEEKIKLCEGENRIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDL 165
+ + +KI+ EG+ ++ LAE WD FF++ LP LQAIFYPVQG+E ++RQ++LL FR+
Sbjct: 1 MVILRDKIRFYEGQKLLDSLAETWDFFFSDVLPMLQAIFYPVQGKEPSVRQLALLHFRNA 60
Query: 166 VLLKVKLGDLLLLAQSKLPSSIVQMLLILQ 195
+ L VKL D L A +++P +IVQMLL+LQ
Sbjct: 61 ITLSVKLEDALARAHARVPPAIVQMLLVLQ 90
>gi|66346656 proline rich 5 (renal) isoform 3 [Homo sapiens]
Length = 293
Score = 99.0 bits (245), Expect = 3e-21
Identities = 46/90 (51%), Positives = 67/90 (74%)
Query: 106 LFFVEEKIKLCEGENRIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDL 165
+ + +KI+ EG+ ++ LAE WD FF++ LP LQAIFYPVQG+E ++RQ++LL FR+
Sbjct: 1 MVILRDKIRFYEGQKLLDSLAETWDFFFSDVLPMLQAIFYPVQGKEPSVRQLALLHFRNA 60
Query: 166 VLLKVKLGDLLLLAQSKLPSSIVQMLLILQ 195
+ L VKL D L A +++P +IVQMLL+LQ
Sbjct: 61 ITLSVKLEDALARAHARVPPAIVQMLLVLQ 90
>gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens]
Length = 555
Score = 86.7 bits (213), Expect = 1e-17
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 7/107 (6%)
Query: 27 MSSPVLSDLPRFQAAR-------QALQLSSSSAWNSVQTAVINVFKGGGLQSNELYALNE 79
MSSP LSDL + + A Q + +++ WNS+ VI VF+ GL EL++LNE
Sbjct: 1 MSSPSLSDLGKREPAAAADERGTQQRRACANATWNSIHNGVIAVFQRKGLPDQELFSLNE 60
Query: 80 NIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGENRIEVLA 126
+R+LLK+ELGSF T+Y QNQLL KG+ + +KI+ E R + A
Sbjct: 61 GVRQLLKTELGSFFTEYLQNQLLTKGMVILRDKIRFYEELQRDKAAA 107
>gi|34304360 nephrocystin 3 [Homo sapiens]
Length = 1330
Score = 27.7 bits (60), Expect = 7.1
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 60 VINVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFFVEEKIKLCEGE 119
++N+F L +A + + + + + T+YF + +++ K CEGE
Sbjct: 886 LLNLFVSQNLYKRGHFAELLSYWQFVGKDKSAMATEYFDS---------LKQYEKNCEGE 936
Query: 120 NRIEVLAEVWDHF--FTETLPTLQAIFYPVQGQELTIRQISL 159
+ + LA++++ F + L L P+Q + L IR+ +L
Sbjct: 937 DNMSCLADLYETLGRFLKDLGLLSQAIVPLQ-RSLEIRETAL 977
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 27.7 bits (60), Expect = 7.1
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 44 ALQLSSSSAWNSVQTAVINVFKGGGLQSNELYALNENIRRLLKSEL 89
A+ L +S+AW ++Q + ++V G G +L+ LN R+++ EL
Sbjct: 1823 AVDLPTSTAWKTLQGSELSVKCGAGRDIGDLF-LNGQTCRIVQREL 1867
>gi|34147676 MTERF domain containing 1 [Homo sapiens]
Length = 417
Score = 27.3 bits (59), Expect = 9.3
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 13/150 (8%)
Query: 49 SSSAWNSVQTAVINVFKGGGLQSNELYALNENIRRLLKSELGSFITDYFQNQLLAKGLFF 108
+SS WNS Q+ + + QS+ L ++NE ++ + SF ++ F +L
Sbjct: 63 TSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQK--TQNISSFDSELFLEELDELPPLS 120
Query: 109 VEEKIKLCEGENRIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLL 168
+ I E I+++A+ LP T++++ LLG DL +
Sbjct: 121 PMQPI---SEEEAIQIIAD-------PPLPPASFTLRDYVDHSETLQKLVLLGV-DLSKI 169
Query: 169 KVKLGDLLLLAQSKLPSSIVQMLLILQPGG 198
+ LL + I QMLL L+ G
Sbjct: 170 EKHPEAANLLLRLDFEKDIKQMLLFLKDVG 199
>gi|157426879 nuclear protein localization 4 [Homo sapiens]
Length = 608
Score = 27.3 bits (59), Expect = 9.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 156 QISLLGFRDLVLLKVKLGDLLLLAQSKLPSSIVQMLLILQPG 197
+I+ + L LLK+K GDLL L S L +M + PG
Sbjct: 55 EITASSNKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPG 96
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,457,685
Number of Sequences: 37866
Number of extensions: 289173
Number of successful extensions: 654
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 14
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.