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Search of human proteins with 116008458
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens]
(461 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens] 938 0.0
gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens] 911 0.0
gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens] 822 0.0
gi|15451929 CDC14 homolog A isoform 1 [Homo sapiens] 555 e-158
gi|15451931 CDC14 homolog A isoform 2 [Homo sapiens] 555 e-158
gi|15451933 CDC14 homolog A isoform 3 [Homo sapiens] 520 e-147
gi|30089952 protein tyrosine phosphatase domain containing 1 pro... 69 1e-11
gi|30089950 protein tyrosine phosphatase domain containing 1 pro... 69 1e-11
gi|56786144 dual specificity phosphatase 23 [Homo sapiens] 63 5e-10
gi|14589856 protein tyrosine phosphatase type IVA, member 3 isof... 59 9e-09
gi|4506283 protein tyrosine phosphatase type IVA, member 1 [Homo... 55 1e-07
gi|14589854 protein tyrosine phosphatase type IVA, member 3 isof... 50 3e-06
gi|18104971 protein tyrosine phosphatase type IVA, member 2 isof... 50 3e-06
gi|21536333 dual specificity phosphatase 10 isoform b [Homo sapi... 50 6e-06
gi|21536331 dual specificity phosphatase 10 isoform b [Homo sapi... 50 6e-06
gi|6005812 dual specificity phosphatase 10 isoform a [Homo sapiens] 50 6e-06
gi|169162376 PREDICTED: similar to protein tyrosine phosphatase ... 46 6e-05
gi|4758204 dual specificity phosphatase 1 [Homo sapiens] 46 8e-05
gi|51093845 dual specificity phosphatase 18 [Homo sapiens] 45 2e-04
gi|38372911 dual specificity phosphatase 16 [Homo sapiens] 44 4e-04
gi|4503417 dual specificity phosphatase 4 isoform 1 [Homo sapiens] 44 4e-04
gi|16950652 dual specificity phosphatase 4 isoform 2 [Homo sapiens] 44 4e-04
gi|5902002 dual specificity phosphatase 14 [Homo sapiens] 43 7e-04
gi|73765544 phosphatase and tensin homolog [Homo sapiens] 42 9e-04
gi|4758206 dual specificity phosphatase 2 [Homo sapiens] 42 9e-04
gi|62865890 dual specificity phosphatase 5 [Homo sapiens] 41 0.002
gi|213972593 TPTE and PTEN homologous inositol lipid phosphatase... 41 0.002
gi|213972591 TPTE and PTEN homologous inositol lipid phosphatase... 41 0.002
gi|213972589 TPTE and PTEN homologous inositol lipid phosphatase... 41 0.002
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 41 0.003
>gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens]
Length = 461
Score = 938 bits (2425), Expect = 0.0
Identities = 461/461 (100%), Positives = 461/461 (100%)
Query: 1 MSREGAGAALVAEVIKDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMV 60
MSREGAGAALVAEVIKDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMV
Sbjct: 1 MSREGAGAALVAEVIKDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMV 60
Query: 61 YRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIF 120
YRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIF
Sbjct: 61 YRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIF 120
Query: 121 GETSYIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLN 180
GETSYIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLN
Sbjct: 121 GETSYIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLN 180
Query: 181 WIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAG 240
WIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAG
Sbjct: 181 WIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAG 240
Query: 241 FDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTA 300
FDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTA
Sbjct: 241 FDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTA 300
Query: 301 AETIAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSGV 360
AETIAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSGV
Sbjct: 301 AETIAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSGV 360
Query: 361 DDISINGVENQDQQEPEPYSDDDEINGVTQGDRLRALKSRRQSKTNAIPLTVILQSSVQS 420
DDISINGVENQDQQEPEPYSDDDEINGVTQGDRLRALKSRRQSKTNAIPLTVILQSSVQS
Sbjct: 361 DDISINGVENQDQQEPEPYSDDDEINGVTQGDRLRALKSRRQSKTNAIPLTVILQSSVQS 420
Query: 421 CKTSEPNISGSAGITKRTTRSASRKSSVKSLSISRTKTVLR 461
CKTSEPNISGSAGITKRTTRSASRKSSVKSLSISRTKTVLR
Sbjct: 421 CKTSEPNISGSAGITKRTTRSASRKSSVKSLSISRTKTVLR 461
>gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens]
Length = 498
Score = 911 bits (2355), Expect = 0.0
Identities = 446/447 (99%), Positives = 446/447 (99%)
Query: 15 IKDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSI 74
I DRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSI
Sbjct: 52 ITDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSI 111
Query: 75 TMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGETSYIPFRDAAYG 134
TMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGETSYIPFRDAAYG
Sbjct: 112 TMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGETSYIPFRDAAYG 171
Query: 135 SCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPH 194
SCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPH
Sbjct: 172 SCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPH 231
Query: 195 SRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTP 254
SRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTP
Sbjct: 232 SRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTP 291
Query: 255 TDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGS 314
TDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGS
Sbjct: 292 TDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGS 351
Query: 315 VIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSGVDDISINGVENQDQQ 374
VIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSGVDDISINGVENQDQQ
Sbjct: 352 VIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSGVDDISINGVENQDQQ 411
Query: 375 EPEPYSDDDEINGVTQGDRLRALKSRRQSKTNAIPLTVILQSSVQSCKTSEPNISGSAGI 434
EPEPYSDDDEINGVTQGDRLRALKSRRQSKTNAIPLTVILQSSVQSCKTSEPNISGSAGI
Sbjct: 412 EPEPYSDDDEINGVTQGDRLRALKSRRQSKTNAIPLTVILQSSVQSCKTSEPNISGSAGI 471
Query: 435 TKRTTRSASRKSSVKSLSISRTKTVLR 461
TKRTTRSASRKSSVKSLSISRTKTVLR
Sbjct: 472 TKRTTRSASRKSSVKSLSISRTKTVLR 498
>gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens]
Length = 459
Score = 822 bits (2123), Expect = 0.0
Identities = 396/398 (99%), Positives = 397/398 (99%)
Query: 15 IKDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSI 74
I DRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSI
Sbjct: 52 ITDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSI 111
Query: 75 TMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGETSYIPFRDAAYG 134
TMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGETSYIPFRDAAYG
Sbjct: 112 TMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGETSYIPFRDAAYG 171
Query: 135 SCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPH 194
SCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPH
Sbjct: 172 SCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPH 231
Query: 195 SRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTP 254
SRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTP
Sbjct: 232 SRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTP 291
Query: 255 TDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGS 314
TDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGS
Sbjct: 292 TDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGS 351
Query: 315 VIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSGVDDISINGVENQDQQ 374
VIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSGVDDISINGVENQDQQ
Sbjct: 352 VIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSGVDDISINGVENQDQQ 411
Query: 375 EPEPYSDDDEINGVTQGDRLRALKSRRQSKTNAIPLTV 412
EPEPYSDDDEINGVTQGDRLRALKSRRQSKTNAIPLT+
Sbjct: 412 EPEPYSDDDEINGVTQGDRLRALKSRRQSKTNAIPLTL 449
>gi|15451929 CDC14 homolog A isoform 1 [Homo sapiens]
Length = 594
Score = 555 bits (1430), Expect = e-158
Identities = 271/480 (56%), Positives = 349/480 (72%), Gaps = 28/480 (5%)
Query: 1 MSREGAGAALVAEVIKDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMV 60
M+ E E +KDRL FA L +RPKS N HYFSID EL YENFYADFGPLNLAMV
Sbjct: 1 MAAESGELIGACEFMKDRLYFATLRNRPKSTVNTHYFSIDEELVYENFYADFGPLNLAMV 60
Query: 61 YRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIF 120
YRYCCK+NKKLKS ++ RKKIVH+T DQRK+ANAAFL+G Y VIYL +TPEEAYR L+
Sbjct: 61 YRYCCKLNKKLKSYSLSRKKIVHYTCFDQRKRANAAFLIGAYAVIYLKKTPEEAYRALLS 120
Query: 121 GETS-YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDL 179
G Y+PFRDA++G+C + +T+LDC ++K +Q+GF +F +F++DEYEHYE+ ENGD
Sbjct: 121 GSNPPYLPFRDASFGNCTYNLTILDCLQGIRKGLQHGFFDFETFDVDEYEHYERVENGDF 180
Query: 180 NWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDA 239
NWI+P +F+AF GPH ++++E+GY H+PE Y YFK HNVT ++RLNK++Y+AKRFTDA
Sbjct: 181 NWIVPGKFLAFSGPHPKSKIENGYPLHAPEAYFPYFKKHNVTAVVRLNKKIYEAKRFTDA 240
Query: 240 GFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMT 299
GF+H+DLFF DGSTP+D IV+ FL+ICEN EGAIAVHCKAGLGRTGTLIACY+MKHYR T
Sbjct: 241 GFEHYDLFFIDGSTPSDNIVRRFLNICENTEGAIAVHCKAGLGRTGTLIACYVMKHYRFT 300
Query: 300 AAETIAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSG 359
AE IAW+RICRPGS+IGPQQ FL KQ +LW++GD FR KLK + + + + +K+LSG
Sbjct: 301 HAEIIAWIRICRPGSIIGPQQHFLEEKQASLWVQGDIFRSKLKNRPSSE--GSINKILSG 358
Query: 360 VDDISING----VENQDQQEPEPYSDDD--EINGVTQGDRLRALKSRRQSKTN------- 406
+DD+SI G +N ++ + DDD NG+TQGD+LRALKS+RQ +T+
Sbjct: 359 LDDMSIGGNLSKTQNMERFGEDNLEDDDVEMKNGITQGDKLRALKSQRQPRTSPSCAFRS 418
Query: 407 ------------AIPLTVILQSSVQSCKTSEPNISGSAGITKRTTRSASRKSSVKSLSIS 454
L+ LQ S + KTS+ +S SA + S S ++V+S SI+
Sbjct: 419 DDTKGHPRAVSQPFRLSSSLQGSAVTLKTSKMALSPSATAKRINRTSLSSGATVRSFSIN 478
>gi|15451931 CDC14 homolog A isoform 2 [Homo sapiens]
Length = 623
Score = 555 bits (1430), Expect = e-158
Identities = 271/480 (56%), Positives = 349/480 (72%), Gaps = 28/480 (5%)
Query: 1 MSREGAGAALVAEVIKDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMV 60
M+ E E +KDRL FA L +RPKS N HYFSID EL YENFYADFGPLNLAMV
Sbjct: 1 MAAESGELIGACEFMKDRLYFATLRNRPKSTVNTHYFSIDEELVYENFYADFGPLNLAMV 60
Query: 61 YRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIF 120
YRYCCK+NKKLKS ++ RKKIVH+T DQRK+ANAAFL+G Y VIYL +TPEEAYR L+
Sbjct: 61 YRYCCKLNKKLKSYSLSRKKIVHYTCFDQRKRANAAFLIGAYAVIYLKKTPEEAYRALLS 120
Query: 121 GETS-YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDL 179
G Y+PFRDA++G+C + +T+LDC ++K +Q+GF +F +F++DEYEHYE+ ENGD
Sbjct: 121 GSNPPYLPFRDASFGNCTYNLTILDCLQGIRKGLQHGFFDFETFDVDEYEHYERVENGDF 180
Query: 180 NWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDA 239
NWI+P +F+AF GPH ++++E+GY H+PE Y YFK HNVT ++RLNK++Y+AKRFTDA
Sbjct: 181 NWIVPGKFLAFSGPHPKSKIENGYPLHAPEAYFPYFKKHNVTAVVRLNKKIYEAKRFTDA 240
Query: 240 GFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMT 299
GF+H+DLFF DGSTP+D IV+ FL+ICEN EGAIAVHCKAGLGRTGTLIACY+MKHYR T
Sbjct: 241 GFEHYDLFFIDGSTPSDNIVRRFLNICENTEGAIAVHCKAGLGRTGTLIACYVMKHYRFT 300
Query: 300 AAETIAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSG 359
AE IAW+RICRPGS+IGPQQ FL KQ +LW++GD FR KLK + + + + +K+LSG
Sbjct: 301 HAEIIAWIRICRPGSIIGPQQHFLEEKQASLWVQGDIFRSKLKNRPSSE--GSINKILSG 358
Query: 360 VDDISING----VENQDQQEPEPYSDDD--EINGVTQGDRLRALKSRRQSKTN------- 406
+DD+SI G +N ++ + DDD NG+TQGD+LRALKS+RQ +T+
Sbjct: 359 LDDMSIGGNLSKTQNMERFGEDNLEDDDVEMKNGITQGDKLRALKSQRQPRTSPSCAFRS 418
Query: 407 ------------AIPLTVILQSSVQSCKTSEPNISGSAGITKRTTRSASRKSSVKSLSIS 454
L+ LQ S + KTS+ +S SA + S S ++V+S SI+
Sbjct: 419 DDTKGHPRAVSQPFRLSSSLQGSAVTLKTSKMALSPSATAKRINRTSLSSGATVRSFSIN 478
>gi|15451933 CDC14 homolog A isoform 3 [Homo sapiens]
Length = 383
Score = 520 bits (1338), Expect = e-147
Identities = 236/368 (64%), Positives = 296/368 (80%), Gaps = 3/368 (0%)
Query: 1 MSREGAGAALVAEVIKDRLCFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMV 60
M+ E E +KDRL FA L +RPKS N HYFSID EL YENFYADFGPLNLAMV
Sbjct: 1 MAAESGELIGACEFMKDRLYFATLRNRPKSTVNTHYFSIDEELVYENFYADFGPLNLAMV 60
Query: 61 YRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIF 120
YRYCCK+NKKLKS ++ RKKIVH+T DQRK+ANAAFL+G Y VIYL +TPEEAYR L+
Sbjct: 61 YRYCCKLNKKLKSYSLSRKKIVHYTCFDQRKRANAAFLIGAYAVIYLKKTPEEAYRALLS 120
Query: 121 GETS-YIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDL 179
G Y+PFRDA++G+C + +T+LDC ++K +Q+GF +F +F++DEYEHYE+ ENGD
Sbjct: 121 GSNPPYLPFRDASFGNCTYNLTILDCLQGIRKGLQHGFFDFETFDVDEYEHYERVENGDF 180
Query: 180 NWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDA 239
NWI+P +F+AF GPH ++++E+GY H+PE Y YFK HNVT ++RLNK++Y+AKRFTDA
Sbjct: 181 NWIVPGKFLAFSGPHPKSKIENGYPLHAPEAYFPYFKKHNVTAVVRLNKKIYEAKRFTDA 240
Query: 240 GFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMT 299
GF+H+DLFF DGSTP+D IV+ FL+ICEN EGAIAVHCKAGLGRTGTLIACY+MKHYR T
Sbjct: 241 GFEHYDLFFIDGSTPSDNIVRRFLNICENTEGAIAVHCKAGLGRTGTLIACYVMKHYRFT 300
Query: 300 AAETIAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFRQKLKGQENGQHRAAFSKLLSG 359
AE IAW+RICRPGS+IGPQQ FL KQ +LW++GD FR KLK + + + + +K+LSG
Sbjct: 301 HAEIIAWIRICRPGSIIGPQQHFLEEKQASLWVQGDIFRSKLKNRPSSE--GSINKILSG 358
Query: 360 VDDISING 367
+DD+SI G
Sbjct: 359 LDDMSIGG 366
>gi|30089952 protein tyrosine phosphatase domain containing 1
protein isoform 1 [Homo sapiens]
Length = 806
Score = 68.6 bits (166), Expect = 1e-11
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 164 NLDEYEHYEKAENGDLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTI 223
N + E+A G + + D +A P S L YH I F +H + TI
Sbjct: 119 NPARWSEQEQAIKGVYSSWVTDNILAMARPSSE--LLEKYH------IIDQFLSHGIKTI 170
Query: 224 IRLNKR----------------MYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICE 267
I L + Y + F +AG ++ + D + + + + +
Sbjct: 171 INLQRPGEHASCGNPLEQESGFTYLPEAFMEAGIYFYNFGWKDYGVASLTTILDMVKVMT 230
Query: 268 NA--EGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSV 315
A EG +A+HC AGLGRTG LIACY++ RMTA + I +VR RP S+
Sbjct: 231 FALQEGKVAIHCHAGLGRTGVLIACYLVFATRMTADQAIIFVRAKRPNSI 280
>gi|30089950 protein tyrosine phosphatase domain containing 1
protein isoform 2 [Homo sapiens]
Length = 754
Score = 68.6 bits (166), Expect = 1e-11
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 164 NLDEYEHYEKAENGDLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTI 223
N + E+A G + + D +A P S L YH I F +H + TI
Sbjct: 67 NPARWSEQEQAIKGVYSSWVTDNILAMARPSSE--LLEKYH------IIDQFLSHGIKTI 118
Query: 224 IRLNKR----------------MYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICE 267
I L + Y + F +AG ++ + D + + + + +
Sbjct: 119 INLQRPGEHASCGNPLEQESGFTYLPEAFMEAGIYFYNFGWKDYGVASLTTILDMVKVMT 178
Query: 268 NA--EGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSV 315
A EG +A+HC AGLGRTG LIACY++ RMTA + I +VR RP S+
Sbjct: 179 FALQEGKVAIHCHAGLGRTGVLIACYLVFATRMTADQAIIFVRAKRPNSI 228
>gi|56786144 dual specificity phosphatase 23 [Homo sapiens]
Length = 150
Score = 63.2 bits (152), Expect = 5e-10
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 178 DLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFT 237
+ +W++P R P RL + Y Q+ + V ++ L +R +
Sbjct: 7 NFSWVLPGRLAGLALP----RLPAHY---------QFLLDLGVRHLVSLTER---GPPHS 50
Query: 238 DA--GFDHHDLFFADGSTPTDAIVKEFLDICE--NAEG-AIAVHCKAGLGRTGTLIACYI 292
D+ G H L D P + F+ I + NA G A+ VHC G GRTGT++ACY+
Sbjct: 51 DSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYL 110
Query: 293 MKHYRMTAAETIAWVRICRPGSVIGPQQQFLVMK 326
+K + A + IA +R RPGS+ +Q+ V +
Sbjct: 111 VKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQ 144
>gi|14589856 protein tyrosine phosphatase type IVA, member 3 isoform
1 [Homo sapiens]
Length = 173
Score = 58.9 bits (141), Expect = 9e-09
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 210 TYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDI---- 265
T+I+ K + TT++R+ + YD G D F DG+ P +V+++L +
Sbjct: 32 TFIEDLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPPPGKVVEDWLSLVKAK 91
Query: 266 -CENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFL 323
CE +AVHC AGLGR L+A +++ M + I ++R R G++ Q +L
Sbjct: 92 FCEAPGSCVAVHCVAGLGRAPVLVALALIES-GMKYEDAIQFIRQKRRGAINSKQLTYL 149
>gi|4506283 protein tyrosine phosphatase type IVA, member 1 [Homo
sapiens]
Length = 173
Score = 55.5 bits (132), Expect = 1e-07
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 211 YIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDIC---- 266
+I+ K + VTTI+R+ + YD G D F DG+ P++ IV ++L +
Sbjct: 33 FIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKF 92
Query: 267 -ENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFLVM 325
E IAVHC AGLGR L+A +++ M + + ++R R G+ Q
Sbjct: 93 REEPGCCIAVHCVAGLGRAPVLVALALIEG-GMKYEDAVQFIRQKRRGAFNSKQL----- 146
Query: 326 KQTNLWLEGDYFRQKLKGQENGQHR 350
L+LE + +L+ +++ HR
Sbjct: 147 ----LYLEKYRPKMRLRFKDSNGHR 167
>gi|14589854 protein tyrosine phosphatase type IVA, member 3 isoform
2 [Homo sapiens]
Length = 148
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 210 TYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDI---- 265
T+I+ K + TT++R+ + YD G D F DG+ P +V+++L +
Sbjct: 32 TFIEDLKKYGATTVVRVCEVTYDKTPLEKDGITVVDWPFDDGAPPPGKVVEDWLSLVKAK 91
Query: 266 -CENAEGAIAVHCKAGLGR 283
CE +AVHC AGLGR
Sbjct: 92 FCEAPGSCVAVHCVAGLGR 110
>gi|18104971 protein tyrosine phosphatase type IVA, member 2 isoform
1 [Homo sapiens]
Length = 167
Score = 50.4 bits (119), Expect = 3e-06
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 211 YIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDIC---- 266
+ + K + VTT++R+ YD G D F DG+ P + IV ++L++
Sbjct: 30 FTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKF 89
Query: 267 -ENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFL 323
E +AVHC AGLGR L+A +++ M + + ++R R G+ Q +L
Sbjct: 90 REEPGCCVAVHCVAGLGRAPVLVALALIE-CGMKYEDAVQFIRQKRRGAFNSKQLLYL 146
>gi|21536333 dual specificity phosphatase 10 isoform b [Homo
sapiens]
Length = 140
Score = 49.7 bits (117), Expect = 6e-06
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 219 NVTTIIRL---NKRMYDAKRF--TDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAI 273
NVTT + L K +++ KR TD+ + +F + EF++ +
Sbjct: 11 NVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQYFEEAF--------EFIEEAHQCGKGL 62
Query: 274 AVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFL 323
+HC+AG+ R+ T++ Y+MKH RMT + +V+ RP +I P F+
Sbjct: 63 LIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP--IISPNLNFM 110
>gi|21536331 dual specificity phosphatase 10 isoform b [Homo
sapiens]
Length = 140
Score = 49.7 bits (117), Expect = 6e-06
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 219 NVTTIIRL---NKRMYDAKRF--TDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAI 273
NVTT + L K +++ KR TD+ + +F + EF++ +
Sbjct: 11 NVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQYFEEAF--------EFIEEAHQCGKGL 62
Query: 274 AVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFL 323
+HC+AG+ R+ T++ Y+MKH RMT + +V+ RP +I P F+
Sbjct: 63 LIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP--IISPNLNFM 110
>gi|6005812 dual specificity phosphatase 10 isoform a [Homo sapiens]
Length = 482
Score = 49.7 bits (117), Expect = 6e-06
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 219 NVTTIIRL---NKRMYDAKRF--TDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAI 273
NVTT + L K +++ KR TD+ + +F + EF++ +
Sbjct: 353 NVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQYFEEAF--------EFIEEAHQCGKGL 404
Query: 274 AVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFL 323
+HC+AG+ R+ T++ Y+MKH RMT + +V+ RP +I P F+
Sbjct: 405 LIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP--IISPNLNFM 452
>gi|169162376 PREDICTED: similar to protein tyrosine phosphatase 4a1
isoform 1 [Homo sapiens]
Length = 170
Score = 46.2 bits (108), Expect = 6e-05
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 211 YIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFL-----DI 265
+I+ K + TTI+R+ + YD G + F DG+ P++ IV ++L
Sbjct: 30 FIEELKKYGATTIVRVCEATYDTTLVEKEGIHVLNWPFGDGAPPSNQIVADWLHFVKIKF 89
Query: 266 CENAEGAIAVHCKAGLGRTGTLIA 289
CE IAV+C GLG+ L+A
Sbjct: 90 CEEPGCYIAVNCIVGLGKAPVLVA 113
>gi|4758204 dual specificity phosphatase 1 [Homo sapiens]
Length = 367
Score = 45.8 bits (107), Expect = 8e-05
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 261 EFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQ 320
+F+D +NA G + VHC+AG+ R+ T+ Y+M+ R+ E +V+ R S+I P
Sbjct: 242 DFIDSIKNAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRR--SIISPNF 299
Query: 321 QFL 323
F+
Sbjct: 300 SFM 302
>gi|51093845 dual specificity phosphatase 18 [Homo sapiens]
Length = 188
Score = 44.7 bits (104), Expect = 2e-04
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 259 VKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGP 318
+ + + E +G +HC AG+ R+ L Y+MK++ M+ + W + CRP +I P
Sbjct: 86 IADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRP--IIRP 143
Query: 319 QQQF 322
F
Sbjct: 144 NSGF 147
>gi|38372911 dual specificity phosphatase 16 [Homo sapiens]
Length = 665
Score = 43.5 bits (101), Expect = 4e-04
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 261 EFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQ 320
+F++ + + G + VHC AG+ R+ T+ YIMK M+ E +V+ RP I P
Sbjct: 228 DFIEKAKASNGCVLVHCLAGISRSATIAIAYIMKRMDMSLDEAYRFVKEKRP--TISPNF 285
Query: 321 QFL 323
FL
Sbjct: 286 NFL 288
>gi|4503417 dual specificity phosphatase 4 isoform 1 [Homo sapiens]
Length = 394
Score = 43.5 bits (101), Expect = 4e-04
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 261 EFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQ 320
E++D ++ G + VHC+AG+ R+ T+ Y+M R+ E +V+ R S+I P
Sbjct: 264 EYIDAVKDCRGRVLVHCQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRR--SIISPNF 321
Query: 321 QFL 323
F+
Sbjct: 322 SFM 324
>gi|16950652 dual specificity phosphatase 4 isoform 2 [Homo sapiens]
Length = 303
Score = 43.5 bits (101), Expect = 4e-04
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 261 EFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQ 320
E++D ++ G + VHC+AG+ R+ T+ Y+M R+ E +V+ R S+I P
Sbjct: 173 EYIDAVKDCRGRVLVHCQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRR--SIISPNF 230
Query: 321 QFL 323
F+
Sbjct: 231 SFM 233
>gi|5902002 dual specificity phosphatase 14 [Homo sapiens]
Length = 198
Score = 42.7 bits (99), Expect = 7e-04
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 271 GAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQF 322
GA VHC AG+ R+ TL Y+MK + + E WV+ RP VI P F
Sbjct: 105 GATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRP--VIRPNVGF 154
>gi|73765544 phosphatase and tensin homolog [Homo sapiens]
Length = 403
Score = 42.4 bits (98), Expect = 9e-04
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 178 DLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYF--KNHNVTTIIRL-NKRMYDAK 234
DL +I P+ IA P R G ++++ + +++ K+ N I L +R YD
Sbjct: 24 DLTYIYPN-IIAMGFPAERLE---GVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTA 79
Query: 235 RFTDAGFDHHDLFFADGSTPTDAIVKEFLD-----ICENAEGAIAVHCKAGLGRTGTLIA 289
+F + F D + P ++K F + + E+ A+HCKAG GRTG +I
Sbjct: 80 KFNCRVAQYP---FEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMIC 136
Query: 290 CYIMKHYRMTAAE 302
Y++ + A+
Sbjct: 137 AYLLHRGKFLKAQ 149
>gi|4758206 dual specificity phosphatase 2 [Homo sapiens]
Length = 314
Score = 42.4 bits (98), Expect = 9e-04
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 262 FLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQ 321
F+D +N+ G + VHC+AG+ R+ T+ Y+M+ R+ E +V+ R VI P
Sbjct: 242 FIDWVKNSGGRVLVHCQAGISRSATICLAYLMQSRRVRLDEAFDFVKQRR--GVISPNFS 299
Query: 322 FL 323
F+
Sbjct: 300 FM 301
>gi|62865890 dual specificity phosphatase 5 [Homo sapiens]
Length = 384
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 199 LESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDA--KRFTDAGFDHHDLFFADGSTPTD 256
L S YH E + N ++T ++ +++R +A D AD S+
Sbjct: 188 LGSAYHASKCE----FLANLHITALLNVSRRTSEACATHLHYKWIPVEDSHTADISSHFQ 243
Query: 257 AIVKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVI 316
+ +F+D G + VHC+AG+ R+ T+ Y+MK + E +++ R S++
Sbjct: 244 EAI-DFIDCVREKGGKVLVHCEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRR--SMV 300
Query: 317 GPQQQFL 323
P F+
Sbjct: 301 SPNFGFM 307
>gi|213972593 TPTE and PTEN homologous inositol lipid phosphatase
isoform delta [Homo sapiens]
Length = 411
Score = 41.2 bits (95), Expect = 0.002
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 140 ITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPHSRARL 199
I L+ FH + + Q L + ++ + + DL ++ +R IA P S +
Sbjct: 71 IILIRIFHLLHQKRQLEKLMRRLVSENKRRYTRDGFDLDLTYVT-ERIIAMSFPSSGRQ- 128
Query: 200 ESGYHQHSPETYIQYF--KNHNVTTIIRL-NKRMYDAKRFTDAGFDHHDLFFADGSTPT- 255
++++ E +++ K+ N + L ++R YD K F + + D + PT
Sbjct: 129 --SFYRNPIEEVVRFLDKKHRNHYRVYNLCSERAYDPKHFHNRV---SRIMIDDHNVPTL 183
Query: 256 ---DAIVKEFLD-ICENAEGAIAVHCKAGLGRTGTLI-ACYIMKHYRMTAAETI 304
KE + + ++ E +A+HCK G GRTGT++ A I +TA E++
Sbjct: 184 HEMVVFTKEVNEWMAQDLENIVAIHCKGGKGRTGTMVCALLIASEIFLTAEESL 237
>gi|213972591 TPTE and PTEN homologous inositol lipid phosphatase
isoform gamma [Homo sapiens]
Length = 522
Score = 41.2 bits (95), Expect = 0.002
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 140 ITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPHSRARL 199
I L+ FH + + Q L + ++ + + DL ++ +R IA P S +
Sbjct: 182 IILIRIFHLLHQKRQLEKLMRRLVSENKRRYTRDGFDLDLTYVT-ERIIAMSFPSSGRQ- 239
Query: 200 ESGYHQHSPETYIQYF--KNHNVTTIIRL-NKRMYDAKRFTDAGFDHHDLFFADGSTPT- 255
++++ E +++ K+ N + L ++R YD K F + + D + PT
Sbjct: 240 --SFYRNPIEEVVRFLDKKHRNHYRVYNLCSERAYDPKHFHNRV---SRIMIDDHNVPTL 294
Query: 256 ---DAIVKEFLD-ICENAEGAIAVHCKAGLGRTGTLI-ACYIMKHYRMTAAETI 304
KE + + ++ E +A+HCK G GRTGT++ A I +TA E++
Sbjct: 295 HEMVVFTKEVNEWMAQDLENIVAIHCKGGKGRTGTMVCALLIASEIFLTAEESL 348
>gi|213972589 TPTE and PTEN homologous inositol lipid phosphatase
isoform alpha [Homo sapiens]
Length = 445
Score = 41.2 bits (95), Expect = 0.002
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 140 ITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPHSRARL 199
I L+ FH + + Q L + ++ + + DL ++ +R IA P S +
Sbjct: 105 IILIRIFHLLHQKRQLEKLMRRLVSENKRRYTRDGFDLDLTYVT-ERIIAMSFPSSGRQ- 162
Query: 200 ESGYHQHSPETYIQYF--KNHNVTTIIRL-NKRMYDAKRFTDAGFDHHDLFFADGSTPT- 255
++++ E +++ K+ N + L ++R YD K F + + D + PT
Sbjct: 163 --SFYRNPIEEVVRFLDKKHRNHYRVYNLCSERAYDPKHFHNRV---SRIMIDDHNVPTL 217
Query: 256 ---DAIVKEFLD-ICENAEGAIAVHCKAGLGRTGTLI-ACYIMKHYRMTAAETI 304
KE + + ++ E +A+HCK G GRTGT++ A I +TA E++
Sbjct: 218 HEMVVFTKEVNEWMAQDLENIVAIHCKGGKGRTGTMVCALLIASEIFLTAEESL 271
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 40.8 bits (94), Expect = 0.003
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 261 EFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQ 320
EF+D + + + VHC AG+ R+ T+ YIMK M++ + +V+ RP I P
Sbjct: 230 EFIDKAKLSSCQVIVHCLAGISRSATIAIAYIMKTMGMSSDDAYRFVKDRRPS--ISPNF 287
Query: 321 QFL 323
FL
Sbjct: 288 NFL 290
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,447,842
Number of Sequences: 37866
Number of extensions: 700864
Number of successful extensions: 1739
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1572
Number of HSP's gapped (non-prelim): 183
length of query: 461
length of database: 18,247,518
effective HSP length: 106
effective length of query: 355
effective length of database: 14,233,722
effective search space: 5052971310
effective search space used: 5052971310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.