Search of human proteins with 23503275

Search of human proteins with 23503275

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23503275 transmembrane protein 86A [Homo sapiens]
         (240 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23503275 transmembrane protein 86A [Homo sapiens]                  488   e-138
gi|31543174 transmembrane protein 86B [Homo sapiens]                  130   1e-30
gi|4507001 solute carrier family 22 member 2 [Homo sapiens]            30   1.4  
gi|4502387 opsin 1 (cone pigments), short-wave-sensitive [Homo s...    30   1.9  
gi|23510410 solute carrier family 22 member 1 isoform b [Homo sa...    28   5.4  
gi|4506999 solute carrier family 22 member 1 isoform a [Homo sap...    28   5.4  
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]       28   5.4  
gi|17921982 heme A:farnesyltransferase [Homo sapiens]                  28   9.2  

>gi|23503275 transmembrane protein 86A [Homo sapiens]
          Length = 240

 Score =  488 bits (1257), Expect = e-138
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MVSPVTVVKSEGPKLVPFFKATCVYFVLWLPSSSPSWVSTLIKCLPIFCLWLFLLAHGLG 60
           MVSPVTVVKSEGPKLVPFFKATCVYFVLWLPSSSPSWVSTLIKCLPIFCLWLFLLAHGLG
Sbjct: 1   MVSPVTVVKSEGPKLVPFFKATCVYFVLWLPSSSPSWVSTLIKCLPIFCLWLFLLAHGLG 60

Query: 61  FLLAHPSATRIFVGLVFSAVGDAFLIWQDQGYFVHGLLMFAVTHMFYASAFGMQPLALRT 120
           FLLAHPSATRIFVGLVFSAVGDAFLIWQDQGYFVHGLLMFAVTHMFYASAFGMQPLALRT
Sbjct: 61  FLLAHPSATRIFVGLVFSAVGDAFLIWQDQGYFVHGLLMFAVTHMFYASAFGMQPLALRT 120

Query: 121 GLVMAALSGLCYALLYPCLSGAFTYLVGVYVALIGFMGWRAMAGLRLAGADWRWTELAAG 180
           GLVMAALSGLCYALLYPCLSGAFTYLVGVYVALIGFMGWRAMAGLRLAGADWRWTELAAG
Sbjct: 121 GLVMAALSGLCYALLYPCLSGAFTYLVGVYVALIGFMGWRAMAGLRLAGADWRWTELAAG 180

Query: 181 SGALFFIISDLTIALNKFCFPVPYSRALIMSTYYVAQMLVALSAVESREPVEHYRLTKAN 240
           SGALFFIISDLTIALNKFCFPVPYSRALIMSTYYVAQMLVALSAVESREPVEHYRLTKAN
Sbjct: 181 SGALFFIISDLTIALNKFCFPVPYSRALIMSTYYVAQMLVALSAVESREPVEHYRLTKAN 240


>gi|31543174 transmembrane protein 86B [Homo sapiens]
          Length = 226

 Score =  130 bits (327), Expect = 1e-30
 Identities = 84/219 (38%), Positives = 117/219 (53%), Gaps = 23/219 (10%)

Query: 15  LVPFFKATCVYFVLWLPSSSPSWVSTLIKCLPIFCL--WLFLLAHGLGFLLAHPSATRIF 72
           L PF  + CVYF LW+P    SW + L+KCLP+ CL  +L++++   G+       T++ 
Sbjct: 25  LSPFILSCCVYFCLWIPEDQLSWFAALVKCLPVLCLAGFLWVMSPSGGY-------TQLL 77

Query: 73  VG-LVFSAVGDAFLIWQDQGYFVHGLLMFAVTHMFYASAFGMQPLALRTGLVMAALSGLC 131
            G LV SAVGDA LIW     FV G+  FA  H+ Y  AFG  PL     L++    G  
Sbjct: 78  QGALVCSAVGDACLIWP--AAFVPGMAAFATAHLLYVWAFGFSPLQPGLLLLIILAPGPY 135

Query: 132 YALLYPCLSGAFTYLVGVYVALIGFMGWRAMAGLRLAGADWRWTELAAGSGALFFIISDL 191
            +L+   L       V  Y  ++  M WR   GL   G+        AG GAL F +SD 
Sbjct: 136 LSLVLQHLEPDMVLPVAAYGLILMAMLWR---GLAQGGS--------AGWGALLFTLSDG 184

Query: 192 TIALNKFCFPVPYSRALIMSTYYVAQMLVALSAVESREP 230
            +A + F  P+P++R +IM+TYY AQ+L+ LSA+ S  P
Sbjct: 185 VLAWDTFAQPLPHARLVIMTTYYAAQLLITLSALRSPVP 223


>gi|4507001 solute carrier family 22 member 2 [Homo sapiens]
          Length = 555

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 17/68 (25%), Positives = 30/68 (44%)

Query: 121 GLVMAALSGLCYALLYPCLSGAFTYLVGVYVALIGFMGWRAMAGLRLAGADWRWTELAAG 180
           GLV  A   + Y L+   +   +   VG++  +   +G   +AG+  A   WRW +    
Sbjct: 211 GLVSKAGWLIGYILITEFVGRRYRRTVGIFYQVAYTVGLLVLAGVAYALPHWRWLQFTVA 270

Query: 181 SGALFFII 188
               FF++
Sbjct: 271 LPNFFFLL 278


>gi|4502387 opsin 1 (cone pigments), short-wave-sensitive [Homo
           sapiens]
          Length = 348

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 18/91 (19%)

Query: 144 TYLVGVYVALIGFMGWRAM--AGLRLA-GADWR--WTELAAGSGALFFIISDLTIALNKF 198
           T+ +G+ V++  F GW      GL+ + G DW    T+  + S   F  I         F
Sbjct: 157 TWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFI---------F 207

Query: 199 CFPVPYSRALIMSTYYVAQMLVALSAVESRE 229
           CF VP S  LI  +Y   Q+L AL AV +++
Sbjct: 208 CFIVPLS--LICFSY--TQLLRALKAVAAQQ 234


>gi|23510410 solute carrier family 22 member 1 isoform b [Homo
           sapiens]
          Length = 506

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 94  VHGLLMFAVTHMFYASAFGMQPLALRTGLVMAALSGLCYALLYPCLSGAFTYLVGVYVAL 153
           V G+LM      F  +   M    L  GLV        Y L+   +       V +   +
Sbjct: 188 VSGVLM-----AFSPNYMSMLLFRLLQGLVSKGNWMAGYTLITEFVGSGSRRTVAIMYQM 242

Query: 154 IGFMGWRAMAGLRLAGADWRWTELAAGSGALFFII 188
              +G  A+ GL  A   WRW +LA       F++
Sbjct: 243 AFTVGLVALTGLAYALPHWRWLQLAVSLPTFLFLL 277


>gi|4506999 solute carrier family 22 member 1 isoform a [Homo
           sapiens]
          Length = 554

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 94  VHGLLMFAVTHMFYASAFGMQPLALRTGLVMAALSGLCYALLYPCLSGAFTYLVGVYVAL 153
           V G+LM      F  +   M    L  GLV        Y L+   +       V +   +
Sbjct: 188 VSGVLM-----AFSPNYMSMLLFRLLQGLVSKGNWMAGYTLITEFVGSGSRRTVAIMYQM 242

Query: 154 IGFMGWRAMAGLRLAGADWRWTELAAGSGALFFII 188
              +G  A+ GL  A   WRW +LA       F++
Sbjct: 243 AFTVGLVALTGLAYALPHWRWLQLAVSLPTFLFLL 277


>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
          Length = 981

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 24/95 (25%)

Query: 153 LIGFMGWRAMAGLRLAGADWRWTELAAGSGALFFIISDLTIALNKFCFPVP--------- 203
           L G  GW A  G RL           A +GAL  + S L +A   + +P P         
Sbjct: 625 LDGPRGWDASPGPRLL----------AVAGALGLLASGLQLAAALWLYPGPGRVGRFSWA 674

Query: 204 -----YSRALIMSTYYVAQMLVALSAVESREPVEH 233
                +   L+  T+ +A  L A++A   R P EH
Sbjct: 675 WWGVHFWLRLLELTWALALALAAVAAARPRPPTEH 709


>gi|17921982 heme A:farnesyltransferase [Homo sapiens]
          Length = 443

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 112 GMQPLALRTGLVMAALSGLCYALLYPCLSGAFTYLVGVYVALIGFMGWRAMAGLRLAGA 170
           G+ PL    GL    L   CY  L   +S A T++  V  A+   MGW A  G   AGA
Sbjct: 254 GVNPLTGALGLFNIFLYTCCYTPLKR-ISIANTWVGAVVGAIPPVMGWTAATGSLDAGA 311


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,394,481
Number of Sequences: 37866
Number of extensions: 332137
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 9
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.