Guide to the Human Genome
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Name: TMEM86A Sequence: fasta or formatted (240aa) NCBI GI: 23503275
Description:

transmembrane protein 86A

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         28           2
 C cysteine            2.5          6           1
 D aspartate           1.7          4           1
 E glutamate           2.1          5           1
 F phenylalanine       7.9         19           2
 G glycine             7.5         18           1
 H histidine           2.1          5           1
 I isoleucine          3.8          9           2
 K lysine              2.5          6           1
 L leucine            15.0         36           2
 M methionine          3.8          9           1
 N asparagine          0.8          2           1
 P proline             5.0         12           1
 Q glutamine           1.7          4           1
 R arginine            3.3          8           1
 S serine              7.5         18           3
 T threonine           4.6         11           1
 V valine              9.2         22           2
 W tryptophan          2.9          7           1
 Y tyrosine            4.6         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 86A 
TMEM86B               0.227   transmembrane protein 86B 
SLC22A2               0.011   solute carrier family 22 member 2 
OPN1SW                0.011   opsin 1 (cone pigments), short-wave-sensitive 
SLC22A1               0.006   solute carrier family 22 member 1 isoform b 
SLC22A1               0.006   solute carrier family 22 member 1 isoform a 
PRRT3                 0.006   proline-rich transmembrane protein 3 
COX10                 0.006   heme A:farnesyltransferase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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