Search of human proteins with 22547134

Search of human proteins with 22547134

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22547134 mitochondrial ribosomal protein L37 [Homo sapiens]
         (423 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22547134 mitochondrial ribosomal protein L37 [Homo sapiens]        881   0.0  
gi|58331150 mitochondrial ribosomal protein S30 [Homo sapiens]         45   2e-04
gi|239753127 PREDICTED: hypothetical protein [Homo sapiens]            30   4.1  
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ...    30   4.1  
gi|239741559 PREDICTED: hypothetical protein XP_002342239 [Homo ...    30   4.1  
gi|58331179 KIAA1688 protein [Homo sapiens]                            30   4.1  
gi|224465194 secernin 1 isoform a [Homo sapiens]                       29   7.1  
gi|224465192 secernin 1 isoform c [Homo sapiens]                       29   7.1  
gi|224465190 secernin 1 isoform b [Homo sapiens]                       29   7.1  
gi|224465187 secernin 1 isoform a [Homo sapiens]                       29   7.1  
gi|33286436 gametogenetin [Homo sapiens]                               29   7.1  
gi|4557845 ribonucleotide reductase M2 polypeptide [Homo sapiens]      29   9.2  

>gi|22547134 mitochondrial ribosomal protein L37 [Homo sapiens]
          Length = 423

 Score =  881 bits (2276), Expect = 0.0
 Identities = 423/423 (100%), Positives = 423/423 (100%)

Query: 1   MALASGPARRALAGSGQLGLGGFGAPRRGAYEWGVRSTRKSEPPPLDRVYEIPGLEPITF 60
           MALASGPARRALAGSGQLGLGGFGAPRRGAYEWGVRSTRKSEPPPLDRVYEIPGLEPITF
Sbjct: 1   MALASGPARRALAGSGQLGLGGFGAPRRGAYEWGVRSTRKSEPPPLDRVYEIPGLEPITF 60

Query: 61  AGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYKDQACYIFHHRCRLLEGVKQA 120
           AGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYKDQACYIFHHRCRLLEGVKQA
Sbjct: 61  AGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYKDQACYIFHHRCRLLEGVKQA 120

Query: 121 LWLTKTKLIEGLPEKVLSLVDDPRNHIENQDECVLNVISHARLWQTTEEIPKRETYCPVI 180
           LWLTKTKLIEGLPEKVLSLVDDPRNHIENQDECVLNVISHARLWQTTEEIPKRETYCPVI
Sbjct: 121 LWLTKTKLIEGLPEKVLSLVDDPRNHIENQDECVLNVISHARLWQTTEEIPKRETYCPVI 180

Query: 181 VDNLIQLCKSQILKHPSLARRICVQNSTFSATWNRESLLLQVRGSGGARLSTKDPLPTIA 240
           VDNLIQLCKSQILKHPSLARRICVQNSTFSATWNRESLLLQVRGSGGARLSTKDPLPTIA
Sbjct: 181 VDNLIQLCKSQILKHPSLARRICVQNSTFSATWNRESLLLQVRGSGGARLSTKDPLPTIA 240

Query: 241 SREEIEATKNHVLETFYPISPIIDLHECNIYDVKNDTGFQEGYPYPYPHTLYLLDKANLR 300
           SREEIEATKNHVLETFYPISPIIDLHECNIYDVKNDTGFQEGYPYPYPHTLYLLDKANLR
Sbjct: 241 SREEIEATKNHVLETFYPISPIIDLHECNIYDVKNDTGFQEGYPYPYPHTLYLLDKANLR 300

Query: 301 PHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLN 360
           PHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLN
Sbjct: 301 PHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLN 360

Query: 361 TTDLDCNEGVKNLAWVDSDQLLYQHFWCLPVIKKRVVVEPVGPVGFKPETFRKFLALYLH 420
           TTDLDCNEGVKNLAWVDSDQLLYQHFWCLPVIKKRVVVEPVGPVGFKPETFRKFLALYLH
Sbjct: 361 TTDLDCNEGVKNLAWVDSDQLLYQHFWCLPVIKKRVVVEPVGPVGFKPETFRKFLALYLH 420

Query: 421 GAA 423
           GAA
Sbjct: 421 GAA 423


>gi|58331150 mitochondrial ribosomal protein S30 [Homo sapiens]
          Length = 439

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 14/120 (11%)

Query: 278 GFQEGYPYPYPHTLYLLDKANLRPHRLQ----PDQL----RAKMILFAFGSALAQARLL- 328
           G +   P  Y HT + L    LR  RL      DQ+    RA  I   F    AQA    
Sbjct: 285 GSKTADPCCYGHTQFHLLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQG 344

Query: 329 YGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLN----TTDLDCNEGVKNLAWVDSDQLLYQ 384
           + ++A V  +P V Q+V TDG+ F F  +QLN    TT  D N   KN+ W    + LY+
Sbjct: 345 FWSEADVT-RPFVSQAVITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYE 403


>gi|239753127 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 172

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 384 QHFWCLPVIKKRVVVEPVGPVGFKPETFRKFLALYLHGAA 423
           Q  WC P+ K+   + P+GP G+KP      + L+    A
Sbjct: 32  QASWCHPLQKQANYLLPLGPEGWKPPRAHSIMGLFCTSTA 71


>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
           sapiens]
          Length = 761

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 43  PPPLDRVYEIPGLEPITFAGKMHFVPWL-ARPIF-PPWDRGYKD-PRFYRSPP 92
           PPP  R++  PG  P   A      P L ARP F PP  RG+     FY  PP
Sbjct: 168 PPPPQRLFARPGFLPTPAAATAFCPPRLFARPGFLPPHRRGFLPLTAFYPPPP 220


>gi|239741559 PREDICTED: hypothetical protein XP_002342239 [Homo
           sapiens]
          Length = 172

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 384 QHFWCLPVIKKRVVVEPVGPVGFKPETFRKFLALYLHGAA 423
           Q  WC P+ K+   + P+GP G+KP      + L+    A
Sbjct: 32  QASWCHPLQKQANYLLPLGPEGWKPPRAHSIMGLFCTSTA 71


>gi|58331179 KIAA1688 protein [Homo sapiens]
          Length = 1114

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 43  PPPLDRVYEIPGLEPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYKDQ 102
           P P  +  E+PG             P LA+P  P  D     PR+   PPL+E P  + Q
Sbjct: 272 PSPFLKRAELPGSSS----------PLLAQPRKPSGDSQPSSPRYGYEPPLYEEPPVEYQ 321

Query: 103 A 103
           A
Sbjct: 322 A 322


>gi|224465194 secernin 1 isoform a [Homo sapiens]
          Length = 414

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 56  EPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYK 100
           +P  F   +  VP    P F   D   K+PRF   P    H LYK
Sbjct: 306 KPFIFVDDVKLVPKTQSPCFGDDDPAKKEPRFQEKPD-RRHELYK 349


>gi|224465192 secernin 1 isoform c [Homo sapiens]
          Length = 346

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 56  EPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYK 100
           +P  F   +  VP    P F   D   K+PRF   P    H LYK
Sbjct: 238 KPFIFVDDVKLVPKTQSPCFGDDDPAKKEPRFQEKPD-RRHELYK 281


>gi|224465190 secernin 1 isoform b [Homo sapiens]
          Length = 434

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 56  EPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYK 100
           +P  F   +  VP    P F   D   K+PRF   P    H LYK
Sbjct: 326 KPFIFVDDVKLVPKTQSPCFGDDDPAKKEPRFQEKPD-RRHELYK 369


>gi|224465187 secernin 1 isoform a [Homo sapiens]
          Length = 414

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 56  EPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYK 100
           +P  F   +  VP    P F   D   K+PRF   P    H LYK
Sbjct: 306 KPFIFVDDVKLVPKTQSPCFGDDDPAKKEPRFQEKPD-RRHELYK 349


>gi|33286436 gametogenetin [Homo sapiens]
          Length = 652

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 10/38 (26%)

Query: 21  GGFGAPRRGAY----EWGVRSTRKSEPPPLDRVYEIPG 54
           GG GAPRR A      WG      S PPP ++++  PG
Sbjct: 371 GGIGAPRRRAAALSGPWG------SPPPPPEQIHSAPG 402


>gi|4557845 ribonucleotide reductase M2 polypeptide [Homo sapiens]
          Length = 389

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 32  EWGVRSTRKSEPPPLDRVYEIPGLEPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSP 91
           +W +R     E    +RV     +E I F+G    + WL +    P         F    
Sbjct: 208 DWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMP------GLTFSNEL 261

Query: 92  PLHEHPLYKDQACYIFHHRC------RLLEGVKQALWLTKTKLIEGLPEKVLSL 139
              +  L+ D AC +F H        R+ E +  A+ + +  L E LP K++ +
Sbjct: 262 ISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGM 315


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,314,094
Number of Sequences: 37866
Number of extensions: 892674
Number of successful extensions: 1840
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1833
Number of HSP's gapped (non-prelim): 14
length of query: 423
length of database: 18,247,518
effective HSP length: 105
effective length of query: 318
effective length of database: 14,271,588
effective search space: 4538364984
effective search space used: 4538364984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.