Guide to the Human Genome
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Name: PDXK Sequence: fasta or formatted (312aa) NCBI GI: 4505701
Description:

pyridoxal kinase

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         18           2
 C cysteine            1.3          4           1
 D aspartate           5.8         18           1
 E glutamate           6.7         21           3
 F phenylalanine       2.2          7           1
 G glycine             6.1         19           1
 H histidine           2.9          9           2
 I isoleucine          4.5         14           2
 K lysine              4.5         14           1
 L leucine            10.3         32           2
 M methionine          3.8         12           1
 N asparagine          4.2         13           2
 P proline             4.8         15           1
 Q glutamine           5.8         18           2
 R arginine            5.8         18           3
 S serine              6.1         19           2
 T threonine           4.2         13           1
 V valine             11.2         35           2
 W tryptophan          1.0          3           1
 Y tyrosine            3.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pyridoxal kinase 
RBKS                  0.015   ribokinase 
SMAP2                 0.013   small ArfGAP2 
LOC100129826          0.007   PREDICTED: hypothetical protein LOC100129826 
RGL3                  0.007   ral guanine nucleotide dissociation stimulator-like...
RGL3                  0.007   ral guanine nucleotide dissociation stimulator-like...
FAM91A1               0.007   hypothetical protein LOC157769 
CCDC94                0.007   coiled-coil domain containing 94 
PDPR                  0.007   pyruvate dehydrogenase phosphatase regulatory subun...
SGTB                  0.005   small glutamine-rich tetratricopeptide repeat (TPR)-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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