Search of human proteins with 224593758

Search of human proteins with 224593758

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224593758 hypothetical protein LOC100130522 isoform 1 [Homo
sapiens]
         (100 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224593758 hypothetical protein LOC100130522 isoform 1 [Homo s...   209   3e-55
gi|224593760 hypothetical protein LOC100130522 isoform 2 [Homo s...   134   1e-32
gi|224593762 hypothetical protein LOC100130522 isoform 3 [Homo s...    70   5e-13
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap...    30   0.41 
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]               26   5.9  
gi|21536476 diphthamide biosynthesis protein 2 isoform a [Homo s...    26   5.9  
gi|47132591 protein kinase N1 isoform 1 [Homo sapiens]                 26   7.8  
gi|47132589 protein kinase N1 isoform 2 [Homo sapiens]                 26   7.8  

>gi|224593758 hypothetical protein LOC100130522 isoform 1 [Homo
           sapiens]
          Length = 100

 Score =  209 bits (533), Expect = 3e-55
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD 60
           MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD
Sbjct: 1   MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD 60

Query: 61  TVSVTRGEIEVWSYEALTVTSFQTKDFLRNIFLQITPSVT 100
           TVSVTRGEIEVWSYEALTVTSFQTKDFLRNIFLQITPSVT
Sbjct: 61  TVSVTRGEIEVWSYEALTVTSFQTKDFLRNIFLQITPSVT 100


>gi|224593760 hypothetical protein LOC100130522 isoform 2 [Homo
          sapiens]
          Length = 100

 Score =  134 bits (338), Expect = 1e-32
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD 60
          MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD
Sbjct: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRD 60

Query: 61 T 61
          T
Sbjct: 61 T 61


>gi|224593762 hypothetical protein LOC100130522 isoform 3 [Homo
          sapiens]
          Length = 64

 Score = 69.7 bits (169), Expect = 5e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR 32
          MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR
Sbjct: 1  MSPPRLSSSLGAHLPCIVPSPVLDCIRPRLLR 32


>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
           sapiens]
          Length = 501

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 2   SPPRLSSS----LGAHLPCIVPSPVLDCIRPRLLRKWD---LGSWPAPGLSAPH 48
           +PPRLS      LG H+ C  PSP L+ +   L ++ +   L +  +PG   PH
Sbjct: 394 APPRLSFRKLVLLGPHVLCAPPSPTLESMAQVLSQRLEAEGLSTLQSPGQLHPH 447


>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
          Length = 1910

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 4    PRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRDTV 62
            P++S S+ A L C VPS       P L ++  L + P P  S   + C+      R  V
Sbjct: 1343 PQMSPSVAASLSCPVPS-----TPPELSQRATLDTVPPPPPSKVGKRCRKTSDPRRSIV 1396


>gi|21536476 diphthamide biosynthesis protein 2 isoform a [Homo
           sapiens]
          Length = 489

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 6   LSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRDTVSVT 65
           L+  LGA  P +  S     + P  L      +WP PGL+    H   LL      V++ 
Sbjct: 339 LACPLGALAPQLSGSFFQPILAPCELEAACNPAWPPPGLAPHLTHYADLLPGSPFHVALP 398

Query: 66  RGEIEVW 72
             E E+W
Sbjct: 399 PPESELW 405


>gi|47132591 protein kinase N1 isoform 1 [Homo sapiens]
          Length = 948

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 2   SPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRDT 61
           S P+ SS      P  + SP+ +   P L  +      P P L +P R     L DF+  
Sbjct: 567 SSPQKSSRDPPSSPSSLSSPIQESTAPELPSETQ--ETPGPALCSPLRKSPLTLEDFKFL 624

Query: 62  VSVTRG 67
             + RG
Sbjct: 625 AVLGRG 630


>gi|47132589 protein kinase N1 isoform 2 [Homo sapiens]
          Length = 942

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 2   SPPRLSSSLGAHLPCIVPSPVLDCIRPRLLRKWDLGSWPAPGLSAPHRHCKSLLSDFRDT 61
           S P+ SS      P  + SP+ +   P L  +      P P L +P R     L DF+  
Sbjct: 561 SSPQKSSRDPPSSPSSLSSPIQESTAPELPSETQ--ETPGPALCSPLRKSPLTLEDFKFL 618

Query: 62  VSVTRG 67
             + RG
Sbjct: 619 AVLGRG 624


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,334,862
Number of Sequences: 37866
Number of extensions: 190760
Number of successful extensions: 356
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 8
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.