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Search of human proteins with 221554543
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221554543 suppressor of cancer cell invasion isoform 2 [Homo
sapiens]
(606 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221554543 suppressor of cancer cell invasion isoform 2 [Homo ... 1222 0.0
gi|116256473 suppressor of cancer cell invasion isoform 1 [Homo ... 1208 0.0
gi|153070264 meprin A beta [Homo sapiens] 32 1.3
gi|151101151 coiled-coil domain containing 2 isoform b [Homo sap... 32 1.7
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap... 32 1.7
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap... 32 1.7
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap... 32 1.7
gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens] 32 2.2
gi|56676335 RAP1 interacting factor 1 [Homo sapiens] 31 2.9
gi|4557287 angiotensinogen preproprotein [Homo sapiens] 31 3.8
gi|145309311 ubiquitin specific protease 9, X-linked isoform 4 [... 31 3.8
gi|145309309 ubiquitin specific protease 9, X-linked isoform 3 [... 31 3.8
gi|144446030 lymphocyte antigen 75 [Homo sapiens] 31 3.8
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 31 3.8
gi|71834870 Sad1 and UNC84 domain containing 1 [Homo sapiens] 30 6.4
gi|71834868 Sad1 and UNC84 domain containing 1 [Homo sapiens] 30 6.4
gi|45580742 dehydrodolichyl diphosphate synthase isoform a [Homo... 30 6.4
>gi|221554543 suppressor of cancer cell invasion isoform 2 [Homo
sapiens]
Length = 606
Score = 1222 bits (3162), Expect = 0.0
Identities = 606/606 (100%), Positives = 606/606 (100%)
Query: 1 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFALKEIMSSGGAEDDIPQGERKTVT 60
MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFALKEIMSSGGAEDDIPQGERKTVT
Sbjct: 1 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFALKEIMSSGGAEDDIPQGERKTVT 60
Query: 61 DFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKR 120
DFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKR
Sbjct: 61 DFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKR 120
Query: 121 WQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLR 180
WQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLR
Sbjct: 121 WQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLR 180
Query: 181 YYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPV 240
YYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPV
Sbjct: 181 YYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPV 240
Query: 241 MVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRM 300
MVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRM
Sbjct: 241 MVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRM 300
Query: 301 LQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPAN 360
LQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPAN
Sbjct: 301 LQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPAN 360
Query: 361 SVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGD 420
SVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGD
Sbjct: 361 SVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGD 420
Query: 421 LYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLN 480
LYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLN
Sbjct: 421 LYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLN 480
Query: 481 NPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLL 540
NPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLL
Sbjct: 481 NPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLL 540
Query: 541 LTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFE 600
LTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFE
Sbjct: 541 LTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFE 600
Query: 601 NTIDDY 606
NTIDDY
Sbjct: 601 NTIDDY 606
>gi|116256473 suppressor of cancer cell invasion isoform 1 [Homo
sapiens]
Length = 629
Score = 1208 bits (3125), Expect = 0.0
Identities = 605/629 (96%), Positives = 606/629 (96%), Gaps = 23/629 (3%)
Query: 1 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRS-----------------------RTEFA 37
MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRS +TEFA
Sbjct: 1 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSSIRGSGDSSHSQSQGERYQHFTEKTEFA 60
Query: 38 LKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDV 97
LKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDV
Sbjct: 61 LKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDV 120
Query: 98 YTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAI 157
YTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAI
Sbjct: 121 YTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAI 180
Query: 158 RQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFN 217
RQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFN
Sbjct: 181 RQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFN 240
Query: 218 TEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLAD 277
TEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLAD
Sbjct: 241 TEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLAD 300
Query: 278 ALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYL 337
ALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYL
Sbjct: 301 ALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYL 360
Query: 338 LYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDI 397
LYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDI
Sbjct: 361 LYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDI 420
Query: 398 INGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLS 457
INGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLS
Sbjct: 421 INGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLS 480
Query: 458 PTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQL 517
PTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQL
Sbjct: 481 PTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQL 540
Query: 518 LTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVE 577
LTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVE
Sbjct: 541 LTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVE 600
Query: 578 NPHLQKHILELASILDVRNVFFENTIDDY 606
NPHLQKHILELASILDVRNVFFENTIDDY
Sbjct: 601 NPHLQKHILELASILDVRNVFFENTIDDY 629
>gi|153070264 meprin A beta [Homo sapiens]
Length = 701
Score = 32.3 bits (72), Expect = 1.3
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 442 KNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLN-----NPLMAFLFVSGLSSMR 496
+NFT G P L SP Y S +G F ++LN N + F +SG + +
Sbjct: 435 RNFTQFIGSPNGTLYSPPFY-------SSKGYAFQIYLNLAHVTNAGIYFHLISGANDDQ 487
Query: 497 RGL---WEKCQEYLRKINRDIAQLLTHSRSI 524
W++ L N DI Q +++ RSI
Sbjct: 488 LQWPCPWQQATMTLLDQNPDIRQRMSNQRSI 518
>gi|151101151 coiled-coil domain containing 2 isoform b [Homo
sapiens]
Length = 372
Score = 32.0 bits (71), Expect = 1.7
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 50/229 (21%)
Query: 109 RQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNK 168
RQ+LD Y L G + SKI +L T+E + L + Y+ ++ S Y ++
Sbjct: 89 RQILDKSYYL-----GLLRSKISEL-------TTEVNKLQKGIEMYN--QENSVY--LSY 132
Query: 169 EDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVL 228
E R E + + +KEL ++ DY D++ N +
Sbjct: 133 EKRAETLAVE-----------------------IKELQGQLADYNMLV---DKLNTNTEM 166
Query: 229 QEVAAFIEADPVMVLNDDNT----IVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNC 284
+EV + + + ND T ++ T + E +E+ + + + D + +
Sbjct: 167 EEVMN--DYNMLKAQNDRETQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSF 224
Query: 285 NNQVKFSELTVDMFRMLQALEREPMNLASQ-MNKPGMQ-ESADKPTRRE 331
NQVK+ E+ ++LQ L+ L SQ M K ++ E A ++E
Sbjct: 225 ENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQE 273
>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 32.0 bits (71), Expect = 1.7
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 50/229 (21%)
Query: 109 RQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNK 168
RQ+LD Y L G + SKI +L T+E + L + Y+ ++ S Y ++
Sbjct: 89 RQILDKSYYL-----GLLRSKISEL-------TTEVNKLQKGIEMYN--QENSVY--LSY 132
Query: 169 EDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVL 228
E R E + + +KEL ++ DY D++ N +
Sbjct: 133 EKRAETLAVE-----------------------IKELQGQLADYNMLV---DKLNTNTEM 166
Query: 229 QEVAAFIEADPVMVLNDDNT----IVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNC 284
+EV + + + ND T ++ T + E +E+ + + + D + +
Sbjct: 167 EEVMN--DYNMLKAQNDRETQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSF 224
Query: 285 NNQVKFSELTVDMFRMLQALEREPMNLASQ-MNKPGMQ-ESADKPTRRE 331
NQVK+ E+ ++LQ L+ L SQ M K ++ E A ++E
Sbjct: 225 ENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQE 273
>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 32.0 bits (71), Expect = 1.7
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 50/229 (21%)
Query: 109 RQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNK 168
RQ+LD Y L G + SKI +L T+E + L + Y+ ++ S Y ++
Sbjct: 89 RQILDKSYYL-----GLLRSKISEL-------TTEVNKLQKGIEMYN--QENSVY--LSY 132
Query: 169 EDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVL 228
E R E + + +KEL ++ DY D++ N +
Sbjct: 133 EKRAETLAVE-----------------------IKELQGQLADYNMLV---DKLNTNTEM 166
Query: 229 QEVAAFIEADPVMVLNDDNT----IVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNC 284
+EV + + + ND T ++ T + E +E+ + + + D + +
Sbjct: 167 EEVMN--DYNMLKAQNDRETQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSF 224
Query: 285 NNQVKFSELTVDMFRMLQALEREPMNLASQ-MNKPGMQ-ESADKPTRRE 331
NQVK+ E+ ++LQ L+ L SQ M K ++ E A ++E
Sbjct: 225 ENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQE 273
>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 32.0 bits (71), Expect = 1.7
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 50/229 (21%)
Query: 109 RQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNK 168
RQ+LD Y L G + SKI +L T+E + L + Y+ ++ S Y ++
Sbjct: 89 RQILDKSYYL-----GLLRSKISEL-------TTEVNKLQKGIEMYN--QENSVY--LSY 132
Query: 169 EDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVL 228
E R E + + +KEL ++ DY D++ N +
Sbjct: 133 EKRAETLAVE-----------------------IKELQGQLADYNMLV---DKLNTNTEM 166
Query: 229 QEVAAFIEADPVMVLNDDNT----IVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNC 284
+EV + + + ND T ++ T + E +E+ + + + D + +
Sbjct: 167 EEVMN--DYNMLKAQNDRETQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSF 224
Query: 285 NNQVKFSELTVDMFRMLQALEREPMNLASQ-MNKPGMQ-ESADKPTRRE 331
NQVK+ E+ ++LQ L+ L SQ M K ++ E A ++E
Sbjct: 225 ENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQE 273
>gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens]
Length = 2555
Score = 31.6 bits (70), Expect = 2.2
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 164 SQVNKEDRP--ELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQ 221
S+++ +D L + +L+ R + + KM+ + ++ K +S + YTHR + ++
Sbjct: 320 SRISGQDETIKNLEIFRLKMILRLLQISSFNGKMNALNEINKVISS-VSYYTHRHSNPEE 378
Query: 222 VEWNLVLQEVAAFIEADPVM--VLND 245
EW L + +A +I+ + ++ VL D
Sbjct: 379 EEW-LTAERMAEWIQQNNILSIVLQD 403
>gi|56676335 RAP1 interacting factor 1 [Homo sapiens]
Length = 2472
Score = 31.2 bits (69), Expect = 2.9
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 300 MLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYL--LYKPTFSQLYTFLAASFKEL 357
M+ ++ P N+ Q Q +D ++ P L L+K +Y+F SFKE
Sbjct: 763 MVDCIDFSPYNIKYQPKVKSPQRPSDWSKKKNEPLGKLTSLFKLIVKVIYSFHTLSFKEA 822
Query: 358 PANSVLLIYLSATGV 372
++++ I S TG+
Sbjct: 823 HSDTLFTIGNSITGI 837
>gi|4557287 angiotensinogen preproprotein [Homo sapiens]
Length = 485
Score = 30.8 bits (68), Expect = 3.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 285 NNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQE 322
N++++ E+ +F L+A EREP Q+NKP + E
Sbjct: 416 NDRIRVGEVLNSIFFELEADEREPTESTQQLNKPEVLE 453
>gi|145309311 ubiquitin specific protease 9, X-linked isoform 4
[Homo sapiens]
Length = 2554
Score = 30.8 bits (68), Expect = 3.8
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 168 KEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLV 227
+E L + +L+ R + + KM+ + ++ K +S + YTHR ++ EW L
Sbjct: 325 EETVKNLEIFRLKMILRLLQISSFNGKMNALNEVNKVISS-VSYYTHRHGNPEEEEW-LT 382
Query: 228 LQEVAAFIEADPVM--VLND 245
+ +A +I+ + ++ VL D
Sbjct: 383 AERMAEWIQQNNILSIVLRD 402
>gi|145309309 ubiquitin specific protease 9, X-linked isoform 3
[Homo sapiens]
Length = 2570
Score = 30.8 bits (68), Expect = 3.8
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 168 KEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLV 227
+E L + +L+ R + + KM+ + ++ K +S + YTHR ++ EW L
Sbjct: 325 EETVKNLEIFRLKMILRLLQISSFNGKMNALNEVNKVISS-VSYYTHRHGNPEEEEW-LT 382
Query: 228 LQEVAAFIEADPVM--VLND 245
+ +A +I+ + ++ VL D
Sbjct: 383 AERMAEWIQQNNILSIVLRD 402
>gi|144446030 lymphocyte antigen 75 [Homo sapiens]
Length = 1722
Score = 30.8 bits (68), Expect = 3.8
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 48 EDDIPQG-----------ERKTVTDFCYLLDKS--KQLFNGLRDLPQYGQKQWQSYFGRT 94
ED++P G E++ + D DKS K + GLRD+ G+ W + GR
Sbjct: 519 EDEVPFGTNCNLTITSRFEQEYLNDLMKKYDKSLRKYFWTGLRDVDSCGEYNWATVGGRR 578
Query: 95 FDVYTKLWKF 104
V W F
Sbjct: 579 RAVTFSNWNF 588
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3
[Homo sapiens]
Length = 1585
Score = 30.8 bits (68), Expect = 3.8
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 8 PQQPRSRLAPRLTGTVEKPPRKRRSRTEFALK-----------EIMSSGGAEDDIPQGER 56
P QP + AP + T ++PP +R + ++ EIMS GG+ + P R
Sbjct: 114 PSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGR 173
Query: 57 KTVT 60
T T
Sbjct: 174 PTST 177
>gi|71834870 Sad1 and UNC84 domain containing 1 [Homo sapiens]
Length = 357
Score = 30.0 bits (66), Expect = 6.4
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 130 IGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVN----KEDRPELVVKKLRYYARF 185
+G L + + T + ++ + R Y Q KE L + F
Sbjct: 61 VGLLNHQWLKETDVPQKSRQLYAIIAEYGSRLYKYQARLRMPKEQLELLKKESQNLENNF 120
Query: 186 IVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTE-DQVEWNLVLQEVAAFIEADPVMVLN 244
+ L+ ++DV+K L++++ D + D H +NT D VE +EV+ + + V+
Sbjct: 121 RQILFLIEQIDVLKALLRDMKDGM-DNNHNWNTHGDPVEDPDHTEEVSNLV--NYVLKKL 177
Query: 245 DDNTIVITSNRLAETGAPLLEQG 267
++ + + L GA ++E G
Sbjct: 178 REDQVEMADYALKSAGASIIEAG 200
>gi|71834868 Sad1 and UNC84 domain containing 1 [Homo sapiens]
Length = 357
Score = 30.0 bits (66), Expect = 6.4
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 130 IGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVN----KEDRPELVVKKLRYYARF 185
+G L + + T + ++ + R Y Q KE L + F
Sbjct: 61 VGLLNHQWLKETDVPQKSRQLYAIIAEYGSRLYKYQARLRMPKEQLELLKKESQNLENNF 120
Query: 186 IVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTE-DQVEWNLVLQEVAAFIEADPVMVLN 244
+ L+ ++DV+K L++++ D + D H +NT D VE +EV+ + + V+
Sbjct: 121 RQILFLIEQIDVLKALLRDMKDGM-DNNHNWNTHGDPVEDPDHTEEVSNLV--NYVLKKL 177
Query: 245 DDNTIVITSNRLAETGAPLLEQG 267
++ + + L GA ++E G
Sbjct: 178 REDQVEMADYALKSAGASIIEAG 200
>gi|45580742 dehydrodolichyl diphosphate synthase isoform a [Homo
sapiens]
Length = 334
Score = 30.0 bits (66), Expect = 6.4
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 274 SLADALIIGNCNNQVKFSELTVDMF---RMLQALEREPMNLASQMNKPGMQESADKPTRR 330
+L +A++ N+ V + DM+ R Q LER+ + Q+ + G+Q S D RR
Sbjct: 239 NLFEAILQFQMNHSV-LQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRR 297
Query: 331 ENPHK 335
HK
Sbjct: 298 TRLHK 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,182,020
Number of Sequences: 37866
Number of extensions: 973637
Number of successful extensions: 2406
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2400
Number of HSP's gapped (non-prelim): 18
length of query: 606
length of database: 18,247,518
effective HSP length: 108
effective length of query: 498
effective length of database: 14,157,990
effective search space: 7050679020
effective search space used: 7050679020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.