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Search of human proteins with 21687072
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21687072 transmembrane protein 170A [Homo sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21687072 transmembrane protein 170A [Homo sapiens] 286 3e-78
gi|154816172 transmembrane protein 170B [Homo sapiens] 117 3e-27
gi|239756685 PREDICTED: TLC domain containing 2 [Homo sapiens] 31 0.31
gi|239751182 PREDICTED: hypothetical protein [Homo sapiens] 31 0.31
gi|239745670 PREDICTED: TLC domain containing 2 [Homo sapiens] 31 0.31
gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens] 30 0.54
gi|53729325 nuclear receptor subfamily 6, group A, member 1 isof... 28 2.7
gi|53729327 nuclear receptor subfamily 6, group A, member 1 isof... 28 2.7
gi|13236497 5-hydroxytryptamine receptor 5A [Homo sapiens] 27 4.5
gi|170932505 neuromedin U receptor 2 [Homo sapiens] 27 5.9
gi|126131104 fibrocystin isoform 2 [Homo sapiens] 27 7.7
gi|126131102 fibrocystin isoform 1 [Homo sapiens] 27 7.7
gi|42822876 hypothetical protein LOC286343 [Homo sapiens] 27 7.7
>gi|21687072 transmembrane protein 170A [Homo sapiens]
Length = 144
Score = 286 bits (733), Expect = 3e-78
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MEREGSGGSGGSAGLLQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLF 60
MEREGSGGSGGSAGLLQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLF
Sbjct: 1 MEREGSGGSGGSAGLLQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLF 60
Query: 61 FHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFE 120
FHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFE
Sbjct: 61 FHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFE 120
Query: 121 ALTLGTGQTFCVLVVSFLRILATL 144
ALTLGTGQTFCVLVVSFLRILATL
Sbjct: 121 ALTLGTGQTFCVLVVSFLRILATL 144
>gi|154816172 transmembrane protein 170B [Homo sapiens]
Length = 132
Score = 117 bits (293), Expect = 3e-27
Identities = 66/142 (46%), Positives = 86/142 (60%), Gaps = 12/142 (8%)
Query: 4 EGSGGSGGSAGL-LQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLFFH 62
+ GG L +QQ+LSL +GT+ N T EMWY +FLWAL SSLF H
Sbjct: 2 KAEGGDHSMINLSVQQVLSLWA-----HGTVLRNLT------EMWYWIFLWALFSSLFVH 50
Query: 63 VPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFEAL 122
AG+L L+ H+ GR +SV + +G + +T ++TSAA+AG+YR AGK M P EAL
Sbjct: 51 GAAGVLMFVMLQRHRQGRVISVIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEAL 110
Query: 123 TLGTGQTFCVLVVSFLRILATL 144
G GQT L++SF RILATL
Sbjct: 111 VWGVGQTVLTLIISFSRILATL 132
>gi|239756685 PREDICTED: TLC domain containing 2 [Homo sapiens]
Length = 264
Score = 31.2 bits (69), Expect = 0.31
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 44 PEMWYGVFLWALVSSL--FFHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILT 101
P + + V WA +++L F VP G ++L+ R H + ++++ +G +G +T GI++
Sbjct: 158 PSLAFSVTSWASLATLALFRLVPLGWMSLWLFRQHHQ---VPLALVTLGGIGLVTVGIMS 214
>gi|239751182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 264
Score = 31.2 bits (69), Expect = 0.31
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 44 PEMWYGVFLWALVSSL--FFHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILT 101
P + + V WA +++L F VP G ++L+ R H + ++++ +G +G +T GI++
Sbjct: 158 PSLAFSVTSWASLATLALFRLVPLGWMSLWLFRQHHQ---VPLALVTLGGIGLVTVGIMS 214
>gi|239745670 PREDICTED: TLC domain containing 2 [Homo sapiens]
Length = 264
Score = 31.2 bits (69), Expect = 0.31
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 44 PEMWYGVFLWALVSSL--FFHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILT 101
P + + V WA +++L F VP G ++L+ R H + ++++ +G +G +T GI++
Sbjct: 158 PSLAFSVTSWASLATLALFRLVPLGWMSLWLFRQHHQ---VPLALVTLGGIGLVTVGIMS 214
>gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens]
Length = 1168
Score = 30.4 bits (67), Expect = 0.54
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 33 LCPNSTSLCSFPEMWYG-VFLWALVSSLFFHVPA-GLLAL 70
LC + CSFPE + G + L L SS+F H+ + G LA+
Sbjct: 802 LCEGTMPTCSFPEYFIGNMLLSLLASSVFLHISSIGKLAM 841
>gi|53729325 nuclear receptor subfamily 6, group A, member 1
isoform 1 [Homo sapiens]
Length = 480
Score = 28.1 bits (61), Expect = 2.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 1 MERE-----GSGGSGGSAGLLQQILSLKVVPRVG 29
MER+ G GG GGSAG L+ +L PR G
Sbjct: 1 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNG 34
>gi|53729327 nuclear receptor subfamily 6, group A, member 1
isoform 2 [Homo sapiens]
Length = 475
Score = 28.1 bits (61), Expect = 2.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 1 MERE-----GSGGSGGSAGLLQQILSLKVVPRVG 29
MER+ G GG GGSAG L+ +L PR G
Sbjct: 1 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNG 34
>gi|13236497 5-hydroxytryptamine receptor 5A [Homo sapiens]
Length = 357
Score = 27.3 bits (59), Expect = 4.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 41 CSFPEMWYGVFLWALVSSLFFH 62
C P +W +FLW S+ FF+
Sbjct: 313 CDIPAIWKSIFLWLGYSNSFFN 334
>gi|170932505 neuromedin U receptor 2 [Homo sapiens]
Length = 415
Score = 26.9 bits (58), Expect = 5.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 30 NGTLCPNSTSLCSFPEMWYGVFLWALVSSLFFHVPAGLLAL 70
NG+L P S + MW F+ + S LF+ +P ++++
Sbjct: 194 NGSLVPGSATCTVIKPMWIYNFIIQVTSFLFYLLPMTVISV 234
>gi|126131104 fibrocystin isoform 2 [Homo sapiens]
Length = 3396
Score = 26.6 bits (57), Expect = 7.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 14 GLLQQILSLK--VVPRVGNGTLCPNSTSLCSFPEMWYGV 50
G +Q IL +K + P + T P S S PE W GV
Sbjct: 2707 GQVQVILRVKEGMPPTISASTSAPESALKWSLPETWQGV 2745
>gi|126131102 fibrocystin isoform 1 [Homo sapiens]
Length = 4074
Score = 26.6 bits (57), Expect = 7.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 14 GLLQQILSLK--VVPRVGNGTLCPNSTSLCSFPEMWYGV 50
G +Q IL +K + P + T P S S PE W GV
Sbjct: 2707 GQVQVILRVKEGMPPTISASTSAPESALKWSLPETWQGV 2745
>gi|42822876 hypothetical protein LOC286343 [Homo sapiens]
Length = 228
Score = 26.6 bits (57), Expect = 7.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 15/43 (34%)
Query: 2 EREGSGGSGGSAGLLQQILSLKVVPRVGNGTLCPNSTSLCSFP 44
+R+ GGSGG G G C +S+S CSFP
Sbjct: 39 DRDPCGGSGGGGG---------------GGGGCSSSSSYCSFP 66
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,167,546
Number of Sequences: 37866
Number of extensions: 206136
Number of successful extensions: 853
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 13
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.