Search of human proteins with 21687001

Search of human proteins with 21687001

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21687001 DNA-damage-inducible transcript 4-like [Homo
sapiens]
         (193 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21687001 DNA-damage-inducible transcript 4-like [Homo sapiens]     390   e-109
gi|9506687 RTP801 [Homo sapiens]                                      106   1e-23
gi|74275348 adenosylmethionine decarboxylase 1 isoform 2 [Homo s...    31   0.57 
gi|74275346 adenosylmethionine decarboxylase 1 isoform 1 precurs...    31   0.57 
gi|31791053 zinc finger protein 804B [Homo sapiens]                    31   0.75 
gi|110347427 ubiquitin specific protease 34 [Homo sapiens]             28   4.8  
gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo sa...    28   6.3  
gi|195947391 RAD51 associated protein 1 isoform a [Homo sapiens]       28   6.3  
gi|24307961 hypothetical protein LOC9675 [Homo sapiens]                27   8.3  
gi|156546890 WW and C2 domain containing 2 [Homo sapiens]              27   8.3  

>gi|21687001 DNA-damage-inducible transcript 4-like [Homo sapiens]
          Length = 193

 Score =  390 bits (1002), Expect = e-109
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MVATGSLSSKNPASISELLDCGYHPESLLSDFDYWDYVVPEPNLNEVIFEESTCQNLVKM 60
           MVATGSLSSKNPASISELLDCGYHPESLLSDFDYWDYVVPEPNLNEVIFEESTCQNLVKM
Sbjct: 1   MVATGSLSSKNPASISELLDCGYHPESLLSDFDYWDYVVPEPNLNEVIFEESTCQNLVKM 60

Query: 61  LENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKK 120
           LENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKK
Sbjct: 61  LENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKK 120

Query: 121 LDRIVCDSSVVPTFELTLVFKQENCSWTSFRDFFFSRGRFSSGFRRTLILSSGFRLVKKK 180
           LDRIVCDSSVVPTFELTLVFKQENCSWTSFRDFFFSRGRFSSGFRRTLILSSGFRLVKKK
Sbjct: 121 LDRIVCDSSVVPTFELTLVFKQENCSWTSFRDFFFSRGRFSSGFRRTLILSSGFRLVKKK 180

Query: 181 LYSLIGTTVIEGS 193
           LYSLIGTTVIEGS
Sbjct: 181 LYSLIGTTVIEGS 193


>gi|9506687 RTP801 [Homo sapiens]
          Length = 232

 Score =  106 bits (264), Expect = 1e-23
 Identities = 63/180 (35%), Positives = 107/180 (59%), Gaps = 6/180 (3%)

Query: 6   SLSSKNPASISELLDCGYHPESLLSDFDYWDYV-VPEPNLNEVIFEESTCQNLVKMLENC 64
           SL S +  S+    + G+ PE    D  Y D V +P+  L     +E  C NL+++L+  
Sbjct: 48  SLESSDCESLDSS-NSGFGPEE---DTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQES 103

Query: 65  LSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKKLDRI 124
           L++++      +++L+P +L  ++ +++LRL+ +EPCGLRG ++ V +E    C  + ++
Sbjct: 104 LAQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQL 163

Query: 125 VCDSSVVPTFELTLVFKQENCSWTSFRDFFFS-RGRFSSGFRRTLILSSGFRLVKKKLYS 183
             D S+VPTF+LTLV + ++  W   +  F S    F  GF ++L LS+GFR++KKKLYS
Sbjct: 164 ALDPSLVPTFQLTLVLRLDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYS 223


>gi|74275348 adenosylmethionine decarboxylase 1 isoform 2 [Homo
           sapiens]
          Length = 186

 Score = 31.2 bits (69), Expect = 0.57
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 21  CGYHPESLLSDFDYWD-YVVPEPNLNEVIFEESTCQ 55
           CGY    + SD  YW  ++ PEP  + V FE +  Q
Sbjct: 78  CGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQ 113


>gi|74275346 adenosylmethionine decarboxylase 1 isoform 1 precursor
           [Homo sapiens]
          Length = 334

 Score = 31.2 bits (69), Expect = 0.57
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 21  CGYHPESLLSDFDYWD-YVVPEPNLNEVIFEESTCQ 55
           CGY    + SD  YW  ++ PEP  + V FE +  Q
Sbjct: 226 CGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQ 261


>gi|31791053 zinc finger protein 804B [Homo sapiens]
          Length = 1349

 Score = 30.8 bits (68), Expect = 0.75
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 50  EESTCQNLVKMLENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPCGLRGCV-M 108
           E+ T   L   LENC++   Q     S   +      RI++ +   SS EP   +  V +
Sbjct: 342 EKETRNTLKNTLENCVNHPCQANASFSPPNIYNHSDARISECLDEFSSLEPSEQKSTVHL 401

Query: 109 HVNLEIENVCKKLDR 123
           + N  IEN  K LD+
Sbjct: 402 NPNSRIENREKSLDK 416


>gi|110347427 ubiquitin specific protease 34 [Homo sapiens]
          Length = 3546

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 15/122 (12%)

Query: 82   EKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKKLDRIVCDSSVVPTFELTLVFK 141
            E L +   +D L   +   C    C   V  E     KKL RI+  +++  TF +  + K
Sbjct: 2043 ESLDEVTIKDTLEGDNMYTCS--HCGKKVRAEKRACFKKLPRILSFNTMRYTFNMVTMMK 2100

Query: 142  QENCSWTSF----------RDFFFSRGRFSSGFRRTLILSSGFRLVKKKLYSLIGTTVIE 191
            ++  +  SF           DF   +     GF+    +S   +  +   Y LIG TV  
Sbjct: 2101 EKVNTHFSFPLRLDMTPYTEDFLMGKSERKEGFKE---VSDHSKDSESYEYDLIGVTVHT 2157

Query: 192  GS 193
            G+
Sbjct: 2158 GT 2159


>gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo
           sapiens]
          Length = 669

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 21/82 (25%), Positives = 36/82 (43%)

Query: 42  PNLNEVIFEESTCQNLVKMLENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPC 101
           P L E  +E       + +L+  L +S+   +     LV  ++  R A+  LR+S     
Sbjct: 434 PRLEETKWEVCQKSGEISLLKQQLKESQAELVQKGSELVALRVALREARATLRVSEGRAR 493

Query: 102 GLRGCVMHVNLEIENVCKKLDR 123
           GL+       LE+E   ++L R
Sbjct: 494 GLQEAARARELELEACSQELQR 515


>gi|195947391 RAD51 associated protein 1 isoform a [Homo sapiens]
          Length = 352

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 40  PEPNLNEVIFEESTCQNLV--KMLENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSS 97
           P+PNLN +  EE   Q     K L         + + C+K+ + +KL QR  +  L LS 
Sbjct: 48  PKPNLNNLRKEEIPVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSV 107

Query: 98  TE 99
            E
Sbjct: 108 KE 109


>gi|24307961 hypothetical protein LOC9675 [Homo sapiens]
          Length = 1089

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 57  LVKMLENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIEN 116
           L+K +  C+S     K+    V + E L  + +Q ++  +      L G V   + EI+ 
Sbjct: 290 LIKKIIECVSVHPHWKVRLELVELVEDLLLKCSQSLVECAGPLLKALVGLVNDESPEIQA 349

Query: 117 VCKKLDRIVCDSSVV 131
            C K+ R   D  VV
Sbjct: 350 QCNKVLRHFADQKVV 364


>gi|156546890 WW and C2 domain containing 2 [Homo sapiens]
          Length = 1192

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 41   EPNLNEVIFEESTCQNLVKMLENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRL 95
            E +L   + E+   Q L+K  E    +SK+ +    + L  EKL +++++DV RL
Sbjct: 1105 ETDLPPGVLEDERFQRLLKQAEKQAEQSKEEQ---KQGLNAEKLMRQVSKDVCRL 1156


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,029,574
Number of Sequences: 37866
Number of extensions: 284511
Number of successful extensions: 606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 10
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.