Search of human proteins with 21489959

Search of human proteins with 21489959

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21489959 immunoglobulin J chain [Homo sapiens]
         (159 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21489959 immunoglobulin J chain [Homo sapiens]                     329   5e-91
gi|58218986 thymocyte selection pathway associated [Homo sapiens]      34   0.060
gi|157266317 ataxia telangiectasia and Rad3 related protein [Hom...    28   2.5  
gi|169218238 PREDICTED: similar to ataxia telangiectasia and Rad...    28   2.5  
gi|187960100 ubiquitin protein ligase E3C [Homo sapiens]               28   2.5  
gi|110349719 titin isoform N2-A [Homo sapiens]                         28   3.3  
gi|15718698 caspase 7 isoform delta [Homo sapiens]                     27   9.6  
gi|15718700 caspase 7 isoform alpha [Homo sapiens]                     27   9.6  
gi|4502581 caspase 7 isoform alpha precursor [Homo sapiens]            27   9.6  
gi|14249398 PHD-finger 5A [Homo sapiens]                               27   9.6  
gi|90403581 meiosis defective 1 [Homo sapiens]                         27   9.6  

>gi|21489959 immunoglobulin J chain [Homo sapiens]
          Length = 159

 Score =  329 bits (844), Expect = 5e-91
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI 60
           MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
Sbjct: 1   MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI 60

Query: 61  RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT 120
           RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
Sbjct: 61  RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT 120

Query: 121 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD 159
           ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
Sbjct: 121 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD 159


>gi|58218986 thymocyte selection pathway associated [Homo sapiens]
          Length = 641

 Score = 33.9 bits (76), Expect = 0.060
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 51  PNEDIVERNIRIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQ 110
           P    VE     ++ L     +  P SP R     H  D+ KK  P +  LD++++  +Q
Sbjct: 558 PKHPSVEETKLTLLTLAEERTVDLPKSPKR-----HHVDITKKLHPNQAGLDSKVLIGSQ 612

Query: 111 SNICDED 117
           +++ DE+
Sbjct: 613 NDLVDEE 619


>gi|157266317 ataxia telangiectasia and Rad3 related protein [Homo
           sapiens]
          Length = 2644

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 77  SPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDE 116
           SP++  F+ +L  LCK  D  E E D + V  T  N+ ++
Sbjct: 776 SPVKLAFIDNLHHLCKHLDFREDETDVKAVLGTLLNLMED 815


>gi|169218238 PREDICTED: similar to ataxia telangiectasia and Rad3
           related protein, partial [Homo sapiens]
          Length = 2105

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 77  SPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDE 116
           SP++  F+ +L  LCK  D  E E D + V  T  N+ ++
Sbjct: 534 SPVKLAFIDNLHHLCKHLDFREDETDVKAVLGTLLNLMED 573


>gi|187960100 ubiquitin protein ligase E3C [Homo sapiens]
          Length = 1083

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 70  ENISDPTSPLRTRF-VYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSATETCYTYDR 128
           E    P+SP   R  V ++++ C K      +LD +  T T  N+   DSA+E  +T   
Sbjct: 373 EEADKPSSPEDGRLSVSYITEECLK------KLDTKQQTNTLLNLVWRDSASEEVFTTMA 426

Query: 129 NKCYTAVV 136
           + C+T +V
Sbjct: 427 SVCHTLMV 434


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 22/111 (19%), Positives = 51/111 (45%), Gaps = 25/111 (22%)

Query: 49   EDPNEDIVERNIRIIVPLNNRENISDPTS--PLRTRFVY----------------HLSDL 90
            E+P + + E  IRI +    +E +++P +  P++ + V                  + ++
Sbjct: 9841 EEPKK-VFEEKIRISITKREKEQVTEPAAKVPMKPKRVVAEEKVPVPRKEVAPPVRVPEV 9899

Query: 91   CKKCDPTEVELDNQIVTATQSNICDEDSATETCYTYDRNKCYT--AVVPLV 139
             K+ +P EV  + ++VT  +  + +E+      Y ++  +  T   VVP++
Sbjct: 9900 PKELEPEEVAFEEEVVTHVEEYLVEEEEE----YIHEEEEFITEEEVVPVI 9946


>gi|15718698 caspase 7 isoform delta [Homo sapiens]
          Length = 336

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 29  VLVDNKCKCARITSRIIRSSEDPNEDIVERNIRIIVPLNNRENI---SDPTSPLRTRFVY 85
           V+V N C CA++   + ++SE+ + +        I+  +  EN+    D  +P++    +
Sbjct: 141 VIVYNDCSCAKMQDLLKKASEEDHTNAA--CFACILLSHGEENVIYGKDGVTPIKDLTAH 198

Query: 86  HLSDLCK 92
              D CK
Sbjct: 199 FRGDRCK 205


>gi|15718700 caspase 7 isoform alpha [Homo sapiens]
          Length = 303

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 29  VLVDNKCKCARITSRIIRSSEDPNEDIVERNIRIIVPLNNRENI---SDPTSPLRTRFVY 85
           V+V N C CA++   + ++SE+ + +        I+  +  EN+    D  +P++    +
Sbjct: 108 VIVYNDCSCAKMQDLLKKASEEDHTNAA--CFACILLSHGEENVIYGKDGVTPIKDLTAH 165

Query: 86  HLSDLCK 92
              D CK
Sbjct: 166 FRGDRCK 172


>gi|4502581 caspase 7 isoform alpha precursor [Homo sapiens]
          Length = 303

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 29  VLVDNKCKCARITSRIIRSSEDPNEDIVERNIRIIVPLNNRENI---SDPTSPLRTRFVY 85
           V+V N C CA++   + ++SE+ + +        I+  +  EN+    D  +P++    +
Sbjct: 108 VIVYNDCSCAKMQDLLKKASEEDHTNAA--CFACILLSHGEENVIYGKDGVTPIKDLTAH 165

Query: 86  HLSDLCK 92
              D CK
Sbjct: 166 FRGDRCK 172


>gi|14249398 PHD-finger 5A [Homo sapiens]
          Length = 110

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 90  LCKKCDPTEVELDNQIVTATQSNICDE 116
           LC+KCD   V  D+ +   T   ICDE
Sbjct: 22  LCEKCDGKCVICDSYVRPCTLVRICDE 48


>gi|90403581 meiosis defective 1 [Homo sapiens]
          Length = 1274

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 63  IVPLNNRENISDPT-SPLRTRFVYHLSDLCKKCDPTEVEL 101
           ++ L    N+S+     +  + ++ +S LC KC PT+V++
Sbjct: 914 LLSLMQLRNVSEQELDSVAMKLLHQVSKLCGKCSPTDVDI 953


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,992,229
Number of Sequences: 37866
Number of extensions: 234959
Number of successful extensions: 510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 12
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.