Search of human proteins with 113431083

Search of human proteins with 113431083

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113431083 PREDICTED: similar to Vac14 homolog [Homo sapiens]
         (218 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113431083 PREDICTED: similar to Vac14 homolog [Homo sapiens]       441   e-124
gi|39780552 Vac14 homolog [Homo sapiens]                              355   2e-98
gi|239750069 PREDICTED: hypothetical protein XP_002347286 [Homo ...    31   0.93 
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ...    30   1.2  
gi|239756877 PREDICTED: hypothetical protein [Homo sapiens]            30   1.6  
gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo ...    30   1.6  
gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo ...    30   1.6  
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b...    29   3.5  
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a...    29   3.5  
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b...    29   3.5  
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a...    29   3.5  
gi|16554564 caspase recruitment domain family, member 6 [Homo sa...    29   3.5  
gi|239752100 PREDICTED: hypothetical protein [Homo sapiens]            28   6.0  
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          28   7.9  

>gi|113431083 PREDICTED: similar to Vac14 homolog [Homo sapiens]
          Length = 218

 Score =  441 bits (1134), Expect = e-124
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MRGEMKRPSLVRPPPPPCRRVQPEQCKSLTSGASRRRSGAVNRQLCLLLNAENIFHSMAD 60
           MRGEMKRPSLVRPPPPPCRRVQPEQCKSLTSGASRRRSGAVNRQLCLLLNAENIFHSMAD
Sbjct: 1   MRGEMKRPSLVRPPPPPCRRVQPEQCKSLTSGASRRRSGAVNRQLCLLLNAENIFHSMAD 60

Query: 61  ILLREEDLKFASTMVHALNTILLTSTELFQLRNQLKDLKTLESQNLFCCLYRSWCHNPVT 120
           ILLREEDLKFASTMVHALNTILLTSTELFQLRNQLKDLKTLESQNLFCCLYRSWCHNPVT
Sbjct: 61  ILLREEDLKFASTMVHALNTILLTSTELFQLRNQLKDLKTLESQNLFCCLYRSWCHNPVT 120

Query: 121 TVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDKLVQLIECPIFTYLRLQLLDVKNNP 180
           TVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDKLVQLIECPIFTYLRLQLLDVKNNP
Sbjct: 121 TVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDKLVQLIECPIFTYLRLQLLDVKNNP 180

Query: 181 YLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQTE 218
           YLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQTE
Sbjct: 181 YLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQTE 218


>gi|39780552 Vac14 homolog [Homo sapiens]
          Length = 782

 Score =  355 bits (911), Expect = 2e-98
 Identities = 177/182 (97%), Positives = 178/182 (97%)

Query: 37  RSGAVNRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELFQLRNQLK 96
           R   + RQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELFQLRNQLK
Sbjct: 548 RGPFIIRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELFQLRNQLK 607

Query: 97  DLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDK 156
           DLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDK
Sbjct: 608 DLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDK 667

Query: 157 LVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQ 216
           LVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQ
Sbjct: 668 LVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQ 727

Query: 217 TE 218
           TE
Sbjct: 728 TE 729


>gi|239750069 PREDICTED: hypothetical protein XP_002347286 [Homo
          sapiens]
          Length = 115

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 4  EMKRPSLVRPPPPPCRRVQPEQCKSLTSGASRRRSGAVNRQ 44
          +M  P+L +P P PC    PE   S++S  SRR +G  N +
Sbjct: 37 KMAAPALTKPGPAPC---NPEIWISVSSRLSRRHTGGHNEE 74


>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
           sapiens]
          Length = 1835

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 49  LNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELFQLRNQ--LKDLKTLESQNL 106
           L  + + +  A++LL   D K    M H +   L++     ++R    L +L   E   +
Sbjct: 330 LGLDTLGNIAAELLLDPVDFKTTHLMFHTVTKCLMSRDRFLKMRGMEILGNLCKAEDNGV 389

Query: 107 FCCLY-------RSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDKLVQ 159
             C Y          CH  +  V L   T    +   ++ + GD+  T   +A+V+K + 
Sbjct: 390 LICEYVDQDSYREIICHLTLPDVLLVISTLEVLY---MLTEMGDVACTK--IAKVEKSID 444

Query: 160 LIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLS 203
           ++ C         L+ +    +   AL  + ++   SS+ Q+LS
Sbjct: 445 MLVC---------LVSMDIQMFGPDALAAVKLIEHPSSSHQMLS 479


>gi|239756877 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 12 RPPPPPCRRVQPEQCKSLTSGASRRRSGAVNRQ 44
          R P PP  R  P   +S   G+SRRRSG   R+
Sbjct: 24 RGPSPPRTRGTPRSAQSSHPGSSRRRSGTRRRR 56


>gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo
          sapiens]
          Length = 140

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 12 RPPPPPCRRVQPEQCKSLTSGASRRRSGAVNRQ 44
          R P PP  R  P   +S   G+SRRRSG   R+
Sbjct: 24 RGPSPPRTRGTPRSAQSSHPGSSRRRSGTRRRR 56


>gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo
          sapiens]
          Length = 140

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 12 RPPPPPCRRVQPEQCKSLTSGASRRRSGAVNRQ 44
          R P PP  R  P   +S   G+SRRRSG   R+
Sbjct: 24 RGPSPPRTRGTPRSAQSSHPGSSRRRSGTRRRR 56


>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 8   PSLVRPPPPPCRRVQPEQCKSLTSGASRRRSGAVN 42
           P+ V PPPP  R V P + + ++   SRR     N
Sbjct: 127 PARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN 161


>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 8   PSLVRPPPPPCRRVQPEQCKSLTSGASRRRSGAVN 42
           P+ V PPPP  R V P + + ++   SRR     N
Sbjct: 140 PARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN 174


>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 8   PSLVRPPPPPCRRVQPEQCKSLTSGASRRRSGAVN 42
           P+ V PPPP  R V P + + ++   SRR     N
Sbjct: 127 PARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN 161


>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 8   PSLVRPPPPPCRRVQPEQCKSLTSGASRRRSGAVN 42
           P+ V PPPP  R V P + + ++   SRR     N
Sbjct: 140 PARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN 174


>gi|16554564 caspase recruitment domain family, member 6 [Homo
            sapiens]
          Length = 1037

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 7    RPSLVRPPPPPCRRVQPEQCKSLTSGASRRRSG 39
            +PS  RPP P      P Q K+  S A ++R G
Sbjct: 1003 KPSQPRPPQPKSSSTNPSQAKAHHSKAGQKRGG 1035


>gi|239752100 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 312

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 9  SLVRPPPPPCRRVQPEQCKSLTSG 32
          S  +PPPPP   + P  C+SL SG
Sbjct: 12 SQAQPPPPP--HISPPSCQSLPSG 33


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 161  IECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQTE 218
            +E PIF+ L +Q + ++  P  +    G +  LP   A QL  H+L    NP LLQ +
Sbjct: 2092 MELPIFSPLMMQTMPLQTLPAQLPPQLGPVEPLPADLA-QLYQHQL----NPTLLQQQ 2144


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,527,477
Number of Sequences: 37866
Number of extensions: 344208
Number of successful extensions: 2268
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2254
Number of HSP's gapped (non-prelim): 17
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.