Search of human proteins with 209413763

Search of human proteins with 209413763

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|209413763 hypothetical protein LOC11094 isoform b [Homo
sapiens]
         (130 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209413763 hypothetical protein LOC11094 isoform b [Homo sapiens]   260   2e-70
gi|8922116 hypothetical protein LOC11094 isoform a [Homo sapiens]     238   8e-64
gi|40217833 G protein-coupled receptor family C, group 5, member...    34   0.029
gi|40217831 G protein-coupled receptor family C, group 5, member...    34   0.029
gi|57165366 G4 protein [Homo sapiens]                                  30   0.71 
gi|221316741 N-acetyltransferase 10 isoform b [Homo sapiens]           28   2.1  
gi|221316723 N-acetyltransferase 10 isoform a [Homo sapiens]           28   2.1  
gi|29789379 sphingomyelin synthase 1 [Homo sapiens]                    28   2.1  
gi|68226422 Yip1 domain family, member 5 [Homo sapiens]                28   2.7  
gi|32401427 Yip1 domain family, member 5 [Homo sapiens]                28   2.7  
gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens]        27   6.0  
gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens]        27   6.0  
gi|155723000 mixed lineage kinase 4 [Homo sapiens]                     26   7.8  
gi|149363674 hypothetical protein LOC25758 [Homo sapiens]              26   7.8  

>gi|209413763 hypothetical protein LOC11094 isoform b [Homo sapiens]
          Length = 130

 Score =  260 bits (665), Expect = 2e-70
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA 60
           MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
Sbjct: 1   MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA 60

Query: 61  GVWMMMAVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEE 120
           GVWMMMAVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEE
Sbjct: 61  GVWMMMAVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEE 120

Query: 121 KLAETLEGEL 130
           KLAETLEGEL
Sbjct: 121 KLAETLEGEL 130


>gi|8922116 hypothetical protein LOC11094 isoform a [Homo sapiens]
          Length = 172

 Score =  238 bits (608), Expect = 8e-64
 Identities = 129/172 (75%), Positives = 130/172 (75%), Gaps = 42/172 (24%)

Query: 1   MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA 60
           MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
Sbjct: 1   MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA 60

Query: 61  GVWMM------------------------------------------MAVVPIVISLTLT 78
           GVWM+                                          MAVVPIVISLTLT
Sbjct: 61  GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT 120

Query: 79  TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL 130
           TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
Sbjct: 121 TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL 172


>gi|40217833 G protein-coupled receptor family C, group 5, member C
           isoform b [Homo sapiens]
          Length = 453

 Score = 34.3 bits (77), Expect = 0.029
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 8   PGASASS-APPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAAGVWMMM 66
           PGA A    PP   +G+   Y  LC  SG  G V  A++G    +T   L I     +++
Sbjct: 31  PGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGA-GIVTTFVLTI-----ILV 84

Query: 67  AVVPIVISLTLTTLLGNAIAFATGVL 92
           A +P V      +LLG  + F  G L
Sbjct: 85  ASLPFVQDTKKRSLLGTQVFFLLGTL 110


>gi|40217831 G protein-coupled receptor family C, group 5, member C
           isoform a [Homo sapiens]
          Length = 486

 Score = 34.3 bits (77), Expect = 0.029
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 8   PGASASS-APPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAAGVWMMM 66
           PGA A    PP   +G+   Y  LC  SG  G V  A++G    +T   L I     +++
Sbjct: 64  PGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGA-GIVTTFVLTI-----ILV 117

Query: 67  AVVPIVISLTLTTLLGNAIAFATGVL 92
           A +P V      +LLG  + F  G L
Sbjct: 118 ASLPFVQDTKKRSLLGTQVFFLLGTL 143


>gi|57165366 G4 protein [Homo sapiens]
          Length = 294

 Score = 29.6 bits (65), Expect = 0.71
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 14/106 (13%)

Query: 1   MSSSGG--APGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCI------T 52
           +S  GG   PG  A    P + E +  W R      G  GA S  + G   C+      T
Sbjct: 130 VSPEGGLSVPGPGAPLEKPGRREKLLGWLR------GEPGAPSRYLGGPEECLQISTNLT 183

Query: 53  IHPLNIAAGVWMMMAVVPIVISLTLTTLLGNAIAFATGVLYGLSAL 98
           +H L + A   + +   P+  +L    L G    +  G+L  L+AL
Sbjct: 184 LHLLELLASALLALCSRPLRAALDTLGLRGPLGLWLHGLLSFLAAL 229


>gi|221316741 N-acetyltransferase 10 isoform b [Homo sapiens]
          Length = 953

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 67  AVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETL 126
           A +P+ +   + +LLG  + F    + G    G+   ++S   IQQ RQQ+ + +++ T 
Sbjct: 319 AAIPLPL---VKSLLGPYLVFMASTINGYEGTGR---SLSLKLIQQLRQQSAQSQVSTTA 372

Query: 127 EGE 129
           E +
Sbjct: 373 ENK 375


>gi|221316723 N-acetyltransferase 10 isoform a [Homo sapiens]
          Length = 1025

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 67  AVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETL 126
           A +P+ +   + +LLG  + F    + G    G+   ++S   IQQ RQQ+ + +++ T 
Sbjct: 391 AAIPLPL---VKSLLGPYLVFMASTINGYEGTGR---SLSLKLIQQLRQQSAQSQVSTTA 444

Query: 127 EGE 129
           E +
Sbjct: 445 ENK 447


>gi|29789379 sphingomyelin synthase 1 [Homo sapiens]
          Length = 413

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 25  WWYRWLCRLSGVLG 38
           WWY W+C L  V+G
Sbjct: 305 WWYHWICWLLSVVG 318


>gi|68226422 Yip1 domain family, member 5 [Homo sapiens]
          Length = 257

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 53  IHPLNIAAGVWMMMAVV--PIVISLTL--TTLLGNAIAFATGVLYGLSALGKKG 102
           +HPL +A G  M    +  P+V  L    T LL   I F  G +YG+SA+G  G
Sbjct: 111 LHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQF--GYVYGISAIGCLG 162


>gi|32401427 Yip1 domain family, member 5 [Homo sapiens]
          Length = 257

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 53  IHPLNIAAGVWMMMAVV--PIVISLTL--TTLLGNAIAFATGVLYGLSALGKKG 102
           +HPL +A G  M    +  P+V  L    T LL   I F  G +YG+SA+G  G
Sbjct: 111 LHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQF--GYVYGISAIGCLG 162


>gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens]
          Length = 1119

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 75  LTLTTLLGNAIAFATGVL-YGLSALGKKGDAISYARIQQQRQQADEEKLAETL 126
           LT  +   + IA   G   YG + LG +     Y R++ QR++ +E +L  TL
Sbjct: 492 LTYISSSPDEIALVKGAKRYGFTFLGNRN---GYMRVENQRKEIEEYELLHTL 541


>gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens]
          Length = 1132

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 75  LTLTTLLGNAIAFATGVL-YGLSALGKKGDAISYARIQQQRQQADEEKLAETL 126
           LT  +   + IA   G   YG + LG +     Y R++ QR++ +E +L  TL
Sbjct: 492 LTYISSSPDEIALVKGAKRYGFTFLGNRN---GYMRVENQRKEIEEYELLHTL 541


>gi|155723000 mixed lineage kinase 4 [Homo sapiens]
          Length = 1036

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 11/15 (73%), Positives = 14/15 (93%)

Query: 1  MSSSGGAPGASASSA 15
          +SS+GGAPG SASS+
Sbjct: 14 VSSAGGAPGGSASSS 28


>gi|149363674 hypothetical protein LOC25758 [Homo sapiens]
          Length = 1855

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 20/70 (28%), Positives = 28/70 (40%)

Query: 58   IAAGVWMMMAVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQA 117
            IAA +  +  V  I+I +T      N   F    +  L    K      YA+    +Q A
Sbjct: 1189 IAAVLAPIAVVTVIIIIITAVLCRKNKNDFKPDTMINLPQRAKPVQGFDYAKQHLGQQGA 1248

Query: 118  DEEKLAETLE 127
            DEE +  T E
Sbjct: 1249 DEEVIPVTQE 1258


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,924,550
Number of Sequences: 37866
Number of extensions: 182771
Number of successful extensions: 725
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 15
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.