Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C9orf7 Sequence: fasta or formatted (130aa) NCBI GI: 209413763
Description:

hypothetical protein LOC11094 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {172aa} hypothetical protein LOC11094 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         18           2
 C cysteine            2.3          3           1
 D aspartate           1.5          2           1
 E glutamate           5.4          7           2
 F phenylalanine       1.5          2           1
 G glycine            10.8         14           2
 H histidine           0.8          1           1
 I isoleucine          6.9          9           1
 K lysine              2.3          3           2
 L leucine            11.5         15           2
 M methionine          3.8          5           3
 N asparagine          2.3          3           1
 P proline             3.8          5           2
 Q glutamine           4.6          6           3
 R arginine            3.1          4           1
 S serine              9.2         12           3
 T threonine           5.4          7           2
 V valine              5.4          7           2
 W tryptophan          3.1          4           2
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC11094 isoform b 
C9orf7                0.906   hypothetical protein LOC11094 isoform a 
GPRC5C                0.038   G protein-coupled receptor family C, group 5, member...
GPRC5C                0.038   G protein-coupled receptor family C, group 5, member...
C6orf47               0.021   G4 protein 
NAT10                 0.013   N-acetyltransferase 10 isoform b 
NAT10                 0.013   N-acetyltransferase 10 isoform a 
SGMS1                 0.013   sphingomyelin synthase 1 
YIPF5                 0.013   Yip1 domain family, member 5 
YIPF5                 0.013   Yip1 domain family, member 5 
ATP11C                0.009   ATPase, class VI, type 11C isoform b 
ATP11C                0.009   ATPase, class VI, type 11C isoform a 
KIAA1804              0.004   mixed lineage kinase 4 
C11orf41              0.004   hypothetical protein LOC25758 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press