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Search of human proteins with 209364530
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209364530 nei like 2 isoform c [Homo sapiens]
(216 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209364530 nei like 2 isoform c [Homo sapiens] 452 e-127
gi|209364528 nei like 2 isoform b [Homo sapiens] 360 e-100
gi|209364526 nei like 2 isoform a [Homo sapiens] 360 e-100
gi|21450800 nei like 2 isoform a [Homo sapiens] 360 e-100
gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens] 59 3e-09
gi|205360991 nei endonuclease VIII-like 1 [Homo sapiens] 44 1e-04
gi|148922852 general transcription factor IIH, polypeptide 2C [H... 29 2.7
gi|148922900 general transcription factor IIH, polypeptide 2B [H... 29 2.7
gi|6681762 general transcription factor IIH, polypeptide 2, 44kD... 29 2.7
gi|109809737 general transcription factor IIH, polypeptide 2D [H... 29 2.7
gi|13124883 HsKin17 protein [Homo sapiens] 29 2.7
gi|28212272 hypothetical protein LOC161424 [Homo sapiens] 28 7.8
gi|206597487 solute carrier family 5 (sodium/glucose cotransport... 28 7.8
gi|206597483 solute carrier family 5 (sodium/glucose cotransport... 28 7.8
gi|50658079 tubulin tyrosine ligase-like family, member 5 [Homo ... 28 7.8
>gi|209364530 nei like 2 isoform c [Homo sapiens]
Length = 216
Score = 452 bits (1163), Expect = e-127
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVRLVLHFGGGGFLA 60
MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVRLVLHFGGGGFLA
Sbjct: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVRLVLHFGGGGFLA 60
Query: 61 FYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNE 120
FYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNE
Sbjct: 61 FYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNE 120
Query: 121 ALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQ 180
ALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQ
Sbjct: 121 ALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQ 180
Query: 181 VMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 216
VMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 181 VMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 216
>gi|209364528 nei like 2 isoform b [Homo sapiens]
Length = 271
Score = 360 bits (923), Expect = e-100
Identities = 170/174 (97%), Positives = 171/174 (98%)
Query: 43 QDTQVRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 102
+D RLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY
Sbjct: 98 RDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 157
Query: 103 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 162
TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG
Sbjct: 158 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 217
Query: 163 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 216
RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 218 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 271
>gi|209364526 nei like 2 isoform a [Homo sapiens]
Length = 332
Score = 360 bits (923), Expect = e-100
Identities = 170/174 (97%), Positives = 171/174 (98%)
Query: 43 QDTQVRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 102
+D RLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY
Sbjct: 159 RDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 218
Query: 103 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 162
TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG
Sbjct: 219 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 278
Query: 163 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 216
RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 279 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
Score = 99.0 bits (245), Expect = 3e-21
Identities = 50/56 (89%), Positives = 51/56 (91%), Gaps = 3/56 (5%)
Query: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQV---RLVLHF 53
MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQV +L L F
Sbjct: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRF 56
>gi|21450800 nei like 2 isoform a [Homo sapiens]
Length = 332
Score = 360 bits (923), Expect = e-100
Identities = 170/174 (97%), Positives = 171/174 (98%)
Query: 43 QDTQVRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 102
+D RLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY
Sbjct: 159 RDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 218
Query: 103 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 162
TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG
Sbjct: 219 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 278
Query: 163 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 216
RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 279 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
Score = 99.0 bits (245), Expect = 3e-21
Identities = 50/56 (89%), Positives = 51/56 (91%), Gaps = 3/56 (5%)
Query: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQV---RLVLHF 53
MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQV +L L F
Sbjct: 1 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRF 56
>gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens]
Length = 605
Score = 58.9 bits (141), Expect = 3e-09
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 104 LLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG- 162
L+DQ G+GNIIKNEAL+ +G+HP L+ + L+ + +FS + + + G
Sbjct: 181 LMDQNVLPGVGNIIKNEALFDSGLHPAVKVCQLTDEQIHHLMKMIRDFSILFYRCRKAGL 240
Query: 163 -RPQHTQVYQKEQCPAGH-QVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQ 214
+H +VY++ C H ++ FG + R+T++CP CQ + + + C+
Sbjct: 241 ALSKHYKVYKRPNCGQCHCRITVCRFGDNN---RMTYFCPHCQKENPQHVDICK 291
>gi|205360991 nei endonuclease VIII-like 1 [Homo sapiens]
Length = 390
Score = 43.5 bits (101), Expect = 1e-04
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 98 QPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLG-SVLSA 138
+P+C LLDQR+F+G+GN ++ E LYR I P SVL A
Sbjct: 159 RPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200
>gi|148922852 general transcription factor IIH, polypeptide 2C [Homo
sapiens]
Length = 395
Score = 29.3 bits (64), Expect = 2.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 162 GRPQHTQVYQKEQCPAGHQVMKEAFG-PEDGLQRLTWWCPQCQPQLSEEPEQCQ 214
G PQHT +Q M G E GL ++CPQC+ + E P +C+
Sbjct: 253 GFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
>gi|148922900 general transcription factor IIH, polypeptide 2B [Homo
sapiens]
Length = 395
Score = 29.3 bits (64), Expect = 2.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 162 GRPQHTQVYQKEQCPAGHQVMKEAFG-PEDGLQRLTWWCPQCQPQLSEEPEQCQ 214
G PQHT +Q M G E GL ++CPQC+ + E P +C+
Sbjct: 253 GFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
>gi|6681762 general transcription factor IIH, polypeptide 2, 44kD
subunit [Homo sapiens]
Length = 395
Score = 29.3 bits (64), Expect = 2.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 162 GRPQHTQVYQKEQCPAGHQVMKEAFG-PEDGLQRLTWWCPQCQPQLSEEPEQCQ 214
G PQHT +Q M G E GL ++CPQC+ + E P +C+
Sbjct: 253 GFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
>gi|109809737 general transcription factor IIH, polypeptide 2D [Homo
sapiens]
Length = 395
Score = 29.3 bits (64), Expect = 2.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 162 GRPQHTQVYQKEQCPAGHQVMKEAFG-PEDGLQRLTWWCPQCQPQLSEEPEQCQ 214
G PQHT +Q M G E GL ++CPQC+ + E P +C+
Sbjct: 253 GFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
>gi|13124883 HsKin17 protein [Homo sapiens]
Length = 393
Score = 29.3 bits (64), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 191 GLQRLTWWCPQCQPQLSEE 209
GLQ+L W+C CQ Q +E
Sbjct: 20 GLQKLRWYCQMCQKQCRDE 38
>gi|28212272 hypothetical protein LOC161424 [Homo sapiens]
Length = 636
Score = 27.7 bits (60), Expect = 7.8
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 80 ILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGL----GNIIKNEALYRAGIHPLSLGSV 135
+L E FH + P+ TL+ + GL G + + A L +V
Sbjct: 425 LLLEAFHCAEPSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALGDVTV 484
Query: 136 LSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVM 182
L + +L+ H++ FST L + G Q+ Q PAG V+
Sbjct: 485 LGS----LLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVL 527
>gi|206597487 solute carrier family 5 (sodium/glucose
cotransporter), member 9 isoform 1 [Homo sapiens]
Length = 706
Score = 27.7 bits (60), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 12/35 (34%)
Query: 188 PEDGLQRLTWW---CP---------QCQPQLSEEP 210
PE+ L RLTWW CP + P++SE P
Sbjct: 581 PEEQLTRLTWWTRNCPLSELEKEAHESTPEISERP 615
>gi|206597483 solute carrier family 5 (sodium/glucose
cotransporter), member 9 isoform 2 [Homo sapiens]
Length = 681
Score = 27.7 bits (60), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 12/35 (34%)
Query: 188 PEDGLQRLTWW---CP---------QCQPQLSEEP 210
PE+ L RLTWW CP + P++SE P
Sbjct: 556 PEEQLTRLTWWTRNCPLSELEKEAHESTPEISERP 590
>gi|50658079 tubulin tyrosine ligase-like family, member 5 [Homo
sapiens]
Length = 1281
Score = 27.7 bits (60), Expect = 7.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 21 QVVKTGGSSKKLQPASLQSLWLQDTQVRLVLHFGGGGFLA 60
Q+++ G+ K+Q S +LQ Q+RL+ GG F A
Sbjct: 663 QILQDNGNLSKMQARIAFSAYLQHVQIRLMKDSGGQTFSA 702
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,204,010
Number of Sequences: 37866
Number of extensions: 409975
Number of successful extensions: 803
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 17
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.