Search of human proteins with 208610009

Search of human proteins with 208610009

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|208610009 hypothetical protein LOC93081 [Homo sapiens]
         (227 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|208610009 hypothetical protein LOC93081 [Homo sapiens]             469   e-132
gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens]    42   4e-04
gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens]     42   4e-04
gi|51242953 monoglyceride lipase isoform 2 [Homo sapiens]              32   0.45 
gi|6005786 monoglyceride lipase isoform 1 [Homo sapiens]               32   0.45 
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]    29   3.8  
gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens]              29   3.8  
gi|38198663 potassium channel tetramerisation domain containing ...    28   4.9  
gi|155722985 SMC5 protein [Homo sapiens]                               28   4.9  
gi|71051602 family with sequence similarity 108, member B1 isofo...    28   4.9  
gi|71051600 family with sequence similarity 108, member B1 isofo...    28   4.9  
gi|24432032 zinc finger protein 503 [Homo sapiens]                     28   8.4  

>gi|208610009 hypothetical protein LOC93081 [Homo sapiens]
          Length = 227

 Score =  469 bits (1206), Expect = e-132
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MSHTEVKLKIPFGNKLLDAVCLVPNKSLTYGIILTHGASGDMNLPHLMSLASHLASHGFF 60
           MSHTEVKLKIPFGNKLLDAVCLVPNKSLTYGIILTHGASGDMNLPHLMSLASHLASHGFF
Sbjct: 1   MSHTEVKLKIPFGNKLLDAVCLVPNKSLTYGIILTHGASGDMNLPHLMSLASHLASHGFF 60

Query: 61  CLRFTCKGLNIVHRIKAYKSVLNYLKTSGEYKLAGVFLGGRSMGSRAAASVMCHIEPDDG 120
           CLRFTCKGLNIVHRIKAYKSVLNYLKTSGEYKLAGVFLGGRSMGSRAAASVMCHIEPDDG
Sbjct: 61  CLRFTCKGLNIVHRIKAYKSVLNYLKTSGEYKLAGVFLGGRSMGSRAAASVMCHIEPDDG 120

Query: 121 DDFVRGLICISYPLHHPKQQHKLRDEDLFRLKEPVLFVSGSADEMCEKNLLEKVAQKMQA 180
           DDFVRGLICISYPLHHPKQQHKLRDEDLFRLKEPVLFVSGSADEMCEKNLLEKVAQKMQA
Sbjct: 121 DDFVRGLICISYPLHHPKQQHKLRDEDLFRLKEPVLFVSGSADEMCEKNLLEKVAQKMQA 180

Query: 181 PHKIHWIEKANHSMAVKGRSTNDVFKEINTQILFWIQEITEMDKKCH 227
           PHKIHWIEKANHSMAVKGRSTNDVFKEINTQILFWIQEITEMDKKCH
Sbjct: 181 PHKIHWIEKANHSMAVKGRSTNDVFKEINTQILFWIQEITEMDKKCH 227


>gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens]
          Length = 878

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 44  LPHLMSLASHLASHGFFCLRFTCKGLNIVHRIKAYKSVLNYLKTSGEYKLAGVFLGGRSM 103
           L  ++ +A+HL ++G       C    + H I A +S +  L+    +    + L G + 
Sbjct: 302 LGKVIPVATHLLNNGSGVGVLQC----LEHMIGAVRSKV--LEIHSHFPHKPIILIGWNT 355

Query: 104 GSRAAASVMCHIEPDDGDDFVRGLICISYPLHHPKQQHKLRDEDLFRLKEPVLFVSGSAD 163
           G    A V CH+   +   +V  ++C+ +PL          D+ L  +K PVLFV G   
Sbjct: 356 G----ALVACHVSVME---YVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNS 408

Query: 164 EMCEKNLLEKVAQKMQAPHKIHWIEKANHSMAV 196
             C    +E   +K++A + +  +  A+ ++ +
Sbjct: 409 LQCHPEAMEDFREKIRAENSLVVVGGADDNLRI 441


>gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens]
          Length = 791

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 44  LPHLMSLASHLASHGFFCLRFTCKGLNIVHRIKAYKSVLNYLKTSGEYKLAGVFLGGRSM 103
           L  ++ +A+HL ++G       C    + H I A +S +  L+    +    + L G + 
Sbjct: 215 LGKVIPVATHLLNNGSGVGVLQC----LEHMIGAVRSKV--LEIHSHFPHKPIILIGWNT 268

Query: 104 GSRAAASVMCHIEPDDGDDFVRGLICISYPLHHPKQQHKLRDEDLFRLKEPVLFVSGSAD 163
           G    A V CH+   +   +V  ++C+ +PL          D+ L  +K PVLFV G   
Sbjct: 269 G----ALVACHVSVME---YVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNS 321

Query: 164 EMCEKNLLEKVAQKMQAPHKIHWIEKANHSMAV 196
             C    +E   +K++A + +  +  A+ ++ +
Sbjct: 322 LQCHPEAMEDFREKIRAENSLVVVGGADDNLRI 354


>gi|51242953 monoglyceride lipase isoform 2 [Homo sapiens]
          Length = 303

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 150 RLKEPVLFVSGSADEMCEKN---LLEKVAQKMQAPHKIHWIEKANHSMAVK-GRSTNDVF 205
           +L  P L + GSAD +C+     LL ++A+      KI+  E A H +  +    TN VF
Sbjct: 226 KLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIY--EGAYHVLHKELPEVTNSVF 283

Query: 206 KEINTQILFWIQEIT 220
            EIN     W+ + T
Sbjct: 284 HEIN----MWVSQRT 294


>gi|6005786 monoglyceride lipase isoform 1 [Homo sapiens]
          Length = 313

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 150 RLKEPVLFVSGSADEMCEKN---LLEKVAQKMQAPHKIHWIEKANHSMAVK-GRSTNDVF 205
           +L  P L + GSAD +C+     LL ++A+      KI+  E A H +  +    TN VF
Sbjct: 236 KLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIY--EGAYHVLHKELPEVTNSVF 293

Query: 206 KEINTQILFWIQEIT 220
            EIN     W+ + T
Sbjct: 294 HEIN----MWVSQRT 304


>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
          Length = 1976

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 19/81 (23%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 138 KQQHKLRDEDLFRLKEPVLFVSGSADEMCEKN--LLEK---VAQKMQAPHKIH-WIEKAN 191
           +++ + +DE+L ++KE    V G  +EM  K+  LLE+   +A+++QA  ++    E+  
Sbjct: 851 EEELQAKDEELLKVKEKQTKVEGELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMR 910

Query: 192 HSMAVKGRSTNDVFKEINTQI 212
             +A K +   ++  ++ +++
Sbjct: 911 ARLAAKKQELEEILHDLESRV 931


>gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens]
          Length = 575

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 128 ICISYPLHHPKQQHKLRDEDLFRLKEPVLFVSGSADEMCEKNLLEKVAQKMQ 179
           +C  YPL     +  L+       K P+L  S S  ++C   +L K+ QK++
Sbjct: 122 LCHLYPLPKETWKFTLQKARQIVKKSPILKYSRSGSDICSLPVLAKICQKIK 173


>gi|38198663 potassium channel tetramerisation domain containing 8
           [Homo sapiens]
          Length = 473

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 130 ISYPLHHPKQQHKLRDEDLFRLKEPVLFVSGSA-------DEMCEKNLLEKVAQ 176
           ++ P H P+++  LR+ + F+L + V  +S          DE C+ +L + V+Q
Sbjct: 118 LALPEHFPEKERLLREAEYFQLTDLVKLLSPKVTKQNSLNDEGCQSDLEDNVSQ 171


>gi|155722985 SMC5 protein [Homo sapiens]
          Length = 1101

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 145 DEDLFRLKEPVLFVSGSADEMCEKN--LLEKVAQKMQAPHKIH-------WIEKANHSMA 195
           D  L  L+E    +    +E+ +K   LLE+  +K Q   KI         +E+   ++ 
Sbjct: 670 DSGLIALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKISSKLGSLKLMEQDTCNLE 729

Query: 196 VKGRSTNDVFKEINTQILFWIQEITEMDKKC 226
            + R  +   KEIN Q    + E+T + K C
Sbjct: 730 EEERKASTKIKEINVQKAKLVTELTNLIKIC 760


>gi|71051602 family with sequence similarity 108, member B1 isoform
           2 [Homo sapiens]
          Length = 288

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/48 (25%), Positives = 27/48 (56%)

Query: 146 EDLFRLKEPVLFVSGSADEMCEKNLLEKVAQKMQAPHKIHWIEKANHS 193
           + + ++  PVL + G+ DE+ + +    + ++ Q P +  W+E A H+
Sbjct: 218 DKISKITSPVLIIHGTEDEVIDFSHGLALFERCQRPVEPLWVEGAGHN 265


>gi|71051600 family with sequence similarity 108, member B1 isoform
           1 [Homo sapiens]
          Length = 293

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/48 (25%), Positives = 27/48 (56%)

Query: 146 EDLFRLKEPVLFVSGSADEMCEKNLLEKVAQKMQAPHKIHWIEKANHS 193
           + + ++  PVL + G+ DE+ + +    + ++ Q P +  W+E A H+
Sbjct: 218 DKISKITSPVLIIHGTEDEVIDFSHGLALFERCQRPVEPLWVEGAGHN 265


>gi|24432032 zinc finger protein 503 [Homo sapiens]
          Length = 646

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 74  RIKAYKSVLNYLKTS----GEYKLAGVFLGGRSMGSRAAASVMCHIE-PDDGDDFVRGLI 128
           R    + +L++L+T     G  KL   +    S+ S AAA++ CH+  P  G     G +
Sbjct: 528 RFATSEELLSHLRTHTAFPGTDKLLSGYPSSSSLASAAAAAMACHMHIPTSGAPGSPGTL 587

Query: 129 CISYPLH 135
            +  P H
Sbjct: 588 ALRSPHH 594


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,567,826
Number of Sequences: 37866
Number of extensions: 361855
Number of successful extensions: 731
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 13
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.