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Search of human proteins with 199559785
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|199559785 pseudouridylate synthase 3 [Homo sapiens]
(481 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|199559785 pseudouridylate synthase 3 [Homo sapiens] 983 0.0
gi|70166634 pseudouridine synthase 1 isoform 2 [Homo sapiens] 78 2e-14
gi|70166599 pseudouridine synthase 1 isoform 2 [Homo sapiens] 78 2e-14
gi|70166645 pseudouridine synthase 1 isoform 1 [Homo sapiens] 78 2e-14
gi|23503259 pseudouridylate synthase-like 1 [Homo sapiens] 64 3e-10
gi|6912482 leucine zipper-EF-hand containing transmembrane prote... 32 0.98
gi|110347443 TATA element modulatory factor 1 [Homo sapiens] 32 0.98
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 32 1.3
gi|4503611 ets variant 6 [Homo sapiens] 31 2.2
gi|31982906 cingulin-like 1 [Homo sapiens] 31 2.2
gi|195539368 coiled-coil domain containing 149 isoform 2 [Homo s... 31 2.2
gi|27735025 coiled-coil domain containing 149 isoform 1 [Homo sa... 31 2.2
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 31 2.9
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 31 2.9
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 31 2.9
gi|4759302 VAMP-associated protein B/C [Homo sapiens] 31 2.9
gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens] 30 3.7
gi|22779870 PDLIM1 interacting kinase 1 like [Homo sapiens] 30 4.9
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 30 6.4
gi|153791839 sodium channel associated protein 1 [Homo sapiens] 30 6.4
gi|50345997 E1A binding protein p300 [Homo sapiens] 29 8.3
>gi|199559785 pseudouridylate synthase 3 [Homo sapiens]
Length = 481
Score = 983 bits (2542), Expect = 0.0
Identities = 481/481 (100%), Positives = 481/481 (100%)
Query: 1 MADNDTDRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAH 60
MADNDTDRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAH
Sbjct: 1 MADNDTDRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAH 60
Query: 61 GRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKG 120
GRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKG
Sbjct: 61 GRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKG 120
Query: 121 VSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPV 180
VSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPV
Sbjct: 121 VSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPV 180
Query: 181 EPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRT 240
EPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRT
Sbjct: 181 EPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRT 240
Query: 241 ILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIID 300
ILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIID
Sbjct: 241 ILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIID 300
Query: 301 ELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTH 360
ELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTH
Sbjct: 301 ELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTH 360
Query: 361 MLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKC 420
MLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKC
Sbjct: 361 MLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKC 420
Query: 421 QGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEENTNLETPTKRVCVDTEIKSI 480
QGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEENTNLETPTKRVCVDTEIKSI
Sbjct: 421 QGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEENTNLETPTKRVCVDTEIKSI 480
Query: 481 I 481
I
Sbjct: 481 I 481
>gi|70166634 pseudouridine synthase 1 isoform 2 [Homo sapiens]
Length = 399
Score = 77.8 bits (190), Expect = 2e-14
Identities = 78/295 (26%), Positives = 115/295 (38%), Gaps = 78/295 (26%)
Query: 62 RRHVALRIAYMGWGYQGFASQENTNN--TIEEKLFEALTKTRLV-----ESRQTSNYHRC 114
+R + L +AY G GY G ++ TIE+ L AL ++ + E + ++ RC
Sbjct: 55 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 114
Query: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
RTDKGVSA GQV+SL + +D K +N LP IRI
Sbjct: 115 ARTDKGVSAAGQVVSLKVWL-------IDDILEK---------------INSHLPSHIRI 152
Query: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----RADLDIVTMDYAAQK------------YV 217
L V F+++ C RTY Y P D D+ Y Y
Sbjct: 153 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK 212
Query: 218 GTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRW------QEPF-----QLCQ 266
GTH+F N Q Q P R+ +EPF +
Sbjct: 213 GTHNFHNFTS-------------------QKGPQDPSACRYILEMYCEEPFVREGLEFAV 253
Query: 267 FEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEK--NPQKPQYSMAVE 319
V GQ+F+ HQ+R M+ ++ I +G +++ EK P+ P + +E
Sbjct: 254 IRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLE 308
>gi|70166599 pseudouridine synthase 1 isoform 2 [Homo sapiens]
Length = 399
Score = 77.8 bits (190), Expect = 2e-14
Identities = 78/295 (26%), Positives = 115/295 (38%), Gaps = 78/295 (26%)
Query: 62 RRHVALRIAYMGWGYQGFASQENTNN--TIEEKLFEALTKTRLV-----ESRQTSNYHRC 114
+R + L +AY G GY G ++ TIE+ L AL ++ + E + ++ RC
Sbjct: 55 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 114
Query: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
RTDKGVSA GQV+SL + +D K +N LP IRI
Sbjct: 115 ARTDKGVSAAGQVVSLKVWL-------IDDILEK---------------INSHLPSHIRI 152
Query: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----RADLDIVTMDYAAQK------------YV 217
L V F+++ C RTY Y P D D+ Y Y
Sbjct: 153 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK 212
Query: 218 GTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRW------QEPF-----QLCQ 266
GTH+F N Q Q P R+ +EPF +
Sbjct: 213 GTHNFHNFTS-------------------QKGPQDPSACRYILEMYCEEPFVREGLEFAV 253
Query: 267 FEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEK--NPQKPQYSMAVE 319
V GQ+F+ HQ+R M+ ++ I +G +++ EK P+ P + +E
Sbjct: 254 IRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLE 308
>gi|70166645 pseudouridine synthase 1 isoform 1 [Homo sapiens]
Length = 427
Score = 77.8 bits (190), Expect = 2e-14
Identities = 78/295 (26%), Positives = 115/295 (38%), Gaps = 78/295 (26%)
Query: 62 RRHVALRIAYMGWGYQGFASQENTNN--TIEEKLFEALTKTRLV-----ESRQTSNYHRC 114
+R + L +AY G GY G ++ TIE+ L AL ++ + E + ++ RC
Sbjct: 83 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 142
Query: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
RTDKGVSA GQV+SL + +D K +N LP IRI
Sbjct: 143 ARTDKGVSAAGQVVSLKVWL-------IDDILEK---------------INSHLPSHIRI 180
Query: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----RADLDIVTMDYAAQK------------YV 217
L V F+++ C RTY Y P D D+ Y Y
Sbjct: 181 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK 240
Query: 218 GTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRW------QEPF-----QLCQ 266
GTH+F N Q Q P R+ +EPF +
Sbjct: 241 GTHNFHNFTS-------------------QKGPQDPSACRYILEMYCEEPFVREGLEFAV 281
Query: 267 FEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEK--NPQKPQYSMAVE 319
V GQ+F+ HQ+R M+ ++ I +G +++ EK P+ P + +E
Sbjct: 282 IRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLE 336
>gi|23503259 pseudouridylate synthase-like 1 [Homo sapiens]
Length = 303
Score = 63.9 bits (154), Expect = 3e-10
Identities = 76/287 (26%), Positives = 108/287 (37%), Gaps = 44/287 (15%)
Query: 71 YMGWGYQGFASQENTNNTI--EEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFGQVI 128
Y+G + G A+ T + + L EA + VE + + RTD GV A
Sbjct: 20 YVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVR---FTISSRTDAGVHALSNAA 76
Query: 129 SLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSARF 188
LD++ + R F + A A +R+ P IR+L V F AR
Sbjct: 77 HLDVQRRSGR----PPFPPEVLAEALNTHLRH---------PAIRVLRAFRVPSDFHARH 123
Query: 189 SCLERTYRY---------------------FFPRADLDIVTMDYAAQKYVGTHDFRNL-- 225
+ RTY Y P LD+V M AAQ +GTHDF
Sbjct: 124 AATSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQS 183
Query: 226 CKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAI 285
V + V +R +S +P E R + E Q+FLY QVR M A+
Sbjct: 184 AGSPVPSPVRTLRRVSVSPGQASPLVTPEESR---KLRFWNLEFESQSFLYRQVRRMTAV 240
Query: 286 LFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENV 332
L +G G P + +L + K Q +A L L + N+
Sbjct: 241 LVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLYGNL 287
>gi|6912482 leucine zipper-EF-hand containing transmembrane protein
1 [Homo sapiens]
Length = 739
Score = 32.3 bits (72), Expect = 0.98
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 7 DRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKR 53
++ + E L + V++ +++Q +KKE +K E+ + E+ A TKR
Sbjct: 565 EKEELELLKEDVQDYSEDLQEIKKELSKTGEEKYVEESKASKRLTKR 611
>gi|110347443 TATA element modulatory factor 1 [Homo sapiens]
Length = 1093
Score = 32.3 bits (72), Expect = 0.98
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 2 ADNDTDRNQTEKLLKRVRELEQEVQRLK-----KEQAKNKEDSNIRE 43
A + + N KL K+V+ELE+E+Q LK KE+ + + NI++
Sbjct: 581 AKDKENENMVAKLNKKVKELEEELQHLKQVLDGKEEVEKQHRENIKK 627
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 32.0 bits (71), Expect = 1.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 22 EQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAHGRRHVALRIAY 71
EQE +R+K+ A D +RENS G +++H R V AY
Sbjct: 1770 EQEFERMKEMMAFLVRDIKVRENSCPVGAHIAILSYNSHARHLVRFSDAY 1819
>gi|4503611 ets variant 6 [Homo sapiens]
Length = 452
Score = 31.2 bits (69), Expect = 2.2
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 323 VLYDCKFEN-VKWIYDQEAQEFNITH---LQQLWANHAVKTHMLYSML 366
+L D ++EN ++W D+E++ F I L +LW NH +T+M Y +
Sbjct: 348 LLSDSRYENFIRW-EDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 394
>gi|31982906 cingulin-like 1 [Homo sapiens]
Length = 1302
Score = 31.2 bits (69), Expect = 2.2
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 3 DNDTDRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAHGR 62
+N+ + ++E+L +RV +L+++++ LK ++AK KE E G+ ++ + H R
Sbjct: 830 ENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYE-----GEIRQLEEALVHAR 884
Query: 63 RHVALRI-AYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHR 113
+ + A + A+Q N + T +E+ + L++ ES Q R
Sbjct: 885 KEEKEAVSARRALENELEAAQGNLSQTTQEQ--KQLSEKLKEESEQKEQLRR 934
>gi|195539368 coiled-coil domain containing 149 isoform 2 [Homo
sapiens]
Length = 529
Score = 31.2 bits (69), Expect = 2.2
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 14 LLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKT 51
L +R+++L +EV LK AK K R+NS G GK+
Sbjct: 223 LQERLKQLHEEVNLLKSNIAKYKNALERRKNSKGQGKS 260
>gi|27735025 coiled-coil domain containing 149 isoform 1 [Homo
sapiens]
Length = 267
Score = 31.2 bits (69), Expect = 2.2
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 14 LLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKT 51
L +R+++L +EV LK AK K R+NS G GK+
Sbjct: 168 LQERLKQLHEEVNLLKSNIAKYKNALERRKNSKGQGKS 205
>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4470
Score = 30.8 bits (68), Expect = 2.9
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 15/70 (21%)
Query: 279 VRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQ 338
++ +L++ G ME+P I+ E+ P+YS+ +E L+D + +N K +YD
Sbjct: 530 IKSSAKLLYMCGGLMERPLILAEVA--------PRYSVMLE----LFDAELDNAKILYDA 577
Query: 339 E---AQEFNI 345
+ ++E NI
Sbjct: 578 QMAASEEGNI 587
>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 30.8 bits (68), Expect = 2.9
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 15/70 (21%)
Query: 279 VRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQ 338
++ +L++ G ME+P I+ E+ P+YS+ +E L+D + +N K +YD
Sbjct: 518 IKSSAKLLYMCGGLMERPLILAEVA--------PRYSVMLE----LFDAELDNAKILYDA 565
Query: 339 E---AQEFNI 345
+ ++E NI
Sbjct: 566 QMAASEEGNI 575
>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 30.8 bits (68), Expect = 2.9
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 15/70 (21%)
Query: 279 VRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQ 338
++ +L++ G ME+P I+ E+ P+YS+ +E L+D + +N K +YD
Sbjct: 518 IKSSAKLLYMCGGLMERPLILAEVA--------PRYSVMLE----LFDAELDNAKILYDA 565
Query: 339 E---AQEFNI 345
+ ++E NI
Sbjct: 566 QMAASEEGNI 575
>gi|4759302 VAMP-associated protein B/C [Homo sapiens]
Length = 243
Score = 30.8 bits (68), Expect = 2.9
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 7 DRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIR 42
D + +K+++ + L+ EVQRL++E + KE+ +R
Sbjct: 162 DDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLR 197
>gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]
Length = 775
Score = 30.4 bits (67), Expect = 3.7
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 10 QTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAF 55
QT++L + V EL+ E+Q ++ E KN+ D ++E A + K F
Sbjct: 291 QTKQLTREVEELKSELQAIRDE--KNQPDPRLQELQEEAARLKSHF 334
>gi|22779870 PDLIM1 interacting kinase 1 like [Homo sapiens]
Length = 341
Score = 30.0 bits (66), Expect = 4.9
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 380 PKMD-----GMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKCQGLESRIQHFVRRG 434
PK D G +G V +VI++TSA V K+R + P + +E ++ F
Sbjct: 6 PKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAP-------ENVELALREFWALS 58
Query: 435 RI--EHPHLFHEEETKAKRD 452
I +HP++ H EE ++D
Sbjct: 59 SIKSQHPNVIHLEECILQKD 78
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 29.6 bits (65), Expect = 6.4
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 5 DTDRNQTEKLLKRVRE-----LEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSA 59
+ +R + E+L +RV E E+E +RL+ EQA+ KE+ R+ A + + + +
Sbjct: 506 ELERQKREELAQRVAEERTTRREEESRRLEAEQAREKEEQLQRQAEERALREREEAERAQ 565
Query: 60 HGR------RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVES--RQTSNY 111
+ R A R+ + F +E +++L E + +TR E+ ++TS+
Sbjct: 566 RQKEEEARVREEAERVRQE--REKHFQREEQERLERKKRLEEIMKRTRRTEATDKKTSD- 622
Query: 112 HRCGRTDKGVSAFGQVIS 129
R G KG G +S
Sbjct: 623 QRNGDIAKGALTGGTEVS 640
>gi|153791839 sodium channel associated protein 1 [Homo sapiens]
Length = 688
Score = 29.6 bits (65), Expect = 6.4
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 12 EKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAHGRRHVALR 68
E+L K++R+ + E L+ AK +E +N+ E+ G K K SAHGR + R
Sbjct: 222 EQLRKKLRQAKLE---LRVAVAKVEELTNVTEDLQGQMKKKEKDVVSAHGREEASDR 275
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 29.3 bits (64), Expect = 8.3
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 14 LLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAHGRRHVALRIAYMG 73
L + ++ELEQE + K+E+ + E +++ + + K K + + + +
Sbjct: 1513 LEESIKELEQEEEERKREENTSNESTDVTKGDSKNAKKK--------NNKKTSKNKSSLS 1564
Query: 74 WGYQGFASQENTNNTIEEKLFEALTKTRLV 103
G + N +N + +KL+ + K + V
Sbjct: 1565 RGNKKKPGMPNVSNDLSQKLYATMEKHKEV 1594
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,198,855
Number of Sequences: 37866
Number of extensions: 806499
Number of successful extensions: 3356
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3329
Number of HSP's gapped (non-prelim): 31
length of query: 481
length of database: 18,247,518
effective HSP length: 106
effective length of query: 375
effective length of database: 14,233,722
effective search space: 5337645750
effective search space used: 5337645750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.