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Search of human proteins with 19913432
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19913432 ATPase, H+ transporting, lysosomal, V0 subunit d1
[Homo sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19913432 ATPase, H+ transporting, lysosomal, V0 subunit d1 [H... 712 0.0
gi|22749165 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit... 496 e-140
gi|40807445 protein regulator of cytokinesis 1 isoform 3 [Homo s... 32 1.1
gi|40807443 protein regulator of cytokinesis 1 isoform 2 [Homo s... 32 1.1
gi|4506039 protein regulator of cytokinesis 1 isoform 1 [Homo sa... 32 1.1
gi|239049447 mitochondrial malic enzyme 3 [Homo sapiens] 30 3.2
gi|62420882 mitochondrial malic enzyme 3 [Homo sapiens] 30 3.2
gi|62420880 mitochondrial malic enzyme 3 [Homo sapiens] 30 3.2
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] 29 5.5
gi|193083168 ectonucleoside triphosphate diphosphohydrolase 4 is... 29 5.5
gi|71834863 Rho GTPase activating protein 5 isoform a [Homo sapi... 28 9.4
gi|71834861 Rho GTPase activating protein 5 isoform b [Homo sapi... 28 9.4
>gi|19913432 ATPase, H+ transporting, lysosomal, V0 subunit d1 [Homo
sapiens]
Length = 351
Score = 712 bits (1837), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN 60
MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN
Sbjct: 1 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN 60
Query: 61 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR 120
EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR
Sbjct: 61 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR 120
Query: 121 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI 180
SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI
Sbjct: 121 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI 180
Query: 181 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL 240
IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL
Sbjct: 181 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL 240
Query: 241 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK 300
FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK
Sbjct: 241 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK 300
Query: 301 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF 351
LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF
Sbjct: 301 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF 351
>gi|22749165 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit D2
[Homo sapiens]
Length = 350
Score = 496 bits (1276), Expect = e-140
Identities = 236/345 (68%), Positives = 292/345 (84%), Gaps = 1/345 (0%)
Query: 6 ELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPL 65
ELYFNVD+GYLEGLVRG KA +L+Q DY+NLVQCETLEDLK+HLQ+TDYGNFLAN +PL
Sbjct: 6 ELYFNVDHGYLEGLVRGCKASLLTQQDYINLVQCETLEDLKIHLQTTDYGNFLANHTNPL 65
Query: 66 TVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAEL 125
TVS ID +++++ EF + RNH+ EPL++FL ++T SYMIDNVILL+ G L ++S+ E+
Sbjct: 66 TVSKIDTEMRKRLCGEFEYFRNHSLEPLSTFLTYMTCSYMIDNVILLMNGALQKKSVKEI 125
Query: 126 VPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTL 185
+ KCHPLG F +MEAVNIA+TP++L+NAIL++TPLA FFQDC+SE LDE+NIE++RN L
Sbjct: 126 LGKCHPLGRFTEMEAVNIAETPSDLFNAILIETPLAPFFQDCMSENALDELNIELLRNKL 185
Query: 186 YKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCG 245
YK+YLE+FYKFC G TA+ MCPILEFEADRRAFIIT+NSFGTELSKEDR L+P G
Sbjct: 186 YKSYLEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIITLNSFGTELSKEDRETLYPTFG 245
Query: 246 RLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLA 305
+LYPEGL LA+A+D++Q+KNVAD+Y YK LFE G + G KTLED F+E EV++N LA
Sbjct: 246 KLYPEGLRLLAQAEDFDQMKNVADHYGVYKPLFEAVGGS-GGKTLEDVFYEREVQMNVLA 304
Query: 306 FLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPI 350
F QFH+GVFYA+VKLKEQE RNIVWIAECI+QRHR KI++YIPI
Sbjct: 305 FNRQFHYGVFYAYVKLKEQEIRNIVWIAECISQRHRTKINSYIPI 349
>gi|40807445 protein regulator of cytokinesis 1 isoform 3 [Homo
sapiens]
Length = 566
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 233 SKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEG 280
S+E R P C Y E L QL A ++ + +YY +K LFEG
Sbjct: 311 SQEQRQAFAPFCAEDYTESLLQLHDA----EIVRLKNYYEVHKELFEG 354
>gi|40807443 protein regulator of cytokinesis 1 isoform 2 [Homo
sapiens]
Length = 606
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 233 SKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEG 280
S+E R P C Y E L QL A ++ + +YY +K LFEG
Sbjct: 311 SQEQRQAFAPFCAEDYTESLLQLHDA----EIVRLKNYYEVHKELFEG 354
>gi|4506039 protein regulator of cytokinesis 1 isoform 1 [Homo
sapiens]
Length = 620
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 233 SKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEG 280
S+E R P C Y E L QL A ++ + +YY +K LFEG
Sbjct: 311 SQEQRQAFAPFCAEDYTESLLQLHDA----EIVRLKNYYEVHKELFEG 354
>gi|239049447 mitochondrial malic enzyme 3 [Homo sapiens]
Length = 604
Score = 30.0 bits (66), Expect = 3.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 221 FIITINSFGTELSKE--DRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYK 275
F++T E+S++ + +L+P + L + DY N+A YYPE K
Sbjct: 513 FLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDYAYKHNLASYYPEPK 569
>gi|62420882 mitochondrial malic enzyme 3 [Homo sapiens]
Length = 604
Score = 30.0 bits (66), Expect = 3.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 221 FIITINSFGTELSKE--DRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYK 275
F++T E+S++ + +L+P + L + DY N+A YYPE K
Sbjct: 513 FLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDYAYKHNLASYYPEPK 569
>gi|62420880 mitochondrial malic enzyme 3 [Homo sapiens]
Length = 604
Score = 30.0 bits (66), Expect = 3.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 221 FIITINSFGTELSKE--DRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYK 275
F++T E+S++ + +L+P + L + DY N+A YYPE K
Sbjct: 513 FLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDYAYKHNLASYYPEPK 569
>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
Length = 4624
Score = 29.3 bits (64), Expect = 5.5
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 16 LEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDRLK 75
LEG V L S + +NL +C+ LE LK + TDY LAN +P T+ I+D +K
Sbjct: 203 LEGFVNVLSGAQESLKEKVNLRKCDILE-LKTLKEPTDYLT-LAN--NPETLGKIEDCMK 258
>gi|193083168 ectonucleoside triphosphate diphosphohydrolase 4
isoform b [Homo sapiens]
Length = 608
Score = 29.3 bits (64), Expect = 5.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 218 RRAFIITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLL 277
R A I+ + T+++ E P + LA+ D Q ++V Y Y
Sbjct: 265 RTAGILDMGGVSTQIAYE-----VPKTEEVAKNLLAEFNLGCDVHQTEHV---YRVYVAT 316
Query: 278 FEGAGSNPGDKTLEDRFFEHEVKLNKL 304
F G G N + EDR F + ++ N+L
Sbjct: 317 FLGFGGNAARQRYEDRIFANTIQKNRL 343
>gi|71834863 Rho GTPase activating protein 5 isoform a [Homo
sapiens]
Length = 1502
Score = 28.5 bits (62), Expect = 9.4
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 20/157 (12%)
Query: 131 PLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYL 190
P + ++ +N + P +L + + + Q ISE+ EM E + TL K
Sbjct: 385 PWDETDHIDKINDRRIPFDLLSTLEAEKVYQNHVQHLISEKRRVEMK-EKFKKTLEKIQF 443
Query: 191 ESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS---FG------TELSKED-RAKL 240
S G + MC ++E EA + +I +S +G E +KE+ + L
Sbjct: 444 IS-------PGQPWEEVMCFVMEDEAYK--YITEADSKEVYGRHQREIVEKAKEEFQEML 494
Query: 241 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLL 277
F H Y L +D ++ V P YK L
Sbjct: 495 FEHSELFYDLDLNATPSSDKMSEIHTVLSEEPRYKAL 531
>gi|71834861 Rho GTPase activating protein 5 isoform b [Homo
sapiens]
Length = 1501
Score = 28.5 bits (62), Expect = 9.4
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 20/157 (12%)
Query: 131 PLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYL 190
P + ++ +N + P +L + + + Q ISE+ EM E + TL K
Sbjct: 385 PWDETDHIDKINDRRIPFDLLSTLEAEKVYQNHVQHLISEKRRVEMK-EKFKKTLEKIQF 443
Query: 191 ESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS---FG------TELSKED-RAKL 240
S G + MC ++E EA + +I +S +G E +KE+ + L
Sbjct: 444 IS-------PGQPWEEVMCFVMEDEAYK--YITEADSKEVYGRHQREIVEKAKEEFQEML 494
Query: 241 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLL 277
F H Y L +D ++ V P YK L
Sbjct: 495 FEHSELFYDLDLNATPSSDKMSEIHTVLSEEPRYKAL 531
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.140 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,325,067
Number of Sequences: 37866
Number of extensions: 500932
Number of successful extensions: 1006
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 15
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.