Search of human proteins with 197245393

Search of human proteins with 197245393

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|197245393 family with sequence similarity 127, member B
isoform 2 [Homo sapiens]
         (83 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|197245393 family with sequence similarity 127, member B isofo...   173   3e-44
gi|118200333 family with sequence similarity 127, member B isofo...   134   1e-32
gi|239757911 PREDICTED: similar to Family with sequence similari...   132   5e-32
gi|118200337 family with sequence similarity 127, member C [Homo...   130   3e-31
gi|118200335 family with sequence similarity 127, member A [Homo...   123   3e-29
gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo sapi...    67   4e-12
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]       37   0.003
gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]         31   0.24 
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]       31   0.24 
gi|49355807 leucine zipper, down-regulated in cancer 1-like [Hom...    30   0.32 
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ...    27   4.6  
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ...    27   4.6  
gi|5031819 potassium voltage-gated channel, shaker-related subfa...    27   4.6  
gi|4504817 potassium voltage-gated channel, shaker-related subfa...    26   6.0  
gi|88758565 potassium voltage-gated channel, shaker-related subf...    26   7.8  

>gi|197245393 family with sequence similarity 127, member B
          isoform 2 [Homo sapiens]
          Length = 83

 Score =  173 bits (438), Expect = 3e-44
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
          MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN
Sbjct: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60

Query: 61 DALKTYATTAIAIHRISPTDCGS 83
          DALKTYATTAIAIHRISPTDCGS
Sbjct: 61 DALKTYATTAIAIHRISPTDCGS 83


>gi|118200333 family with sequence similarity 127, member B
          isoform 1 [Homo sapiens]
          Length = 113

 Score =  134 bits (338), Expect = 1e-32
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
          MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN
Sbjct: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60

Query: 61 DALK 64
          DALK
Sbjct: 61 DALK 64


>gi|239757911 PREDICTED: similar to Family with sequence
          similarity 127, member B [Homo sapiens]
          Length = 113

 Score =  132 bits (333), Expect = 5e-32
 Identities = 63/64 (98%), Positives = 63/64 (98%)

Query: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
          MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFSN
Sbjct: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN 60

Query: 61 DALK 64
          DALK
Sbjct: 61 DALK 64


>gi|118200337 family with sequence similarity 127, member C [Homo
          sapiens]
          Length = 113

 Score =  130 bits (326), Expect = 3e-31
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
          M+GRVQLMKALLA PLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN
Sbjct: 1  MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60

Query: 61 DALK 64
          DALK
Sbjct: 61 DALK 64


>gi|118200335 family with sequence similarity 127, member A [Homo
          sapiens]
          Length = 113

 Score =  123 bits (309), Expect = 3e-29
 Identities = 58/64 (90%), Positives = 61/64 (95%)

Query: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
          MDGRVQL+KALLA P+RPA RRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFS+
Sbjct: 1  MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS 60

Query: 61 DALK 64
          DALK
Sbjct: 61 DALK 64


>gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo
          sapiens]
          Length = 146

 Score = 66.6 bits (161), Expect = 4e-12
 Identities = 28/39 (71%), Positives = 35/39 (89%)

Query: 26 PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALK 64
          P+PFPETF+G++ RLPEFIVQT+SYM V+EN F NDA+K
Sbjct: 50 PVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMK 88


>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
          Length = 475

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDA 62
           P+ +  TF GD+ +LPEF+VQ  SYM V  + +  +A
Sbjct: 237 PLQYTLTFSGDSQKLPEFLVQLYSYMRVRGHLYPTEA 273


>gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
          Length = 325

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKTYATTAIAIHR 75
           P   PE FDG+ D L  F+ Q   +M      FS D ++    T++   R
Sbjct: 79  PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGR 128


>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
          Length = 708

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKTYATTAIAIHR 75
           P   PE FDG+ D L  F+ Q   +M      FS D ++    T++   R
Sbjct: 79  PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGR 128


>gi|49355807 leucine zipper, down-regulated in cancer 1-like [Homo
           sapiens]
          Length = 239

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDA 62
           P   PE F GD  RL  F++Q   +M    + F  +A
Sbjct: 98  PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEA 134


>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
           isoform 1 [Homo sapiens]
          Length = 1112

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 8   MKALLAGPLRPAARRWRNPIPFPETFDGD 36
           + AL AG L P A + +  +P PE  D D
Sbjct: 505 VSALFAGELNPVAPKAQKKVPVPEGLDLD 533


>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
           isoform 2 [Homo sapiens]
          Length = 1153

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 8   MKALLAGPLRPAARRWRNPIPFPETFDGD 36
           + AL AG L P A + +  +P PE  D D
Sbjct: 596 VSALFAGELNPVAPKAQKKVPVPEGLDLD 624


>gi|5031819 potassium voltage-gated channel, shaker-related
           subfamily, member 10 [Homo sapiens]
          Length = 511

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 29  FPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKTYATTAIAIHR 75
           FPET  GD ++  +F     +  F D N  S D +  Y  +   I R
Sbjct: 107 FPETLLGDREKRMQFFDSMRNEYFFDRNRPSFDGILYYYQSGGKIRR 153


>gi|4504817 potassium voltage-gated channel, shaker-related
           subfamily, member 4 [Homo sapiens]
          Length = 653

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 29  FPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKTY 66
           FPET  GD ++  ++     +  F D N  S DA+  Y
Sbjct: 197 FPETLLGDPEKRTQYFDPLRNEYFFDRNRPSFDAILYY 234


>gi|88758565 potassium voltage-gated channel, shaker-related
           subfamily, member 3 [Homo sapiens]
          Length = 575

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)

Query: 29  FPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKTYATTAIAIHR 75
           FPET  GD  R   +     +  F D N  S DA+  Y  +   I R
Sbjct: 125 FPETLLGDPKRRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRR 171


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,363,541
Number of Sequences: 37866
Number of extensions: 130049
Number of successful extensions: 262
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 15
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.