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Search of human proteins with 194473668
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194473668 mercaptopyruvate sulfurtransferase isoform 1 [Homo
sapiens]
(317 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194473668 mercaptopyruvate sulfurtransferase isoform 1 [Homo ... 657 0.0
gi|61835204 mercaptopyruvate sulfurtransferase isoform 2 [Homo s... 620 e-178
gi|194473681 mercaptopyruvate sulfurtransferase isoform 2 [Homo ... 620 e-178
gi|17402865 thiosulfate sulfurtransferase [Homo sapiens] 377 e-105
gi|163965377 putative thiosulfate sulfurtransferase KAT isoform ... 36 0.039
gi|47716687 zinc finger protein 167 isoform 1 [Homo sapiens] 33 0.43
gi|47716685 zinc finger protein 167 isoform 2 [Homo sapiens] 33 0.43
gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens] 32 0.97
gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens] 32 0.97
gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] 31 1.3
gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] 31 1.3
gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] 31 1.3
gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] 31 1.3
gi|163965371 putative thiosulfate sulfurtransferase KAT isoform ... 31 1.3
gi|7661862 protein phosphatase 1F [Homo sapiens] 30 2.2
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens] 30 2.8
gi|109638751 ubiquitin specific protease 6 [Homo sapiens] 29 4.8
gi|85797660 limkain b1 [Homo sapiens] 29 4.8
gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens] 29 6.3
gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens] 29 6.3
gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens] 29 6.3
gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens] 29 6.3
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom... 29 6.3
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom... 29 6.3
>gi|194473668 mercaptopyruvate sulfurtransferase isoform 1 [Homo
sapiens]
Length = 317
Score = 657 bits (1694), Expect = 0.0
Identities = 317/317 (100%), Positives = 317/317 (100%)
Query: 1 MAEPGSRESETRARSPSVAAMASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK 60
MAEPGSRESETRARSPSVAAMASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK
Sbjct: 1 MAEPGSRESETRARSPSVAAMASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK 60
Query: 61 LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY 120
LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY
Sbjct: 61 LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY 120
Query: 121 DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP 180
DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP
Sbjct: 121 DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP 180
Query: 181 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE 240
AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE
Sbjct: 181 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE 240
Query: 241 GLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWY 300
GLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWY
Sbjct: 241 GLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWY 300
Query: 301 MRARPEDVISEGRGKTH 317
MRARPEDVISEGRGKTH
Sbjct: 301 MRARPEDVISEGRGKTH 317
>gi|61835204 mercaptopyruvate sulfurtransferase isoform 2 [Homo
sapiens]
Length = 297
Score = 620 bits (1598), Expect = e-178
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 21 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 80
MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
Sbjct: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 81 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 140
DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
Sbjct: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
Query: 141 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 200
GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
Sbjct: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
Query: 201 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 260
VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
Sbjct: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
Query: 261 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 317
SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
Sbjct: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
>gi|194473681 mercaptopyruvate sulfurtransferase isoform 2 [Homo
sapiens]
Length = 297
Score = 620 bits (1598), Expect = e-178
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 21 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 80
MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
Sbjct: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 81 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 140
DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
Sbjct: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
Query: 141 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 200
GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
Sbjct: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
Query: 201 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 260
VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
Sbjct: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
Query: 261 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 317
SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
Sbjct: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
>gi|17402865 thiosulfate sulfurtransferase [Homo sapiens]
Length = 297
Score = 377 bits (969), Expect = e-105
Identities = 176/296 (59%), Positives = 224/296 (75%), Gaps = 2/296 (0%)
Query: 21 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 80
M L RALVS +W+AE++R + G L++LDASWY P R+AR+E+ ERH+PGA+FF
Sbjct: 1 MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGT-REARKEYLERHVPGASFF 59
Query: 81 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 140
DI++C D SPY+ MLP FAEY GRLG+ THVV+YD G + APRVWWMFR F
Sbjct: 60 DIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVF 119
Query: 141 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 200
GH VS+L+GG R+WL++ P++S S+P PA F+A LD + +KTYE + ENLES+RFQ+
Sbjct: 120 GHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQL 179
Query: 201 VDSRATGRFRGTEPEP-RDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD 259
VDSR+ GRF GTEPEP G++ GHI G VN+PF DFL+++G EK PEE+R LFQ KKVD
Sbjct: 180 VDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVD 239
Query: 260 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGK 315
LS+PL+ATC GVTACHVAL AYLCGKPDV +YDGSW EW+ RA PE +S+G+ +
Sbjct: 240 LSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPPESRVSQGKSE 295
>gi|163965377 putative thiosulfate sulfurtransferase KAT isoform 1
[Homo sapiens]
Length = 115
Score = 36.2 bits (82), Expect = 0.039
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 205 ATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL-SKP 263
A+GR R + R+ G IPG +NIP ++ + L+ P + L+ +K L +
Sbjct: 17 ASGRARLFDVRSREEAAAGTIPGALNIPVSEL--ESALQMEPAAFQALYSAEKPKLEDEH 74
Query: 264 LVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEW 299
LV C G A G Y G++ EW
Sbjct: 75 LVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREW 110
>gi|47716687 zinc finger protein 167 isoform 1 [Homo sapiens]
Length = 754
Score = 32.7 bits (73), Expect = 0.43
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 145 VSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSR 204
+S+L G LR W++ + P S ++ +F+ L + E++ + + ++
Sbjct: 103 LSILPGELRTWVQLHHPESGEEAVAVVEDFQRHLSGS-----EEVSAPAQKQEMHFEETT 157
Query: 205 ATGRFRGTEPE--------PRDGIEPGHIPGTVNIPFTDF 236
A G + + P P +EP + PGT ++P DF
Sbjct: 158 ALGTTKESPPTSPLSGGSAPGAHLEPPYDPGTHHLPSGDF 197
>gi|47716685 zinc finger protein 167 isoform 2 [Homo sapiens]
Length = 276
Score = 32.7 bits (73), Expect = 0.43
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 145 VSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSR 204
+S+L G LR W++ + P S ++ +F+ L + E++ + + ++
Sbjct: 103 LSILPGELRTWVQLHHPESGEEAVAVVEDFQRHLSGS-----EEVSAPAQKQEMHFEETT 157
Query: 205 ATGRFRGTEPE--------PRDGIEPGHIPGTVNIPFTDF 236
A G + + P P +EP + PGT ++P DF
Sbjct: 158 ALGTTKESPPTSPLSGGSAPGAHLEPPYDPGTHHLPSGDF 197
>gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens]
Length = 2296
Score = 31.6 bits (70), Expect = 0.97
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 163 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 222
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582
Query: 223 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTA 274
G P ++ EGL+ + E + ++ + S+PLV T + + A
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTTIPA 1634
>gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens]
Length = 2176
Score = 31.6 bits (70), Expect = 0.97
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 163 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 222
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582
Query: 223 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTA 274
G P ++ EGL+ + E + ++ + S+PLV T + + A
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTTIPA 1634
>gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]
Length = 2355
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 163 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 222
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582
Query: 223 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 272
G P ++ EGL+ + E + ++ + S+PLV T + +
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1632
>gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]
Length = 2477
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 163 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 222
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1618 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1673
Query: 223 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 272
G P ++ EGL+ + E + ++ + S+PLV T + +
Sbjct: 1674 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1723
>gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]
Length = 2330
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 163 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 222
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582
Query: 223 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 272
G P ++ EGL+ + E + ++ + S+PLV T + +
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1632
>gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]
Length = 2421
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 163 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 222
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1618 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1673
Query: 223 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 272
G P ++ EGL+ + E + ++ + S+PLV T + +
Sbjct: 1674 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1723
>gi|163965371 putative thiosulfate sulfurtransferase KAT isoform 3
[Homo sapiens]
Length = 109
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 205 ATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL-SKP 263
A+GR R + R+ G IPG +NIP ++ + L+ P + L+ +K L +
Sbjct: 17 ASGRARLFDVRSREEAAAGTIPGALNIPVSEL--ESALQMEPAAFQALYSAEKPKLEDEH 74
Query: 264 LVATCGSG 271
LV C G
Sbjct: 75 LVFFCQMG 82
>gi|7661862 protein phosphatase 1F [Homo sapiens]
Length = 454
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 31 VSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTS 90
V+ QW + A RA Q L+ R+ RR+ E+RH+ +F + SD +
Sbjct: 136 VAGQWQKQVPLAARASQRQWLVSIHAI-----RNTRRKMEDRHVSLPSFNQLFGLSDPVN 190
Query: 91 PYDHMLPGAEHFAEYAGRLGVGAATHVVIY 120
+FA + G GV AA + ++
Sbjct: 191 --------RAYFAVFDGHGGVDAARYAAVH 212
>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 30.0 bits (66), Expect = 2.8
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 68 EFEERHIPGAAFFDIDQCSDRTSPYDHM--LPGAEHFAEYAGRLGVGAATHVVIYDASDQ 125
E++E I GAAF C D T+ + G E + A GA +V+YD ++Q
Sbjct: 47 EYQESTI-GAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQ 105
Query: 126 GLYSAPRVW 134
++ + W
Sbjct: 106 ETFARAKTW 114
>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
Length = 1406
Score = 29.3 bits (64), Expect = 4.8
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 211 GTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLF-QEKKVDL-SKPLVATC 268
GTE +G+ GH+P + PFT ++ + E+ L QE + L PL+ C
Sbjct: 848 GTEKNFTNGMVNGHMPSLPDSPFTGYIIAVHRKMMRTELYFLSPQENRPSLFGMPLIVPC 907
Query: 269 GSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARP 305
H K D +YD W++ ARP
Sbjct: 908 -----TVHTR-------KKD--LYDAVWIQVSWLARP 930
>gi|85797660 limkain b1 [Homo sapiens]
Length = 1742
Score = 29.3 bits (64), Expect = 4.8
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 12/152 (7%)
Query: 120 YDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLD 179
+ + ++ L + P+V W+ + GH + +L ++ L +L LS + P+E L+
Sbjct: 1530 HSSVEELLGAIPQVVWI-KGHGHKRIVVLKNDMKSRL-SSLSLSPANHENQPSEGERILE 1587
Query: 180 PAFIKTYEDIK--------ENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNI 231
T ++K + E ++ D P P P P V +
Sbjct: 1588 VPESHTASELKLGADGSGPSHTEQELLRLTDDSPVDLL--CAPVPSCLPSPQLRPDPVIL 1645
Query: 232 PFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKP 263
D + E + P EI L QE+K+++ P
Sbjct: 1646 QSADLIQFEERPQEPSEIMILNQEEKMEIPIP 1677
>gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]
Length = 1011
Score = 28.9 bits (63), Expect = 6.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 184 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 232
KT + +K + E + T +F + P P + GHIP + +P
Sbjct: 721 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 769
>gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]
Length = 1073
Score = 28.9 bits (63), Expect = 6.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 184 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 232
KT + +K + E + T +F + P P + GHIP + +P
Sbjct: 783 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 831
>gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]
Length = 1017
Score = 28.9 bits (63), Expect = 6.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 184 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 232
KT + +K + E + T +F + P P + GHIP + +P
Sbjct: 727 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 775
>gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
Length = 998
Score = 28.9 bits (63), Expect = 6.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 184 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 232
KT + +K + E + T +F + P P + GHIP + +P
Sbjct: 708 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 756
>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 28.9 bits (63), Expect = 6.3
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 139 AFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEF 174
+FGH + S GLR W Q LP +SG QP PA F
Sbjct: 157 SFGHFSPSQTYEGLRAWTEQ-LPKASGPPQP-PAFF 190
>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 28.9 bits (63), Expect = 6.3
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 139 AFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEF 174
+FGH + S GLR W Q LP +SG QP PA F
Sbjct: 157 SFGHFSPSQTYEGLRAWTEQ-LPKASGPPQP-PAFF 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,989,561
Number of Sequences: 37866
Number of extensions: 678442
Number of successful extensions: 1630
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1617
Number of HSP's gapped (non-prelim): 25
length of query: 317
length of database: 18,247,518
effective HSP length: 102
effective length of query: 215
effective length of database: 14,385,186
effective search space: 3092814990
effective search space used: 3092814990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.