Guide to the Human Genome
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Name: LOC729898 Sequence: fasta or formatted (136aa) NCBI GI: 113414298
Description:

PREDICTED: similar to zinc finger and BTB domain containing 8 opposite strand

Not currently referenced in the text

Other entries for this name:
alt mRNA {136aa} PREDICTED: similar to zinc finger and BTB domain containing 8 opp...
alt mRNA {136aa} PREDICTED: similar to zinc finger and BTB domain containing 8 opp...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         12           1
 C cysteine            0.7          1           1
 D aspartate           6.6          9           1
 E glutamate           9.6         13           2
 F phenylalanine       6.6          9           2
 G glycine             5.9          8           1
 H histidine           2.2          3           1
 I isoleucine          2.9          4           1
 K lysine              3.7          5           1
 L leucine             8.1         11           2
 M methionine          2.9          4           1
 N asparagine          5.1          7           2
 P proline             3.7          5           2
 Q glutamine           5.9          8           1
 R arginine            4.4          6           2
 S serine              3.7          5           2
 T threonine           6.6          9           1
 V valine              6.6          9           1
 W tryptophan          1.5          2           1
 Y tyrosine            4.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger and BTB domain co... 
LOC729898             1.000   PREDICTED: similar to zinc finger and BTB domain co...
LOC729898             1.000   PREDICTED: similar to zinc finger and BTB domain co...
ZBTB8OS               0.773   zinc finger and BTB domain containing 8 opposite str...
LOC729566             0.770   PREDICTED: similar to zinc finger and BTB domain co...
DCAF6                 0.016   IQ motif and WD repeats 1 isoform b 
DCAF6                 0.016   IQ motif and WD repeats 1 isoform a 
CSF2RB                0.012   colony stimulating factor 2 receptor, beta precursor ...
FAM167B               0.012   hypothetical protein LOC84734 
WT1                   0.008   Wilms tumor 1 isoform D 
WT1                   0.008   Wilms tumor 1 isoform C 
WT1                   0.008   Wilms tumor 1 isoform B 
WT1                   0.008   Wilms tumor 1 isoform A 
NAP1L2                0.004   nucleosome assembly protein 1-like 2 
LOC129293             0.004   hypothetical protein LOC129293 
SAMD7                 0.004   sterile alpha motif domain containing 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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