Search of human proteins with 187608312

Search of human proteins with 187608312

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|187608312 cyclin N-terminal domain containing 1 [Homo
sapiens]
         (330 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|187608312 cyclin N-terminal domain containing 1 [Homo sapiens]     643   0.0  
gi|118572588 cyclin F [Homo sapiens]                                   37   0.024
gi|197276676 cyclin J isoform 3 [Homo sapiens]                         36   0.054
gi|197276674 cyclin J isoform 1 [Homo sapiens]                         36   0.054
gi|40254889 cyclin J isoform 2 [Homo sapiens]                          36   0.054
gi|9945320 cyclin L1 [Homo sapiens]                                    35   0.071
gi|14327896 cyclin B1 [Homo sapiens]                                   33   0.27 
gi|4757930 cyclin B2 [Homo sapiens]                                    32   1.0  
gi|94680985 cyclin J-like [Homo sapiens]                               32   1.0  
gi|52317166 olfactory receptor, family 1, subfamily N, member 2 ...    30   2.3  
gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Ho...    29   5.1  
gi|4502617 cyclin D2 [Homo sapiens]                                    29   5.1  
gi|89886237 cyclin I family, member 2 [Homo sapiens]                   29   6.6  
gi|30795204 histone deacetylase 9 isoform 5 [Homo sapiens]             28   8.6  

>gi|187608312 cyclin N-terminal domain containing 1 [Homo sapiens]
          Length = 330

 Score =  643 bits (1659), Expect = 0.0
 Identities = 330/330 (100%), Positives = 330/330 (100%)

Query: 1   MDGPMRPRSASLVDFQFGVVATETIEDALLHLAQQNEQAVREASGRLGRFREPQIVEFVF 60
           MDGPMRPRSASLVDFQFGVVATETIEDALLHLAQQNEQAVREASGRLGRFREPQIVEFVF
Sbjct: 1   MDGPMRPRSASLVDFQFGVVATETIEDALLHLAQQNEQAVREASGRLGRFREPQIVEFVF 60

Query: 61  LLSEQWCLEKSVSYQAVEILERFMVKQAENICRQATIQPRDNKRESQNWRALKQQLVNKF 120
           LLSEQWCLEKSVSYQAVEILERFMVKQAENICRQATIQPRDNKRESQNWRALKQQLVNKF
Sbjct: 61  LLSEQWCLEKSVSYQAVEILERFMVKQAENICRQATIQPRDNKRESQNWRALKQQLVNKF 120

Query: 121 TLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLP 180
           TLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLP
Sbjct: 121 TLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLP 180

Query: 181 TPLAYVETLLEVLGYNGCLVPAMRLHATCLTLLDLVYLLHEPIYESLLRASIENSTPSQL 240
           TPLAYVETLLEVLGYNGCLVPAMRLHATCLTLLDLVYLLHEPIYESLLRASIENSTPSQL
Sbjct: 181 TPLAYVETLLEVLGYNGCLVPAMRLHATCLTLLDLVYLLHEPIYESLLRASIENSTPSQL 240

Query: 241 QGEKFTSVKEDFMLLAVGIIAASAFIQNHECWSQVVGHLQSITGIALASIAEFSYAILTH 300
           QGEKFTSVKEDFMLLAVGIIAASAFIQNHECWSQVVGHLQSITGIALASIAEFSYAILTH
Sbjct: 241 QGEKFTSVKEDFMLLAVGIIAASAFIQNHECWSQVVGHLQSITGIALASIAEFSYAILTH 300

Query: 301 GVGANTPGRQQSIPPHLAARALKTVASSNT 330
           GVGANTPGRQQSIPPHLAARALKTVASSNT
Sbjct: 301 GVGANTPGRQQSIPPHLAARALKTVASSNT 330


>gi|118572588 cyclin F [Homo sapiens]
          Length = 786

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 29/193 (15%)

Query: 50  FREPQIVEFVFLLSEQWCLEKSVSYQAVE-ILERFMVKQAENICRQATIQPRDNKRESQN 108
           F+  Q V    + S Q  L  ++ Y  ++ ++E   +K   ++C   T++  D       
Sbjct: 287 FQASQAVSKQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVD------- 339

Query: 109 WRALKQQLVNKFTLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELD 168
            R L+++LV ++ L+L+    +     F +K I  I    +L    Y +  E+L+    +
Sbjct: 340 -RYLRRRLVPRYRLQLLGIACMVICTRFISKEILTIREAVWLTDNTYKY--EDLVRMMGE 396

Query: 169 VLKSLNFRINLPTPLAYVETLLEVLGYNGCLVPA-MRLHATCLTLLDLVYLLHEPIYESL 227
           ++ +L  +I +PT + Y E LL        LVP  +R    C  L +L          SL
Sbjct: 397 IVSALEGKIRVPTVVDYKEVLL-------TLVPVELRTQHLCSFLCEL----------SL 439

Query: 228 LRASIENSTPSQL 240
           L  S+    P++L
Sbjct: 440 LHTSLSAYAPARL 452


>gi|197276676 cyclin J isoform 3 [Homo sapiens]
          Length = 371

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 117 VNKFTLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLH---TKEELLESELDVLKSL 173
           + +  L  +SC+ LASK   +   +  +  LN L  +  ++   TK+ LL  EL +L++ 
Sbjct: 79  IQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLLETF 138

Query: 174 NFRINLPTPLAYVETLL 190
            + + LPT   ++E  L
Sbjct: 139 QWNLCLPTAAHFIEYYL 155


>gi|197276674 cyclin J isoform 1 [Homo sapiens]
          Length = 383

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 117 VNKFTLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLH---TKEELLESELDVLKSL 173
           + +  L  +SC+ LASK   +   +  +  LN L  +  ++   TK+ LL  EL +L++ 
Sbjct: 79  IQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLLETF 138

Query: 174 NFRINLPTPLAYVETLL 190
            + + LPT   ++E  L
Sbjct: 139 QWNLCLPTAAHFIEYYL 155


>gi|40254889 cyclin J isoform 2 [Homo sapiens]
          Length = 372

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 117 VNKFTLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLH---TKEELLESELDVLKSL 173
           + +  L  +SC+ LASK   +   +  +  LN L  +  ++   TK+ LL  EL +L++ 
Sbjct: 79  IQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLLETF 138

Query: 174 NFRINLPTPLAYVETLL 190
            + + LPT   ++E  L
Sbjct: 139 QWNLCLPTAAHFIEYYL 155


>gi|9945320 cyclin L1 [Homo sapiens]
          Length = 526

 Score = 35.4 bits (80), Expect = 0.071
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 113 KQQLVNKFTLRLVSCVQLASKLSFRNKIISN-ITVLNFLQAL-------------GYLHT 158
           K  + + F +  ++C+ LASK+    + I + I V + L+ L              Y++T
Sbjct: 118 KSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINT 177

Query: 159 KEELLESELDVLKSLNFRINLPTPLAYVETLLEVL 193
           K +++++E  VLK L F +++  P   +   L+VL
Sbjct: 178 KNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVL 212


>gi|14327896 cyclin B1 [Homo sapiens]
          Length = 433

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 42/175 (24%)

Query: 20  VATETIEDALLHLAQ-QNEQAVR-------EASGRLGRFREPQIVEFVFLLSEQWCLEKS 71
           + +E ++D   +L Q + EQAVR       E +G +       +++++  +  ++ L + 
Sbjct: 166 LCSEYVKDIYAYLRQLEEEQAVRPKYLLGREVTGNMRAI----LIDWLVQVQMKFRLLQE 221

Query: 72  VSYQAVEILERFMVKQAENICRQATIQPRDNKRESQNWRALKQQLVNKFTLRLVSCVQLA 131
             Y  V I++RFM    +N C                        V K  L+LV    + 
Sbjct: 222 TMYMTVSIIDRFM----QNNC------------------------VPKKMLQLVGVTAMF 253

Query: 132 SKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLAYV 186
               +       I    F+    Y  TK ++ + E+ +L++LNF +  P PL ++
Sbjct: 254 IASKYEEMYPPEIGDFAFVTDNTY--TKHQIRQMEMKILRALNFGLGRPLPLHFL 306


>gi|4757930 cyclin B2 [Homo sapiens]
          Length = 398

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 110 RALKQQLVNKFTLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDV 169
           R L+ Q V++  L+LV    L     +      NI   +F+      +T  ++ E E  +
Sbjct: 196 RFLQVQPVSRKKLQLVGITALLLASKYEEMFSPNIE--DFVYITDNAYTSSQIREMETLI 253

Query: 170 LKSLNFRINLPTPLAYV 186
           LK L F +  P PL ++
Sbjct: 254 LKELKFELGRPLPLHFL 270


>gi|94680985 cyclin J-like [Homo sapiens]
          Length = 435

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 141 ISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLAYVETLL 190
           +  I     L +  +  TK+ELL +EL +L++ ++ + LPTP  +++  L
Sbjct: 154 LEQINSTRILSSQNFTLTKKELLSTELLLLEAFSWNLCLPTPAHFLDYYL 203


>gi|52317166 olfactory receptor, family 1, subfamily N, member 2
           [Homo sapiens]
          Length = 330

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 140 IISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLAYVETLLEVLGYNGCL 199
           ++ N+ ++  + +  +LHT      + L +  +     ++P  LA + T  +++ Y+GCL
Sbjct: 56  MVGNLLIILAISSDPHLHTPMYFFLANLSLTDACFTSASIPKMLANIHTQSQIISYSGCL 115


>gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Homo
           sapiens]
          Length = 307

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 117 VNKFTLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFR 176
           +++  L  V+C+ +A K+     ++     L  L A  +  ++ ELL +E  +L  L+FR
Sbjct: 147 LHRLQLLGVACLFVACKME--ECVLPEPAFLCLLSADSF--SRAELLRAERRILSRLDFR 202

Query: 177 INLPTPLAYVETLLEVLGYNGCLVPAMRLHATCLTLLDLV 216
           ++ P PL  +  L  + G +    P + L AT    L L+
Sbjct: 203 LHHPGPLLCLGLLAALAGSS----PQVMLLATYFLELSLL 238


>gi|4502617 cyclin D2 [Homo sapiens]
          Length = 289

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 127 CVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLAYV 186
           C+ LASKL    K  S +T              +ELLE EL VL  L + +   TP  ++
Sbjct: 105 CMFLASKL----KETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFI 160

Query: 187 ETLLEVLGYNGCLVPAMRLHA---TCLTLLDLVYLLHEP 222
           E +L  L      +  +R HA     L   D  + ++ P
Sbjct: 161 EHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPP 199


>gi|89886237 cyclin I family, member 2 [Homo sapiens]
          Length = 369

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 125 VSCVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLA 184
           ++ ++LA+K++   + I  +   +F +  G  ++  ELL  EL +L  L++ + + TPL 
Sbjct: 197 ITSLRLAAKVNEEEEFIPQVK--DFTKHYGSDYSPNELLRMELAILDRLHWDLYIGTPLD 254

Query: 185 YV 186
           ++
Sbjct: 255 FL 256


>gi|30795204 histone deacetylase 9 isoform 5 [Homo sapiens]
          Length = 1069

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 51  REPQIVEFVFLLSEQWCLEKSVSYQAVEILERFMVKQAENICRQATIQPRDNKRESQNWR 110
           RE Q+ + + L+ +Q  ++K +      ++  F  KQ EN+ RQ   Q +++ +  Q   
Sbjct: 42  REKQLQQELLLIQQQQQIQKQL------LIAEFQ-KQHENLTRQHQAQLQEHIKLQQELL 94

Query: 111 ALKQQ 115
           A+KQQ
Sbjct: 95  AIKQQ 99


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,969,303
Number of Sequences: 37866
Number of extensions: 412259
Number of successful extensions: 1177
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 15
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.