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Search of human proteins with 103485145
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|103485145 defensin, beta 107A precursor [Homo sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|103485147 defensin, beta 107B precursor [Homo sapiens] 145 7e-36
gi|103485145 defensin, beta 107A precursor [Homo sapiens] 145 7e-36
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|50344744 beta-defensin 108B [Homo sapiens] 31 0.18
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] 29 0.91
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] 29 0.91
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] 29 0.91
gi|22748617 defensin, beta 105A precursor [Homo sapiens] 27 3.5
gi|16905373 beta-defensin 118 [Homo sapiens] 27 3.5
gi|103485141 defensin, beta 105B precursor [Homo sapiens] 27 3.5
>gi|103485147 defensin, beta 107B precursor [Homo sapiens]
Length = 70
Score = 145 bits (366), Expect = 7e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGCRAELA 60
MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGCRAELA
Sbjct: 1 MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGCRAELA 60
Query: 61 PFCCKNRKKH 70
PFCCKNRKKH
Sbjct: 61 PFCCKNRKKH 70
>gi|103485145 defensin, beta 107A precursor [Homo sapiens]
Length = 70
Score = 145 bits (366), Expect = 7e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGCRAELA 60
MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGCRAELA
Sbjct: 1 MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGCRAELA 60
Query: 61 PFCCKNRKKH 70
PFCCKNRKKH
Sbjct: 61 PFCCKNRKKH 70
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1 MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
+ A++I V + A ++Q+ AR I +R G C CL E+ +G C
Sbjct: 7 LSSAVRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 59
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1 MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
+ A++I V + A ++Q+ AR I +R G C CL E+ +G C
Sbjct: 7 LSSAVRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 59
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 5 MKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
M+I V + A ++Q+ AR I +R G C CL E+ +G C
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 49
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 5 MKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
M+I V + A ++Q+ AR I +R G C CL E+ +G C
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 49
>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 5 MKIFVFILAALILLAQIF-QARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
MKI VF+ L I + + A+ M G C EC FE IG C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFC 52
>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 5 MKIFVFILAALILLAQIF-QARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
MKI VF+ L I + + A+ M G C EC FE IG C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFC 52
>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
Length = 61
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 5 MKIFVFILAALILLAQIF-QARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
MKI VF+ L I + + A+ M G C EC FE IG C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFC 52
>gi|22748617 defensin, beta 105A precursor [Homo sapiens]
Length = 78
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 6 KIFVFILAALILLAQI---FQARTAIHRALIS---------KRMEGHCEAECLTFEVKIG 53
K F F+ A +L Q+ QA + S K G C ECL E G
Sbjct: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
Query: 54 GCRAELAPFCCKNR 67
CR CC+ R
Sbjct: 66 NCRLNF--LCCRQR 77
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 5 MKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGCRAELAPFCC 64
MK+ + L L+LL Q+ A + + GHC +C E C+ L C
Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSGEKKCW---NRSGHCRKQCKDGEAVKDTCK-NLRACCI 56
Query: 65 KNRKKH 70
+ + H
Sbjct: 57 PSNEDH 62
>gi|103485141 defensin, beta 105B precursor [Homo sapiens]
Length = 78
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 6 KIFVFILAALILLAQI---FQARTAIHRALIS---------KRMEGHCEAECLTFEVKIG 53
K F F+ A +L Q+ QA + S K G C ECL E G
Sbjct: 6 KTFYFLFAMFFILVQLPSGCQAGLDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDG 65
Query: 54 GCRAELAPFCCKNR 67
CR CC+ R
Sbjct: 66 NCRLNF--LCCRQR 77
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.334 0.142 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,315,861
Number of Sequences: 37866
Number of extensions: 61992
Number of successful extensions: 242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 12
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.