Guide to the Human Genome
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Search of human proteins with 103472015

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|103472015 ubiquitin-conjugating enzyme E2-like isoform b
[Homo sapiens]
         (379 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|103472015 ubiquitin-conjugating enzyme E2-like isoform b [Hom...   756   0.0  
gi|103472011 ubiquitin-conjugating enzyme E2-like isoform a [Hom...   748   0.0  
gi|5454140 tumor susceptibility gene 101 [Homo sapiens]               172   6e-43
gi|221136809 lactate dehydrogenase A-like 6A [Homo sapiens]           162   6e-40
gi|47059044 lactate dehydrogenase A-like 6A [Homo sapiens]            162   6e-40
gi|4557032 L-lactate dehydrogenase B [Homo sapiens]                   154   1e-37
gi|15082234 lactate dehydrogenase A-like 6B [Homo sapiens]            152   6e-37
gi|5031857 L-lactate dehydrogenase A isoform 1 [Homo sapiens]         149   4e-36
gi|9257228 L-lactate dehydrogenase C [Homo sapiens]                   146   3e-35
gi|4504973 L-lactate dehydrogenase C [Homo sapiens]                   146   3e-35
gi|207028494 L-lactate dehydrogenase A isoform 2 [Homo sapiens]        81   2e-15
gi|22202629 programmed cell death 8 isoform 2 [Homo sapiens]           31   2.1  
gi|4757732 programmed cell death 8 isoform 1 [Homo sapiens]            31   2.1  
gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A...    30   4.7  
gi|31077081 frataxin isoform 1 preproprotein [Homo sapiens]            29   6.1  
gi|226437568 apoptosis-inducing factor, mitochondrion-associated...    29   6.1  
gi|65787454 apoptosis-inducing factor, mitochondrion-associated,...    29   6.1  
gi|21389617 apoptosis-inducing factor, mitochondrion-associated,...    29   6.1  

>gi|103472015 ubiquitin-conjugating enzyme E2-like isoform b [Homo
           sapiens]
          Length = 379

 Score =  756 bits (1951), Expect = 0.0
 Identities = 379/379 (100%), Positives = 379/379 (100%)

Query: 1   MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP 60
           MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
Sbjct: 1   MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP 60

Query: 61  VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP 120
           VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
Sbjct: 61  VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP 120

Query: 121 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK 180
           KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
Sbjct: 121 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK 180

Query: 181 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL 240
           TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
Sbjct: 181 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL 240

Query: 241 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT 300
           SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
Sbjct: 241 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT 300

Query: 301 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ 360
           YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
Sbjct: 301 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ 360

Query: 361 EEVVSHTSQVQLSNRDIMI 379
           EEVVSHTSQVQLSNRDIMI
Sbjct: 361 EEVVSHTSQVQLSNRDIMI 379


>gi|103472011 ubiquitin-conjugating enzyme E2-like isoform a [Homo
           sapiens]
          Length = 471

 Score =  748 bits (1932), Expect = 0.0
 Identities = 375/375 (100%), Positives = 375/375 (100%)

Query: 1   MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP 60
           MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP
Sbjct: 1   MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIP 60

Query: 61  VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP 120
           VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP
Sbjct: 61  VMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHP 120

Query: 121 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK 180
           KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK
Sbjct: 121 KSVIVGLIKEMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENK 180

Query: 181 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL 240
           TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL
Sbjct: 181 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL 240

Query: 241 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT 300
           SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT
Sbjct: 241 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMT 300

Query: 301 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ 360
           YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ
Sbjct: 301 YVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQ 360

Query: 361 EEVVSHTSQVQLSNR 375
           EEVVSHTSQVQLSNR
Sbjct: 361 EEVVSHTSQVQLSNR 375


>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
          Length = 390

 Score =  172 bits (435), Expect = 6e-43
 Identities = 76/136 (55%), Positives = 103/136 (75%)

Query: 8   LRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNT 67
           L++++ KYK+RDLTV E  NV   +   K  +D+YVF D S ++L+N TGTIPV Y+GNT
Sbjct: 8   LKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNT 67

Query: 68  YNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVIVGL 127
           YNIPI  W+LD++P+ PPICF+KPT++M I  GKHVDA G+IYLPYL  W HP+S ++GL
Sbjct: 68  YNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL 127

Query: 128 IKEMIAKFQEELPMYS 143
           I+ MI  F +E P++S
Sbjct: 128 IQVMIVVFGDEPPVFS 143


>gi|221136809 lactate dehydrogenase A-like 6A [Homo sapiens]
          Length = 332

 Score =  162 bits (409), Expect = 6e-40
 Identities = 85/194 (43%), Positives = 121/194 (62%), Gaps = 6/194 (3%)

Query: 172 KSWANHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT-KGATMDLE--- 227
           K++A  E    NKI++VG G +G+AC ++I  KG++D LVL+D+ EG  KG TMDL+   
Sbjct: 10  KNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKGETMDLQHGS 69

Query: 228 -IFNLPNVEISKDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQ 285
               +PN+  SKD   +A+S +VI T  +     ++ LD+VQ NV +F+ ++P +  YS 
Sbjct: 70  PFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLMIPNITQYSP 129

Query: 286 HSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWV 345
           H  LL+ + PV+I+TYV WKLS FP NRVIG GCNLDS R +Y I   L   +      +
Sbjct: 130 HCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGIHSESCHGLI 189

Query: 346 IGEQGEDKVLTWSG 359
           +GE G+  V  WSG
Sbjct: 190 LGEHGDSSVPVWSG 203


>gi|47059044 lactate dehydrogenase A-like 6A [Homo sapiens]
          Length = 332

 Score =  162 bits (409), Expect = 6e-40
 Identities = 85/194 (43%), Positives = 121/194 (62%), Gaps = 6/194 (3%)

Query: 172 KSWANHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT-KGATMDLE--- 227
           K++A  E    NKI++VG G +G+AC ++I  KG++D LVL+D+ EG  KG TMDL+   
Sbjct: 10  KNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKGETMDLQHGS 69

Query: 228 -IFNLPNVEISKDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQ 285
               +PN+  SKD   +A+S +VI T  +     ++ LD+VQ NV +F+ ++P +  YS 
Sbjct: 70  PFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLMIPNITQYSP 129

Query: 286 HSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWV 345
           H  LL+ + PV+I+TYV WKLS FP NRVIG GCNLDS R +Y I   L   +      +
Sbjct: 130 HCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGIHSESCHGLI 189

Query: 346 IGEQGEDKVLTWSG 359
           +GE G+  V  WSG
Sbjct: 190 LGEHGDSSVPVWSG 203


>gi|4557032 L-lactate dehydrogenase B [Homo sapiens]
          Length = 334

 Score =  154 bits (390), Expect = 1e-37
 Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 6/183 (3%)

Query: 183 NKITVVGGGELGIACTLAISAKGIADRLVLLD-LSEGTKGATMDLEIFNL----PNVEIS 237
           NKITVVG G++G+AC ++I  K +AD L L+D L +  KG  MDL+  +L    P +   
Sbjct: 22  NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 81

Query: 238 KDLSASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPV 296
           KD S +A+SK+V+ T        +S L++VQ NV++F+ ++P +  YS   +++V S PV
Sbjct: 82  KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPV 141

Query: 297 EIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLT 356
           +I+TYVTWKLS  P +RVIG GCNLDS R +Y++   L    S    W++GE G+  V  
Sbjct: 142 DILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAV 201

Query: 357 WSG 359
           WSG
Sbjct: 202 WSG 204


>gi|15082234 lactate dehydrogenase A-like 6B [Homo sapiens]
          Length = 381

 Score =  152 bits (383), Expect = 6e-37
 Identities = 74/183 (40%), Positives = 116/183 (63%), Gaps = 6/183 (3%)

Query: 183 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT-KGATMDLE----IFNLPNVEIS 237
           +K++++G G +G+AC ++I  KG++D L L+DL E   KG TMDL+       +PN+  S
Sbjct: 70  SKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKGETMDLQHGSPFTKMPNIVCS 129

Query: 238 KDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPV 296
           KD   +A+S +VI T  +     ++ L++VQ NV +F+ ++ ++  YS H  L++ S PV
Sbjct: 130 KDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLIIVSNPV 189

Query: 297 EIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLT 356
           +I+TYV WKLS FP NR+IG GCNLD+ R +++I   L   +     W++GE G+  V  
Sbjct: 190 DILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILGEHGDSSVPV 249

Query: 357 WSG 359
           WSG
Sbjct: 250 WSG 252


>gi|5031857 L-lactate dehydrogenase A isoform 1 [Homo sapiens]
          Length = 332

 Score =  149 bits (376), Expect = 4e-36
 Identities = 82/188 (43%), Positives = 116/188 (61%), Gaps = 6/188 (3%)

Query: 178 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT-KGATMDLEIFNL----P 232
           E    NKITVVG G +G+AC ++I  K +AD L L+D+ E   KG  MDL+  +L    P
Sbjct: 16  EQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTP 75

Query: 233 NVEISKDLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQHSVLLV 291
            +   KD + +A+SK+VI T  +     +S L++VQ NV++F+ ++P +  YS +  LL+
Sbjct: 76  KIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLI 135

Query: 292 ASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGE 351
            S PV+I+TYV WK+S FP NRVIG GCNLDS R +Y++   L         WV+GE G+
Sbjct: 136 VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGD 195

Query: 352 DKVLTWSG 359
             V  WSG
Sbjct: 196 SSVPVWSG 203


>gi|9257228 L-lactate dehydrogenase C [Homo sapiens]
          Length = 332

 Score =  146 bits (368), Expect = 3e-35
 Identities = 76/182 (41%), Positives = 112/182 (61%), Gaps = 6/182 (3%)

Query: 184 KITVVGGGELGIACTLAISAKGIADRLVLLDLS-EGTKGATMDLE----IFNLPNVEISK 238
           KIT+VG G +G+AC ++I  K +AD L L+D++ +  KG  MDL+     F+   +   K
Sbjct: 22  KITIVGTGAVGMACAISILLKDLADELALVDVALDKLKGEMMDLQHGSLFFSTSKITSGK 81

Query: 239 DLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE 297
           D S SA+S++VI T  +     ++ L +VQ NV + ++++PA+ HYS    +LV S PV+
Sbjct: 82  DYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKILVVSNPVD 141

Query: 298 IMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTW 357
           I+TY+ WK+S  P  RVIG GCNLDS R +Y+I   L    +    W+IGE G+  V  W
Sbjct: 142 ILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLW 201

Query: 358 SG 359
           SG
Sbjct: 202 SG 203


>gi|4504973 L-lactate dehydrogenase C [Homo sapiens]
          Length = 332

 Score =  146 bits (368), Expect = 3e-35
 Identities = 76/182 (41%), Positives = 112/182 (61%), Gaps = 6/182 (3%)

Query: 184 KITVVGGGELGIACTLAISAKGIADRLVLLDLS-EGTKGATMDLE----IFNLPNVEISK 238
           KIT+VG G +G+AC ++I  K +AD L L+D++ +  KG  MDL+     F+   +   K
Sbjct: 22  KITIVGTGAVGMACAISILLKDLADELALVDVALDKLKGEMMDLQHGSLFFSTSKITSGK 81

Query: 239 DLSASAHSKVVIFTVNSLGSS-QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE 297
           D S SA+S++VI T  +     ++ L +VQ NV + ++++PA+ HYS    +LV S PV+
Sbjct: 82  DYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKILVVSNPVD 141

Query: 298 IMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTW 357
           I+TY+ WK+S  P  RVIG GCNLDS R +Y+I   L    +    W+IGE G+  V  W
Sbjct: 142 ILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEHGDSSVPLW 201

Query: 358 SG 359
           SG
Sbjct: 202 SG 203


>gi|207028494 L-lactate dehydrogenase A isoform 2 [Homo sapiens]
          Length = 274

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 52/182 (28%)

Query: 178 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS 237
           E    NKITVVG G +G+AC ++I  K +AD                +L + ++   ++ 
Sbjct: 16  EQTPQNKITVVGVGAVGMACAISILMKDLAD----------------ELALVDVIEDKLK 59

Query: 238 KDLSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE 297
            ++    H  + + T                                      + S  V+
Sbjct: 60  GEMMDLQHGSLFLRTPK------------------------------------IVSGKVD 83

Query: 298 IMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTW 357
           I+TYV WK+S FP NRVIG GCNLDS R +Y++   L         WV+GE G+  V  W
Sbjct: 84  ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 143

Query: 358 SG 359
           SG
Sbjct: 144 SG 145


>gi|22202629 programmed cell death 8 isoform 2 [Homo sapiens]
          Length = 609

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 179 NKTVNKITVVGGGELG--IACTLAISAKGIADRLVLLDLSEGTKG 221
           ++ V  IT++GGG LG  +AC L   A+ +   ++ L   +G  G
Sbjct: 293 SREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG 337


>gi|4757732 programmed cell death 8 isoform 1 [Homo sapiens]
          Length = 613

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 179 NKTVNKITVVGGGELG--IACTLAISAKGIADRLVLLDLSEGTKG 221
           ++ V  IT++GGG LG  +AC L   A+ +   ++ L   +G  G
Sbjct: 297 SREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG 341


>gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A
           dehydrogenase [Homo sapiens]
          Length = 723

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 130 EMIAKFQEELPMYSLSSSDEARQVDLLAYIAKITEGVSDTNSKSWANHENKTVNKITVVG 189
           E+  K +EEL +Y L S  +AR +    +  +     S  +  SW     + V+ + VVG
Sbjct: 246 EVGIKKEEELFLYLLQSG-QARALQYAFFAERKANKWSTPSGASWKTASARPVSSVGVVG 304

Query: 190 GGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDLSASAH 245
            G +G    ++ +   I   ++ +D S+  + AT +  I ++   E SK +  S H
Sbjct: 305 LGTMGRGIVISFARARIP--VIAVD-SDKNQLATANKMITSVLEKEASK-MQQSGH 356


>gi|31077081 frataxin isoform 1 preproprotein [Homo sapiens]
          Length = 210

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 331 TNVLKAQTSGKEVWVIGEQGEDKVLTWSGQEEVVSH 366
           T V+  QT  K++W+       K   W+G+  V SH
Sbjct: 142 TYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSH 177


>gi|226437568 apoptosis-inducing factor, mitochondrion-associated, 3
           isoform 3 [Homo sapiens]
          Length = 604

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 185 ITVVGGGELGIACTLAISAKGIADRLVLLDL 215
           + +VG G  G+ C   +  +G +DR+VL  L
Sbjct: 203 VLIVGAGAAGLVCAETLRQEGFSDRIVLCTL 233


>gi|65787454 apoptosis-inducing factor, mitochondrion-associated, 3
           isoform 2 [Homo sapiens]
          Length = 598

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 185 ITVVGGGELGIACTLAISAKGIADRLVLLDL 215
           + +VG G  G+ C   +  +G +DR+VL  L
Sbjct: 197 VLIVGAGAAGLVCAETLRQEGFSDRIVLCTL 227


>gi|21389617 apoptosis-inducing factor, mitochondrion-associated, 3
           isoform 1 [Homo sapiens]
          Length = 605

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 185 ITVVGGGELGIACTLAISAKGIADRLVLLDL 215
           + +VG G  G+ C   +  +G +DR+VL  L
Sbjct: 197 VLIVGAGAAGLVCAETLRQEGFSDRIVLCTL 227


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,156,132
Number of Sequences: 37866
Number of extensions: 540193
Number of successful extensions: 1176
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 19
length of query: 379
length of database: 18,247,518
effective HSP length: 104
effective length of query: 275
effective length of database: 14,309,454
effective search space: 3935099850
effective search space used: 3935099850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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