Search of human proteins with 10092689

Search of human proteins with 10092689

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10092689 LYR motif containing 2 [Homo sapiens]
         (88 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10092689 LYR motif containing 2 [Homo sapiens]                     172   5e-44
gi|115430227 LYR motif containing 5 [Homo sapiens]                     40   3e-04
gi|190194370 LYR motif containing 1 [Homo sapiens]                     35   0.017
gi|190194368 LYR motif containing 1 [Homo sapiens]                     35   0.017
gi|10092683 LYR motif containing 1 [Homo sapiens]                      35   0.017
gi|38570054 LYR motif containing 4 [Homo sapiens]                      31   0.24 
gi|34878777 ring finger protein 20 [Homo sapiens]                      31   0.24 
gi|9910180 ACN9 homolog [Homo sapiens]                                 31   0.24 
gi|116008154 hypothetical protein LOC201229 [Homo sapiens]             28   1.2  
gi|155722998 solute carrier family 4, sodium bicarbonate transpo...    28   2.0  
gi|115529449 upstream binding transcription factor, RNA polymera...    27   3.5  
gi|115529451 upstream binding transcription factor, RNA polymera...    27   3.5  
gi|7657671 upstream binding transcription factor, RNA polymerase...    27   3.5  
gi|34304360 nephrocystin 3 [Homo sapiens]                              26   5.9  
gi|212549536 regulator of G-protein signaling like 1 [Homo sapiens]    26   5.9  
gi|197276647 leucine rich repeat (in FLII) interacting protein 2...    26   7.7  
gi|8923224 leucine rich repeat (in FLII) interacting protein 2 i...    26   7.7  

>gi|10092689 LYR motif containing 2 [Homo sapiens]
          Length = 88

 Score =  172 bits (436), Expect = 5e-44
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MAASRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSAT 60
          MAASRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSAT
Sbjct: 1  MAASRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSAT 60

Query: 61 EEDTIRMMITQGNMQLKELEKTLALAKS 88
          EEDTIRMMITQGNMQLKELEKTLALAKS
Sbjct: 61 EEDTIRMMITQGNMQLKELEKTLALAKS 88


>gi|115430227 LYR motif containing 5 [Homo sapiens]
          Length = 90

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19 RQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEEDTIRMMITQGNMQLKE 78
          R +VL LY+ +L   R  P  +D  Y K   +  F +NK     + I+ +I QG   +KE
Sbjct: 8  RGEVLKLYKNLLYLGRDYPKGAD--YFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKE 65

Query: 79 LEKTLALAK 87
          LE    L K
Sbjct: 66 LEALYFLRK 74


>gi|190194370 LYR motif containing 1 [Homo sapiens]
          Length = 122

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 19 RQQVLLLYRRILQTIRQVPNDS--------DRKYLKDWAREEFRRNKSATEEDTIRMMIT 70
          RQ+VL LYR I +  R+    S        +++Y+ + AR  FR+NK+ T+ D I+  I 
Sbjct: 6  RQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQCID 65

Query: 71 Q 71
          +
Sbjct: 66 E 66


>gi|190194368 LYR motif containing 1 [Homo sapiens]
          Length = 122

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 19 RQQVLLLYRRILQTIRQVPNDS--------DRKYLKDWAREEFRRNKSATEEDTIRMMIT 70
          RQ+VL LYR I +  R+    S        +++Y+ + AR  FR+NK+ T+ D I+  I 
Sbjct: 6  RQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQCID 65

Query: 71 Q 71
          +
Sbjct: 66 E 66


>gi|10092683 LYR motif containing 1 [Homo sapiens]
          Length = 122

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 19 RQQVLLLYRRILQTIRQVPNDS--------DRKYLKDWAREEFRRNKSATEEDTIRMMIT 70
          RQ+VL LYR I +  R+    S        +++Y+ + AR  FR+NK+ T+ D I+  I 
Sbjct: 6  RQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQCID 65

Query: 71 Q 71
          +
Sbjct: 66 E 66


>gi|38570054 LYR motif containing 4 [Homo sapiens]
          Length = 91

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 17/69 (24%), Positives = 34/69 (49%)

Query: 19 RQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEEDTIRMMITQGNMQLKE 78
          R QVL LYR +L+  ++    + R Y     R+ FR NK+  +   I+ ++ +    L  
Sbjct: 6  RAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLGV 65

Query: 79 LEKTLALAK 87
          + + + + +
Sbjct: 66 IRRQVHIGQ 74


>gi|34878777 ring finger protein 20 [Homo sapiens]
          Length = 975

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 42  RKYLKDWAREEFRRNKSATEEDTIRMMITQGNMQLKELEKTLALAK 87
           R+ LKD   +E + NK   +ED +R  I     Q++ L+K LA+AK
Sbjct: 678 RQRLKDLEDKEKKENKKMADEDALR-KIRAVEEQIEYLQKKLAMAK 722


>gi|9910180 ACN9 homolog [Homo sapiens]
          Length = 125

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 21 QVLLLYRRILQTIRQVPNDSDRKYLKD-WAREEFRRNKSATEEDTIRMM 68
          +V  LY+R+LQ  R +P   D K L D + ++EFRR+K+   ++  R +
Sbjct: 8  RVRALYKRVLQLHRVLP--PDLKSLGDQYVKDEFRRHKTVGSDEAQRFL 54


>gi|116008154 hypothetical protein LOC201229 [Homo sapiens]
          Length = 78

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 9  ATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEEDTIRMM 68
          A L   + VRR   L LYR +L+  +Q+P    +++ K   R+ FR +      + I+ +
Sbjct: 2  APLPGAELVRRP--LQLYRYLLRCCQQLPTKGIQQHYKHAVRQSFRVHSDEDNPERIQQI 59

Query: 69 I 69
          I
Sbjct: 60 I 60


>gi|155722998 solute carrier family 4, sodium bicarbonate
            transporter-like, member 10 [Homo sapiens]
          Length = 1088

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 2    AASRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATE 61
            AA   P   L L  FVR+   LL  +R L  +  +  +S +K L+D  +EE +   +  +
Sbjct: 975  AAIVFPMMVLALV-FVRKLMDLLFTKRELSWLDDLMPESKKKKLEDAEKEEEQSMLAMED 1033

Query: 62   EDTIRM 67
            E T+++
Sbjct: 1034 EGTVQL 1039


>gi|115529449 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 34  RQVPNDSDRKYLKDWARE--EFRRNKSATEEDTIRMMITQGNMQLKELEKT 82
           +++P     KY++D+ RE  EF RN +   ED   ++       + E  KT
Sbjct: 151 KELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKT 201


>gi|115529451 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 34  RQVPNDSDRKYLKDWARE--EFRRNKSATEEDTIRMMITQGNMQLKELEKT 82
           +++P     KY++D+ RE  EF RN +   ED   ++       + E  KT
Sbjct: 151 KELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKT 201


>gi|7657671 upstream binding transcription factor, RNA polymerase I
           isoform a [Homo sapiens]
          Length = 764

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 34  RQVPNDSDRKYLKDWARE--EFRRNKSATEEDTIRMMITQGNMQLKELEKT 82
           +++P     KY++D+ RE  EF RN +   ED   ++       + E  KT
Sbjct: 151 KELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKT 201


>gi|34304360 nephrocystin 3 [Homo sapiens]
          Length = 1330

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 13  LKQFVRRQQVLLLYRRILQTIRQ-VPNDSDRKYLK 46
           L Q  + Q  L LYR +L +IR+ + ND D++ +K
Sbjct: 735 LHQCFQCQDTLSLYRLVLHSIRESMANDVDKELMK 769


>gi|212549536 regulator of G-protein signaling like 1 [Homo sapiens]
          Length = 1076

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 14  KQFVRRQQVLLLYRRILQTIRQVPNDSDRKYL--KDW---AREEFRRNKSATEEDTIRMM 68
           ++F+ +++ +LLY+RI Q++      +D K +  + W   A E+ ++  S   E T  + 
Sbjct: 511 REFIGKEENILLYKRIQQSLELSQALADMKEMDYRQWRKIATEDLKQGGSLQVELTSPVF 570

Query: 69  ITQ-GNMQLKEL 79
           +T    M  +EL
Sbjct: 571 LTDITKMSFEEL 582


>gi|197276647 leucine rich repeat (in FLII) interacting protein 2
          isoform 3 [Homo sapiens]
          Length = 424

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 4  SRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSAT 60
          +R   A L  K+  R +   +  R + +  +++   SD++Y +++ R   R + SAT
Sbjct: 28 AREAEARLAAKRAARAEARDIRMRELERQQKELDEKSDKQYAENYTRPSSRNSASAT 84


>gi|8923224 leucine rich repeat (in FLII) interacting protein 2
          isoform 2 [Homo sapiens]
          Length = 400

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 4  SRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSAT 60
          +R   A L  K+  R +   +  R + +  +++   SD++Y +++ R   R + SAT
Sbjct: 28 AREAEARLAAKRAARAEARDIRMRELERQQKELDEKSDKQYAENYTRPSSRNSASAT 84


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,656,829
Number of Sequences: 37866
Number of extensions: 84420
Number of successful extensions: 348
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 17
length of query: 88
length of database: 18,247,518
effective HSP length: 60
effective length of query: 28
effective length of database: 15,975,558
effective search space: 447315624
effective search space used: 447315624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.