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Search of human proteins with 17402929
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17402929 sperm associated antigen 11B isoform H
preproprotein [Homo sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17402929 sperm associated antigen 11B isoform H preproprotein... 169 6e-43
gi|126032340 sperm associated antigen 11A [Homo sapiens] 154 1e-38
gi|126091042 sperm associated antigen 11B isoform G preproprotei... 154 1e-38
gi|126131097 sperm associated antigen 11B isoform D preproprotei... 146 4e-36
gi|7706551 sperm associated antigen 11B isoform A preproprotein ... 144 2e-35
gi|17402931 sperm associated antigen 11B isoform C preproprotein... 144 2e-35
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 28 1.2
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 27 3.5
gi|50845384 ADAM metallopeptidase with thrombospondin type 1 mot... 26 6.0
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 26 7.8
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 26 7.8
>gi|17402929 sperm associated antigen 11B isoform H preproprotein
[Homo sapiens]
Length = 82
Score = 169 bits (427), Expect = 6e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
Query: 61 DLLPPRTPPYQGTGQQHRQRCG 82
DLLPPRTPPYQGTGQQHRQRCG
Sbjct: 61 DLLPPRTPPYQGTGQQHRQRCG 82
>gi|126032340 sperm associated antigen 11A [Homo sapiens]
Length = 108
Score = 154 bits (390), Expect = 1e-38
Identities = 82/108 (75%), Positives = 82/108 (75%), Gaps = 26/108 (24%)
Query: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
Query: 61 DLLPPRTPPYQ--------------------------GTGQQHRQRCG 82
DLLPPRTPPYQ GTGQQHRQRCG
Sbjct: 61 DLLPPRTPPYQGDVPLGIRNTICRMQQGICRLFFCHSGTGQQHRQRCG 108
>gi|126091042 sperm associated antigen 11B isoform G preproprotein
[Homo sapiens]
Length = 108
Score = 154 bits (390), Expect = 1e-38
Identities = 82/108 (75%), Positives = 82/108 (75%), Gaps = 26/108 (24%)
Query: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
Query: 61 DLLPPRTPPYQ--------------------------GTGQQHRQRCG 82
DLLPPRTPPYQ GTGQQHRQRCG
Sbjct: 61 DLLPPRTPPYQGDVPPGIRNTICHMQQGICRLFFCHSGTGQQHRQRCG 108
>gi|126131097 sperm associated antigen 11B isoform D preproprotein
[Homo sapiens]
Length = 133
Score = 146 bits (368), Expect = 4e-36
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
Query: 61 DLLPPRTPPYQG 72
DLLPPRTPPYQG
Sbjct: 61 DLLPPRTPPYQG 72
>gi|7706551 sperm associated antigen 11B isoform A preproprotein
[Homo sapiens]
Length = 103
Score = 144 bits (362), Expect = 2e-35
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
Query: 61 DLLPPRTPPYQ 71
DLLPPRTPPYQ
Sbjct: 61 DLLPPRTPPYQ 71
>gi|17402931 sperm associated antigen 11B isoform C preproprotein
[Homo sapiens]
Length = 113
Score = 144 bits (362), Expect = 2e-35
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1 MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
Query: 61 DLLPPRTPPYQ 71
DLLPPRTPPYQ
Sbjct: 61 DLLPPRTPPYQ 71
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 20 PGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPYQ 71
P +S+A+ + E L L E+ PG GT+ V LP TPP Q
Sbjct: 961 PENSEAQEPENDQAEPLPGLEEKPPGVGTS------EGVYLTQLPHPTPPLQ 1006
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 17 LLFPGSSQARHVNHSATEAL-GELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPYQGTGQ 75
LLFPG + +H H + L G++R PG+ R R + PRT PY Q
Sbjct: 157 LLFPGLPE-QHGPHGSQNVLNGQMRLGLPGEVFG-----RSEQYRQVASPRTDPY-SAAQ 209
Query: 76 QHRQ 79
H Q
Sbjct: 210 LHNQ 213
>gi|50845384 ADAM metallopeptidase with thrombospondin type 1
motif, 1 preproprotein [Homo sapiens]
Length = 967
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 7 PSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKRDL 62
P T LLL A L S + E + ERAPG GT +L HA + L
Sbjct: 32 PVPTLLLLAAALLAVSDALGRPSEEDEELVVPELERAPGHGTTRLRL--HAFDQQL 85
>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 31 SATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPYQGTGQQHRQRCG 82
S E+ G R R PG + R A++ PPR P GT R G
Sbjct: 115 SPMESEGPHRRRKPGAESP-----RRAIEAGARPPRQRPGAGTAAARASRAG 161
>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
sapiens]
Length = 219
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 31 SATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPYQGTGQQHRQRCG 82
S E+ G R R PG + R A++ PPR P GT R G
Sbjct: 115 SPMESEGPHRRRKPGAESP-----RRAIEAGARPPRQRPGAGTAAARASRAG 161
>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
sapiens]
Length = 219
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 31 SATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPYQGTGQQHRQRCG 82
S E+ G R R PG + R A++ PPR P GT R G
Sbjct: 115 SPMESEGPHRRRKPGAESP-----RRAIEAGARPPRQRPGAGTAAARASRAG 161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,897,632
Number of Sequences: 37866
Number of extensions: 164582
Number of successful extensions: 392
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 12
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.