Search of human proteins with 17402893

Search of human proteins with 17402893

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|17402893 phosphoserine aminotransferase 1 isoform 1 [Homo
sapiens]
         (370 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17402893 phosphoserine aminotransferase 1 isoform 1 [Homo sap...   741   0.0  
gi|10863955 phosphoserine aminotransferase 1 isoform 2 [Homo sap...   627   e-180
gi|169164029 PREDICTED: similar to hCG1644578 [Homo sapiens]          124   2e-28
gi|169163248 PREDICTED: similar to hCG1644578 [Homo sapiens]          122   7e-28
gi|54860079 nadrin isoform 1 [Homo sapiens]                            29   7.7  
gi|54860105 nadrin isoform 2 [Homo sapiens]                            29   7.7  
gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domai...    29   7.7  
gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain...    29   7.7  

>gi|17402893 phosphoserine aminotransferase 1 isoform 1 [Homo
           sapiens]
          Length = 370

 Score =  741 bits (1914), Expect = 0.0
 Identities = 370/370 (100%), Positives = 370/370 (100%)

Query: 1   MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60
           MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
Sbjct: 1   MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60

Query: 61  RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120
           RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
Sbjct: 61  RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120

Query: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180
           INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
Sbjct: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180

Query: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240
           FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
Sbjct: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240

Query: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK 300
           NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK
Sbjct: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK 300

Query: 301 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF 360
           MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF
Sbjct: 301 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF 360

Query: 361 MKKFLEMHQL 370
           MKKFLEMHQL
Sbjct: 361 MKKFLEMHQL 370


>gi|10863955 phosphoserine aminotransferase 1 isoform 2 [Homo
           sapiens]
          Length = 324

 Score =  627 bits (1616), Expect = e-180
 Identities = 324/370 (87%), Positives = 324/370 (87%), Gaps = 46/370 (12%)

Query: 1   MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60
           MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
Sbjct: 1   MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60

Query: 61  RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120
           RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
Sbjct: 61  RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120

Query: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180
           INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
Sbjct: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180

Query: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240
           FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
Sbjct: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240

Query: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK 300
           NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV          
Sbjct: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV---------- 290

Query: 301 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF 360
                                               SVGGIRASLYNAVTIEDVQKLAAF
Sbjct: 291 ------------------------------------SVGGIRASLYNAVTIEDVQKLAAF 314

Query: 361 MKKFLEMHQL 370
           MKKFLEMHQL
Sbjct: 315 MKKFLEMHQL 324


>gi|169164029 PREDICTED: similar to hCG1644578 [Homo sapiens]
          Length = 184

 Score =  124 bits (310), Expect = 2e-28
 Identities = 66/105 (62%), Positives = 76/105 (72%), Gaps = 12/105 (11%)

Query: 32  YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI 91
           +KG+GISVLEM++RSSDF KIIN TENLV ELLA+P+NY         C           
Sbjct: 75  HKGIGISVLEMNNRSSDFTKIINTTENLVWELLAIPNNYCTRSFLCKKC----------- 123

Query: 92  GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPD 136
            LKAGRCA+YVVTGAWSAKAAE +KKF  +NI +PKLGSY KIPD
Sbjct: 124 -LKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPD 167


>gi|169163248 PREDICTED: similar to hCG1644578 [Homo sapiens]
          Length = 184

 Score =  122 bits (305), Expect = 7e-28
 Identities = 65/105 (61%), Positives = 76/105 (72%), Gaps = 12/105 (11%)

Query: 32  YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI 91
           +KG+GISVLEM++RSS+F KIIN TENLV ELLA+P+NY         C           
Sbjct: 75  HKGIGISVLEMNNRSSNFTKIINTTENLVWELLAIPNNYCTRSFLCKKC----------- 123

Query: 92  GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPD 136
            LKAGRCA+YVVTGAWSAKAAE +KKF  +NI +PKLGSY KIPD
Sbjct: 124 -LKAGRCANYVVTGAWSAKAAEASKKFEIVNISYPKLGSYMKIPD 167


>gi|54860079 nadrin isoform 1 [Homo sapiens]
          Length = 881

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 234 AGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYE-IIDNSQGFYVCP 292
           A  S +    P     V+G  L W +N G  A M   +S+    + E II ++  F+   
Sbjct: 386 AQTSDVNKMTPSNIAIVLGPNLLWARNEGTLAEMAAATSVHVVAVIEPIIQHADWFFPEE 445

Query: 293 VE--------PQNRSKMNIPFRIGNAKGDDALEKR 319
           VE        P      N  F  GN      LE++
Sbjct: 446 VEFNVSEAFVPLTTPSSNHSFHTGNDSDSGTLERK 480


>gi|54860105 nadrin isoform 2 [Homo sapiens]
          Length = 803

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 234 AGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYE-IIDNSQGFYVCP 292
           A  S +    P     V+G  L W +N G  A M   +S+    + E II ++  F+   
Sbjct: 386 AQTSDVNKMTPSNIAIVLGPNLLWARNEGTLAEMAAATSVHVVAVIEPIIQHADWFFPEE 445

Query: 293 VE--------PQNRSKMNIPFRIGNAKGDDALEKR 319
           VE        P      N  F  GN      LE++
Sbjct: 446 VEFNVSEAFVPLTTPSSNHSFHTGNDSDSGTLERK 480


>gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
           isoform b [Homo sapiens]
          Length = 894

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 228 LEYKVQAGNSSL-----YNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEII 282
           L+ K   GN++L     YN P C  + + G  L    N  G  A++       +   E++
Sbjct: 606 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 665

Query: 283 DNSQ-GFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDK 323
           + +Q G +  P+         I    G+   +D  EKR L K
Sbjct: 666 EQAQAGTFAFPLHVD--YSWVISTEPGSDSEEDEEEKRCLLK 705


>gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
           isoform a [Homo sapiens]
          Length = 903

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 228 LEYKVQAGNSSL-----YNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEII 282
           L+ K   GN++L     YN P C  + + G  L    N  G  A++       +   E++
Sbjct: 615 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 674

Query: 283 DNSQ-GFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDK 323
           + +Q G +  P+         I    G+   +D  EKR L K
Sbjct: 675 EQAQAGTFAFPLHVD--YSWVISTEPGSDSEEDEEEKRCLLK 714


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,570,590
Number of Sequences: 37866
Number of extensions: 552370
Number of successful extensions: 981
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 9
length of query: 370
length of database: 18,247,518
effective HSP length: 104
effective length of query: 266
effective length of database: 14,309,454
effective search space: 3806314764
effective search space used: 3806314764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.