Search of human proteins with 112420960

Search of human proteins with 112420960

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|112420960 hypothetical protein LOC374467 [Homo sapiens]
         (1197 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|112420960 hypothetical protein LOC374467 [Homo sapiens]           2360   0.0  
gi|62953116 BTB (POZ) domain containing 11 isoform b [Homo sapiens]    35   0.43 
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]    35   0.43 
gi|30581164 neuropeptides B/W receptor 2 [Homo sapiens]                35   0.56 
gi|42716275 CCR4-NOT transcription complex, subunit 1 isoform a ...    34   0.73 
gi|42476022 tetratricopeptide repeat domain 27 [Homo sapiens]          32   3.6  
gi|4826870 nucleobindin 2 [Homo sapiens]                               32   4.7  
gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide i...    31   6.2  
gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide is...    31   6.2  
gi|55741653 hypothetical protein LOC57691 [Homo sapiens]               31   6.2  

>gi|112420960 hypothetical protein LOC374467 [Homo sapiens]
          Length = 1197

 Score = 2360 bits (6115), Expect = 0.0
 Identities = 1197/1197 (100%), Positives = 1197/1197 (100%)

Query: 1    MSDENMSKTQTVYDSDSQSGSSAKEKDRGANLCVMDHFMKIFLYCRRAMVLAHRGGYWTL 60
            MSDENMSKTQTVYDSDSQSGSSAKEKDRGANLCVMDHFMKIFLYCRRAMVLAHRGGYWTL
Sbjct: 1    MSDENMSKTQTVYDSDSQSGSSAKEKDRGANLCVMDHFMKIFLYCRRAMVLAHRGGYWTL 60

Query: 61   LQNCCRALWNFTQELQILLKQAVDLDKTFPISQDGFLCTSVLPFYLGAELLIDMLIQLQN 120
            LQNCCRALWNFTQELQILLKQAVDLDKTFPISQDGFLCTSVLPFYLGAELLIDMLIQLQN
Sbjct: 61   LQNCCRALWNFTQELQILLKQAVDLDKTFPISQDGFLCTSVLPFYLGAELLIDMLIQLQN 120

Query: 121  TSSIKPIEDKGEFSVPSCYGNIKNDNGGSSLTFEHPLDDVNVVDLKWIHDFVLKSLEVLY 180
            TSSIKPIEDKGEFSVPSCYGNIKNDNGGSSLTFEHPLDDVNVVDLKWIHDFVLKSLEVLY
Sbjct: 121  TSSIKPIEDKGEFSVPSCYGNIKNDNGGSSLTFEHPLDDVNVVDLKWIHDFVLKSLEVLY 180

Query: 181  QVEKWETLVSLAIQFNTVSHERYTEQVTPLLVYAQRQLLLRIQKFKGPDITQQPCARYEA 240
            QVEKWETLVSLAIQFNTVSHERYTEQVTPLLVYAQRQLLLRIQKFKGPDITQQPCARYEA
Sbjct: 181  QVEKWETLVSLAIQFNTVSHERYTEQVTPLLVYAQRQLLLRIQKFKGPDITQQPCARYEA 240

Query: 241  EYGEKITCRNFIGKQLKINSSTIEATSNCTDLLKMLISSEYSRAKALVCVPVDVTDTLRC 300
            EYGEKITCRNFIGKQLKINSSTIEATSNCTDLLKMLISSEYSRAKALVCVPVDVTDTLRC
Sbjct: 241  EYGEKITCRNFIGKQLKINSSTIEATSNCTDLLKMLISSEYSRAKALVCVPVDVTDTLRC 300

Query: 301  FRETLEKSKYHNRSIRHSRKLLSLFLAQTQDVLQASNQRSLKVQALHSLGSLLIFAEKKR 360
            FRETLEKSKYHNRSIRHSRKLLSLFLAQTQDVLQASNQRSLKVQALHSLGSLLIFAEKKR
Sbjct: 301  FRETLEKSKYHNRSIRHSRKLLSLFLAQTQDVLQASNQRSLKVQALHSLGSLLIFAEKKR 360

Query: 361  AAFKCWCQALDDIFRKPDVLHTWKEFGPSLTNVTNSHSPPGFKDYSEEFLSRVGIWGCLQ 420
            AAFKCWCQALDDIFRKPDVLHTWKEFGPSLTNVTNSHSPPGFKDYSEEFLSRVGIWGCLQ
Sbjct: 361  AAFKCWCQALDDIFRKPDVLHTWKEFGPSLTNVTNSHSPPGFKDYSEEFLSRVGIWGCLQ 420

Query: 421  GAVISAKIAQFIKSLNVEKKTDCCILSALLFQGLLRTTLPHPKAERCYAQYEITQLLPGI 480
            GAVISAKIAQFIKSLNVEKKTDCCILSALLFQGLLRTTLPHPKAERCYAQYEITQLLPGI
Sbjct: 421  GAVISAKIAQFIKSLNVEKKTDCCILSALLFQGLLRTTLPHPKAERCYAQYEITQLLPGI 480

Query: 481  ELFSDRYRADICSVIASLYYIIRELHFVRQNLIVLPLLALYQYFVSGICQDITRNLEARI 540
            ELFSDRYRADICSVIASLYYIIRELHFVRQNLIVLPLLALYQYFVSGICQDITRNLEARI
Sbjct: 481  ELFSDRYRADICSVIASLYYIIRELHFVRQNLIVLPLLALYQYFVSGICQDITRNLEARI 540

Query: 541  LKIEVLIDLRFFSEAFYEISQIFYGKNMPCPIPAGYKATGKMKIFQSFDSGKLLTSKENI 600
            LKIEVLIDLRFFSEAFYEISQIFYGKNMPCPIPAGYKATGKMKIFQSFDSGKLLTSKENI
Sbjct: 541  LKIEVLIDLRFFSEAFYEISQIFYGKNMPCPIPAGYKATGKMKIFQSFDSGKLLTSKENI 600

Query: 601  QAIDELRNKGLPAVLVTIGQPHLLNKFNFVKAYFFLSVAATINCVPENKFKTVITNKSKP 660
            QAIDELRNKGLPAVLVTIGQPHLLNKFNFVKAYFFLSVAATINCVPENKFKTVITNKSKP
Sbjct: 601  QAIDELRNKGLPAVLVTIGQPHLLNKFNFVKAYFFLSVAATINCVPENKFKTVITNKSKP 660

Query: 661  NLPNLEEIYSKDDGSSFYNLTKLKDEITLSMLKSMLLMEAEDRLNFLLSEVEQKTLSQCS 720
            NLPNLEEIYSKDDGSSFYNLTKLKDEITLSMLKSMLLMEAEDRLNFLLSEVEQKTLSQCS
Sbjct: 661  NLPNLEEIYSKDDGSSFYNLTKLKDEITLSMLKSMLLMEAEDRLNFLLSEVEQKTLSQCS 720

Query: 721  AGELEIVVEARLQLAAVALQRHRAAYSAAIVFSTLTLLQDSKLFEKKVVQDDTENPVSPG 780
            AGELEIVVEARLQLAAVALQRHRAAYSAAIVFSTLTLLQDSKLFEKKVVQDDTENPVSPG
Sbjct: 721  AGELEIVVEARLQLAAVALQRHRAAYSAAIVFSTLTLLQDSKLFEKKVVQDDTENPVSPG 780

Query: 781  TSVTENKDDSEFLDPISLNAREYFNIHLWLRCRLALVTAFVAQIHGIGIVKEDDMTDCLS 840
            TSVTENKDDSEFLDPISLNAREYFNIHLWLRCRLALVTAFVAQIHGIGIVKEDDMTDCLS
Sbjct: 781  TSVTENKDDSEFLDPISLNAREYFNIHLWLRCRLALVTAFVAQIHGIGIVKEDDMTDCLS 840

Query: 841  LINEVCMEAKSAGDTELQAEFLTQAVILGLQEKHLKADIMTNLQDIIHLLEGNEFISPQS 900
            LINEVCMEAKSAGDTELQAEFLTQAVILGLQEKHLKADIMTNLQDIIHLLEGNEFISPQS
Sbjct: 841  LINEVCMEAKSAGDTELQAEFLTQAVILGLQEKHLKADIMTNLQDIIHLLEGNEFISPQS 900

Query: 901  RLTLARSLVLLDDLTKAEKFKESPSSKTGKLNLLTRAHSILTEQMLAFGETIEFRSSNTK 960
            RLTLARSLVLLDDLTKAEKFKESPSSKTGKLNLLTRAHSILTEQMLAFGETIEFRSSNTK
Sbjct: 901  RLTLARSLVLLDDLTKAEKFKESPSSKTGKLNLLTRAHSILTEQMLAFGETIEFRSSNTK 960

Query: 961  YANPLQPLKNIYLPHVMLLAKIKMRIGHTVAKQVYYKNKRKDPSKWLPALHLFDVALKLC 1020
            YANPLQPLKNIYLPHVMLLAKIKMRIGHTVAKQVYYKNKRKDPSKWLPALHLFDVALKLC
Sbjct: 961  YANPLQPLKNIYLPHVMLLAKIKMRIGHTVAKQVYYKNKRKDPSKWLPALHLFDVALKLC 1020

Query: 1021 RTTAVEEHEVEAEILFQKGKIERQILMEEKSPSFQLESLYEAIQLSLKNDQNSGLIRDSY 1080
            RTTAVEEHEVEAEILFQKGKIERQILMEEKSPSFQLESLYEAIQLSLKNDQNSGLIRDSY
Sbjct: 1021 RTTAVEEHEVEAEILFQKGKIERQILMEEKSPSFQLESLYEAIQLSLKNDQNSGLIRDSY 1080

Query: 1081 LEMALLYFHLKKPKIKISGSPLTLKPPLRRSSSVKETSANKFEMYSSLAWIAIRAAAQVS 1140
            LEMALLYFHLKKPKIKISGSPLTLKPPLRRSSSVKETSANKFEMYSSLAWIAIRAAAQVS
Sbjct: 1081 LEMALLYFHLKKPKIKISGSPLTLKPPLRRSSSVKETSANKFEMYSSLAWIAIRAAAQVS 1140

Query: 1141 EAVLAINLLIGKKNTRMHKVNQVALPNIPEFAALDLLSSYTDYLLGMFGCLHIMQKN 1197
            EAVLAINLLIGKKNTRMHKVNQVALPNIPEFAALDLLSSYTDYLLGMFGCLHIMQKN
Sbjct: 1141 EAVLAINLLIGKKNTRMHKVNQVALPNIPEFAALDLLSSYTDYLLGMFGCLHIMQKN 1197


>gi|62953116 BTB (POZ) domain containing 11 isoform b [Homo sapiens]
          Length = 641

 Score = 35.0 bits (79), Expect = 0.43
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 159 DVNVVDLKWIHDFVLKSLEVLYQVEKWETLVSLAIQFNTVSHERYTEQVTPLLVYAQRQL 218
           D+  + + W     L+SL + +Q  +   +  L  +F T+  E YTE+    LV     L
Sbjct: 350 DIRSIGVPWTLHTWLESLRIAFQQHRRPLIQCLLKEFKTIQEEEYTEE----LVTQGLPL 405

Query: 219 LLRIQK-FKGPDITQQPCARYEAEYG 243
           +  I K  K   I+QQ C  +   YG
Sbjct: 406 MFEILKASKNEVISQQLCVIFTHCYG 431


>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
          Length = 1104

 Score = 35.0 bits (79), Expect = 0.43
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 159 DVNVVDLKWIHDFVLKSLEVLYQVEKWETLVSLAIQFNTVSHERYTEQVTPLLVYAQRQL 218
           D+  + + W     L+SL + +Q  +   +  L  +F T+  E YTE+    LV     L
Sbjct: 813 DIRSIGVPWTLHTWLESLRIAFQQHRRPLIQCLLKEFKTIQEEEYTEE----LVTQGLPL 868

Query: 219 LLRIQK-FKGPDITQQPCARYEAEYG 243
           +  I K  K   I+QQ C  +   YG
Sbjct: 869 MFEILKASKNEVISQQLCVIFTHCYG 894


>gi|30581164 neuropeptides B/W receptor 2 [Homo sapiens]
          Length = 333

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 118 LQNTSSIKPIEDKGEFSVPSCYGNIKNDNG-GSSLTFEHPL 157
           +Q     +P++ +G FS+P+   N+  DNG G + TF  PL
Sbjct: 1   MQAAGHPEPLDSRGSFSLPTMGANVSQDNGTGHNATFSEPL 41


>gi|42716275 CCR4-NOT transcription complex, subunit 1 isoform a [Homo
            sapiens]
          Length = 2376

 Score = 34.3 bits (77), Expect = 0.73
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 790  SEFLDPISLNAREYFNIHLWL---------RCRLALVTAFVAQIHGIGIVKEDDM-TDCL 839
            SE+ DP  L  +  + +  W+         R      +AFV Q+H  GI+K DD+ T   
Sbjct: 1840 SEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1899

Query: 840  SLINEVCMEAKSAGDTELQ 858
             L  E+C+E       E Q
Sbjct: 1900 RLCTEMCVEISYRAQAEQQ 1918


>gi|42476022 tetratricopeptide repeat domain 27 [Homo sapiens]
          Length = 843

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 280 EYSRAKALVCVPVDVTDTLRCFRETLEKSKYHNRSIRHSRKLLSLFLAQTQDVLQASNQR 339
           E     +L C+  DV     C+ +  E S+Y +   + S+ LL L   + Q+ ++   +R
Sbjct: 494 EKKETPSLYCLLGDVLGDHSCYDKAWELSRYRSARAQRSKALLHLRNKEFQECVECF-ER 552

Query: 340 SLKVQALH-----SLGSLLIFAEKKRAAFKCWCQALDDIFRKPDVLHTWKEFGPS 389
           S+K+  +      SLG   +  E  + + K + +    +  +PD    W     S
Sbjct: 553 SVKINPMQLGVWFSLGCAYLALEDYQGSAKAFQRC---VTLEPDNAEAWNNLSTS 604


>gi|4826870 nucleobindin 2 [Homo sapiens]
          Length = 420

 Score = 31.6 bits (70), Expect = 4.7
 Identities = 39/208 (18%), Positives = 79/208 (37%), Gaps = 29/208 (13%)

Query: 759 QDSKLFEKKVVQDDTENPVSPGTS--VTENKDDSEFLDPISLNAREYFNIHLWLRCRLAL 816
           ++SK  E K   ++      PG+   + E  ++++ LDP   + + +F +H         
Sbjct: 203 EESKFEEMKKKHENHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLH--------- 253

Query: 817 VTAFVAQIHGIGIVKEDDMTDCLSLINEVCMEAKSAGD--TELQAEFLTQAVILGLQEKH 874
                  ++  G + E ++    +   E   + K+  D   E++ E L     + + E  
Sbjct: 254 ------DVNSDGFLDEQELEALFTKELEKVYDPKNEEDDMVEMEEERLRMREHV-MNEVD 306

Query: 875 LKADIMTNLQDIIHLLEGNEFISPQSRLTLARSLVLLDDLTK---------AEKFKESPS 925
              D +  L++ +   E  EF+ P S  TL +     ++  K           + K+   
Sbjct: 307 TNKDRLVTLEEFLKATEKKEFLEPDSWETLDQQQFFTEEELKEYENIIALQENELKKKAD 366

Query: 926 SKTGKLNLLTRAHSILTEQMLAFGETIE 953
               +   L R H  L  Q L + + I+
Sbjct: 367 ELQKQKEELQRQHDQLEAQKLEYHQVIQ 394


>gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide
           isoform 2 [Homo sapiens]
          Length = 268

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 23/142 (16%)

Query: 230 ITQQPCARYEAEYGEKITCRNFIGKQLKINSSTIEATSNCTDLLKMLISSEYSRAKALVC 289
           I+Q+     E + G  +  +N + +QLK + S+I   S   + L+ML+ +  S       
Sbjct: 106 ISQESFDVDETDSGAGLKWKN-VARQLKEDLSSIILLSE--EDLQMLVDAPCS------- 155

Query: 290 VPVDVTDTLRCFRETLEKSKYHNRSIRHSRKLLSLFLAQTQDVLQASNQRSLKVQALHSL 349
              D+   LR    T+++       ++H+   L   L Q ++V Q+     L +QAL   
Sbjct: 156 ---DLAQELRQSCATVQR-------LQHT---LQQVLDQREEVRQSKQLLQLYLQALEKE 202

Query: 350 GSLLIFAEKKRAAFKCWCQALD 371
           GSLL   E+ +AAF     A+D
Sbjct: 203 GSLLSKQEESKAAFGEEVDAVD 224


>gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide
           isoform 1 [Homo sapiens]
          Length = 331

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 23/142 (16%)

Query: 230 ITQQPCARYEAEYGEKITCRNFIGKQLKINSSTIEATSNCTDLLKMLISSEYSRAKALVC 289
           I+Q+     E + G  +  +N + +QLK + S+I   S   + L+ML+ +  S       
Sbjct: 106 ISQESFDVDETDSGAGLKWKN-VARQLKEDLSSIILLSE--EDLQMLVDAPCS------- 155

Query: 290 VPVDVTDTLRCFRETLEKSKYHNRSIRHSRKLLSLFLAQTQDVLQASNQRSLKVQALHSL 349
              D+   LR    T+++       ++H+   L   L Q ++V Q+     L +QAL   
Sbjct: 156 ---DLAQELRQSCATVQR-------LQHT---LQQVLDQREEVRQSKQLLQLYLQALEKE 202

Query: 350 GSLLIFAEKKRAAFKCWCQALD 371
           GSLL   E+ +AAF     A+D
Sbjct: 203 GSLLSKQEESKAAFGEEVDAVD 224


>gi|55741653 hypothetical protein LOC57691 [Homo sapiens]
          Length = 787

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 911 LDDLTKAEKFKESPSSKTGKLNLLTRAHSILTEQML 946
           ++DL K++KFK+ P +K  K N L R  SIL + ++
Sbjct: 578 IEDLIKSDKFKDIPFNKNNKFNALPR--SILLDNII 611


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,657,449
Number of Sequences: 37866
Number of extensions: 1676375
Number of successful extensions: 4114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4106
Number of HSP's gapped (non-prelim): 13
length of query: 1197
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1083
effective length of database: 13,930,794
effective search space: 15087049902
effective search space used: 15087049902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.