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Search of human proteins with 112293285
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|112293285 spindlin [Homo sapiens]
(262 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|112293285 spindlin [Homo sapiens] 542 e-154
gi|115527078 spindlin family, member 3 [Homo sapiens] 454 e-128
gi|56682949 spindlin-like protein 2 [Homo sapiens] 416 e-116
gi|56682947 spindlin-like protein 2 [Homo sapiens] 416 e-116
gi|56682945 spindlin-like protein 2 [Homo sapiens] 416 e-116
gi|117606320 spindlin family, member 2 [Homo sapiens] 414 e-116
gi|108796661 spindlin family, member 4 [Homo sapiens] 367 e-102
gi|161019170 mucin 5AC [Homo sapiens] 30 1.6
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 30 1.6
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 28 6.2
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 28 6.2
gi|111955326 MLX interacting protein [Homo sapiens] 28 6.2
gi|45387955 hypothetical protein LOC125988 [Homo sapiens] 28 6.2
>gi|112293285 spindlin [Homo sapiens]
Length = 262
Score = 542 bits (1396), Expect = e-154
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQH 60
MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQH
Sbjct: 1 MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQH 60
Query: 61 GWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVAT 120
GWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVAT
Sbjct: 61 GWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVAT 120
Query: 121 SRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQ 180
SRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQ
Sbjct: 121 SRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQ 180
Query: 181 LLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKP 240
LLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKP
Sbjct: 181 LLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKP 240
Query: 241 SVYFIKFDDDFHIYVYDLVKTS 262
SVYFIKFDDDFHIYVYDLVKTS
Sbjct: 241 SVYFIKFDDDFHIYVYDLVKTS 262
>gi|115527078 spindlin family, member 3 [Homo sapiens]
Length = 258
Score = 454 bits (1168), Expect = e-128
Identities = 218/263 (82%), Positives = 241/263 (91%), Gaps = 6/263 (2%)
Query: 1 MKTPFGKTP-GQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ 59
MKTPFGK GQRSR AGH VS M+K++ +HKKHRS +P SQPR NIVGCRIQ
Sbjct: 1 MKTPFGKAAAGQRSRTGAGHGSVSVTMIKRKAAHKKHRS-----RPTSQPRGNIVGCRIQ 55
Query: 60 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA 119
HGWK+G+ P+TQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLEL++DERVS+LEVLP+RVA
Sbjct: 56 HGWKDGDEPLTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELHRDERVSSLEVLPNRVA 115
Query: 120 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY 179
+SRISD HLA+ M+GKAVEH+FETE+GSK+EWRGMVLA+APVMNTWFYITYEKDPVLYMY
Sbjct: 116 SSRISDTHLAEIMVGKAVEHIFETEEGSKNEWRGMVLAQAPVMNTWFYITYEKDPVLYMY 175
Query: 180 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK 239
QLLDDYK+GDLRI+ DSNDSP AEREPGEV+DSLVGKQVEYAK+DGSKRTGMVIHQVEAK
Sbjct: 176 QLLDDYKDGDLRILQDSNDSPLAEREPGEVIDSLVGKQVEYAKDDGSKRTGMVIHQVEAK 235
Query: 240 PSVYFIKFDDDFHIYVYDLVKTS 262
PSVYFIKFDDDFHIYVYDLVKTS
Sbjct: 236 PSVYFIKFDDDFHIYVYDLVKTS 258
>gi|56682949 spindlin-like protein 2 [Homo sapiens]
Length = 258
Score = 416 bits (1068), Expect = e-116
Identities = 202/263 (76%), Positives = 226/263 (85%), Gaps = 6/263 (2%)
Query: 1 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ 59
MKTP + GQ++RA AG A SANM KK+ S KK R +P SQPRRNIVGCRI
Sbjct: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS 55
Query: 60 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA 119
HGWKEG+ P+TQWKGTVLDQVP+NPSLYL+KYDG DCVYGLEL++DERV +L++L DRVA
Sbjct: 56 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA 115
Query: 120 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY 179
+S ISDA+LA+T+IGKAVEHMFE E GSKDEWRGMVLA+AP+M WFYITYEKDPVLYMY
Sbjct: 116 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY 175
Query: 180 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK 239
QLLDDYKEGDLRIMP+S++SPP EREPG VVD L+GK VEY KEDGSKR GMVIHQVEAK
Sbjct: 176 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK 235
Query: 240 PSVYFIKFDDDFHIYVYDLVKTS 262
PSVYFIKFDDDFHIYVYDLVK S
Sbjct: 236 PSVYFIKFDDDFHIYVYDLVKKS 258
>gi|56682947 spindlin-like protein 2 [Homo sapiens]
Length = 258
Score = 416 bits (1068), Expect = e-116
Identities = 202/263 (76%), Positives = 226/263 (85%), Gaps = 6/263 (2%)
Query: 1 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ 59
MKTP + GQ++RA AG A SANM KK+ S KK R +P SQPRRNIVGCRI
Sbjct: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS 55
Query: 60 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA 119
HGWKEG+ P+TQWKGTVLDQVP+NPSLYL+KYDG DCVYGLEL++DERV +L++L DRVA
Sbjct: 56 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA 115
Query: 120 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY 179
+S ISDA+LA+T+IGKAVEHMFE E GSKDEWRGMVLA+AP+M WFYITYEKDPVLYMY
Sbjct: 116 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY 175
Query: 180 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK 239
QLLDDYKEGDLRIMP+S++SPP EREPG VVD L+GK VEY KEDGSKR GMVIHQVEAK
Sbjct: 176 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK 235
Query: 240 PSVYFIKFDDDFHIYVYDLVKTS 262
PSVYFIKFDDDFHIYVYDLVK S
Sbjct: 236 PSVYFIKFDDDFHIYVYDLVKKS 258
>gi|56682945 spindlin-like protein 2 [Homo sapiens]
Length = 258
Score = 416 bits (1068), Expect = e-116
Identities = 202/263 (76%), Positives = 226/263 (85%), Gaps = 6/263 (2%)
Query: 1 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ 59
MKTP + GQ++RA AG A SANM KK+ S KK R +P SQPRRNIVGCRI
Sbjct: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS 55
Query: 60 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA 119
HGWKEG+ P+TQWKGTVLDQVP+NPSLYL+KYDG DCVYGLEL++DERV +L++L DRVA
Sbjct: 56 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA 115
Query: 120 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY 179
+S ISDA+LA+T+IGKAVEHMFE E GSKDEWRGMVLA+AP+M WFYITYEKDPVLYMY
Sbjct: 116 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY 175
Query: 180 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK 239
QLLDDYKEGDLRIMP+S++SPP EREPG VVD L+GK VEY KEDGSKR GMVIHQVEAK
Sbjct: 176 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVEAK 235
Query: 240 PSVYFIKFDDDFHIYVYDLVKTS 262
PSVYFIKFDDDFHIYVYDLVK S
Sbjct: 236 PSVYFIKFDDDFHIYVYDLVKKS 258
>gi|117606320 spindlin family, member 2 [Homo sapiens]
Length = 258
Score = 414 bits (1064), Expect = e-116
Identities = 201/263 (76%), Positives = 225/263 (85%), Gaps = 6/263 (2%)
Query: 1 MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQ 59
MKTP + GQ++RA AG A SANM KK+ S KK R +P SQPRRNIVGCRI
Sbjct: 1 MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRG-----RPSSQPRRNIVGCRIS 55
Query: 60 HGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVA 119
HGWKEG+ P+TQWKGTVLDQVP+NPSLYL+KYDG DCVYGLEL++DERV +L++L DRVA
Sbjct: 56 HGWKEGDEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVA 115
Query: 120 TSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMY 179
+S ISDA+LA+T+IGKAVEHMFE E GSKDEWRGMVLA+AP+M WFYITYEKDPVLYMY
Sbjct: 116 SSHISDANLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMY 175
Query: 180 QLLDDYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAK 239
QLLDDYKEGDLRIMP+S++SPP EREPG VVD L+GK VEY KEDGSKR GMVIHQVE K
Sbjct: 176 QLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLIGKHVEYTKEDGSKRIGMVIHQVETK 235
Query: 240 PSVYFIKFDDDFHIYVYDLVKTS 262
PSVYFIKFDDDFHIYVYDLVK S
Sbjct: 236 PSVYFIKFDDDFHIYVYDLVKKS 258
>gi|108796661 spindlin family, member 4 [Homo sapiens]
Length = 249
Score = 367 bits (941), Expect = e-102
Identities = 184/245 (75%), Positives = 208/245 (84%), Gaps = 7/245 (2%)
Query: 18 GHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVTQWKGTVL 77
G GVSA +MKKR +H+K R KP RRNIVGCRIQHGWKEGN PV QWKGTVL
Sbjct: 10 GVDGVSAYLMKKRHTHRKQRR-----KPTFLTRRNIVGCRIQHGWKEGNEPVEQWKGTVL 64
Query: 78 DQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAV 137
+QV V P+LY+IKYDG D VYGLEL++D+RV ALE+LP+RV T RI D+ LAD++IGKAV
Sbjct: 65 EQVSVKPTLYIIKYDGKDSVYGLELHRDKRVLALEILPERVPTPRI-DSRLADSLIGKAV 123
Query: 138 EHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSN 197
EH+FE E G+KDEW+GMVLARAPVM+TWFYITYEKDPVLYMY LLDDYK+GDLRI+PDSN
Sbjct: 124 EHVFEGEHGTKDEWKGMVLARAPVMDTWFYITYEKDPVLYMYTLLDDYKDGDLRIIPDSN 183
Query: 198 -DSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVY 256
P AE+EPGEVVDSLVGKQVE+AK+DGSKRTG+ IHQV AKPSVYFIKFDDD HIYVY
Sbjct: 184 YYFPTAEQEPGEVVDSLVGKQVEHAKDDGSKRTGIFIHQVVAKPSVYFIKFDDDIHIYVY 243
Query: 257 DLVKT 261
LVKT
Sbjct: 244 GLVKT 248
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 30.4 bits (67), Expect = 1.6
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 KTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIV--GCRIQHGWKE 64
++P GH ++ T K S++ PS P S P +V GC Q W E
Sbjct: 2901 ESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSE 2960
Score = 30.4 bits (67), Expect = 1.6
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 KTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIV--GCRIQHGWKE 64
++P GH ++ T K S++ PS P S P +V GC Q W E
Sbjct: 3403 ESPPSPGTTTPGHTRATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSE 3462
Score = 30.4 bits (67), Expect = 1.6
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 KTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIV--GCRIQHGWKE 64
++P GH ++ T K S++ PS P S P +V GC Q W E
Sbjct: 4550 ESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSE 4609
Score = 29.3 bits (64), Expect = 3.6
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 KTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIV--GCRIQHGWKE 64
++P GH ++ T K S++ PS P S P +V GC Q W E
Sbjct: 4048 ESPPSPGTTTPGHTRGTSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSE 4107
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 30.4 bits (67), Expect = 1.6
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 KTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIV--GCRIQHGWKE 64
++P GH ++ T K S++ PS P S P +V GC Q W E
Sbjct: 2266 ESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSE 2325
Score = 30.4 bits (67), Expect = 1.6
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 KTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIV--GCRIQHGWKE 64
++P GH ++ T K S++ PS P S P +V GC Q W E
Sbjct: 2823 ESPPSPGTTTPGHTRATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSE 2882
Score = 30.4 bits (67), Expect = 1.6
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 KTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIV--GCRIQHGWKE 64
++P GH ++ T K S++ PS P S P +V GC Q W E
Sbjct: 4080 ESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSE 4139
Score = 29.3 bits (64), Expect = 3.6
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 KTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIV--GCRIQHGWKE 64
++P GH ++ T K S++ PS P S P +V GC Q W E
Sbjct: 3523 ESPPSPGTTTPGHTRGTSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSE 3582
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 28.5 bits (62), Expect = 6.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 4 PFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWK 63
P K+ RSR+ A S++ KKR+S + SS+ PV P + +G + K
Sbjct: 348 PSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSI---SPVRLPLNSSLGAELSRKKK 404
Query: 64 E 64
E
Sbjct: 405 E 405
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 28.5 bits (62), Expect = 6.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 4 PFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWK 63
P K+ RSR+ A S++ KKR+S + SS+ PV P + +G + K
Sbjct: 348 PSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSI---SPVRLPLNSSLGAELSRKKK 404
Query: 64 E 64
E
Sbjct: 405 E 405
>gi|111955326 MLX interacting protein [Homo sapiens]
Length = 919
Score = 28.5 bits (62), Expect = 6.2
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 134 GKAVEHMFETEDGSKDEWRGMVLARAPVMNTWF--YITYEKDPVLYMYQLLDDYKEGDLR 191
GK V ++ G K +WR + + W+ Y+ K+PV + LD + D
Sbjct: 139 GKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEH 198
Query: 192 IMPDS 196
P++
Sbjct: 199 RRPEA 203
>gi|45387955 hypothetical protein LOC125988 [Homo sapiens]
Length = 118
Score = 28.5 bits (62), Expect = 6.2
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 189 DLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYF 244
D ++ S+ S A ++ GEVV + + +Y ++TG+ I Q+ A P +YF
Sbjct: 27 DQELLGPSDKSQAALQKAGEVVPPAMYQFSQYV----CQQTGLQIPQLPAPPKIYF 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,725,458
Number of Sequences: 37866
Number of extensions: 477401
Number of successful extensions: 1227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 19
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.