Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 169179067

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169179067 PREDICTED: similar to hCG1647409 [Homo sapiens]
         (150 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169177621 PREDICTED: similar to hCG1647409 [Homo sapiens]          307   2e-84
gi|169179067 PREDICTED: similar to hCG1647409 [Homo sapiens]          307   2e-84
gi|169181261 PREDICTED: hypothetical protein LOC100132781 [Homo ...   307   2e-84
gi|239755288 PREDICTED: cyclin Y-like 2 [Homo sapiens]                101   3e-22
gi|239749780 PREDICTED: cyclin Y-like 2 [Homo sapiens]                101   3e-22
gi|239744040 PREDICTED: cyclin Y-like 2 [Homo sapiens]                101   3e-22
gi|214830655 cyclin Y-like 1 isoform 1 [Homo sapiens]                  81   3e-16
gi|22749085 cyclin Y-like 1 isoform 2 [Homo sapiens]                   81   3e-16
gi|32171247 cyclin Y isoform 1 [Homo sapiens]                          72   1e-13
gi|190341110 cyclin Y isoform 2 [Homo sapiens]                         72   1e-13
gi|239756576 PREDICTED: cyclin Y-like 3 [Homo sapiens]                 54   6e-08
gi|239748884 PREDICTED: cyclin Y-like 3 [Homo sapiens]                 54   6e-08
gi|239745552 PREDICTED: cyclin Y-like 3 [Homo sapiens]                 54   6e-08
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming...    28   2.9  
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming...    28   2.9  
gi|93102379 low density lipoprotein-related protein 1B precursor...    27   5.0  

>gi|169177621 PREDICTED: similar to hCG1647409 [Homo sapiens]
          Length = 150

 Score =  307 bits (787), Expect = 2e-84
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60
           MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL
Sbjct: 1   MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60

Query: 61  ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120
           ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED
Sbjct: 61  ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120

Query: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150
           KDFYGTANKRKRSLSSDDLIDLQCLKAILS
Sbjct: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150


>gi|169179067 PREDICTED: similar to hCG1647409 [Homo sapiens]
          Length = 150

 Score =  307 bits (787), Expect = 2e-84
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60
           MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL
Sbjct: 1   MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60

Query: 61  ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120
           ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED
Sbjct: 61  ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120

Query: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150
           KDFYGTANKRKRSLSSDDLIDLQCLKAILS
Sbjct: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150


>gi|169181261 PREDICTED: hypothetical protein LOC100132781 [Homo
           sapiens]
          Length = 150

 Score =  307 bits (787), Expect = 2e-84
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60
           MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL
Sbjct: 1   MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60

Query: 61  ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120
           ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED
Sbjct: 61  ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120

Query: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150
           KDFYGTANKRKRSLSSDDLIDLQCLKAILS
Sbjct: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150


>gi|239755288 PREDICTED: cyclin Y-like 2 [Homo sapiens]
          Length = 362

 Score =  101 bits (251), Expect = 3e-22
 Identities = 69/156 (44%), Positives = 85/156 (54%), Gaps = 22/156 (14%)

Query: 14  TGLYISMGTIYIERLESYADIDICPT--------------KLEEDCLVTHLSCCG----- 54
           T  +  +  IYIERL SYADIDICPT              K+  D  V +   C      
Sbjct: 208 TAEFAIVSLIYIERLVSYADIDICPTNWKRIVLGAILLASKVWSDMAVWNEDYCKLFKNI 267

Query: 55  AMTMRLELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKV 114
            +    EL  QF   IN +  +  SVY++ YFDL  LAH++ LY P  LLD ERAW+L+ 
Sbjct: 268 TVEEMNELERQFLKLINYNNSITNSVYSRFYFDLRTLAHNNGLYSPVYLLDRERAWKLEA 327

Query: 115 VSRLE-DKDFYGTANKRKRSLSSDDLIDLQCLKAIL 149
            SR+E DK FY  A  +  SLS+DDLI LQ  KAIL
Sbjct: 328 FSRMEQDKVFYSAA--KNGSLSADDLIHLQRAKAIL 361


>gi|239749780 PREDICTED: cyclin Y-like 2 [Homo sapiens]
          Length = 362

 Score =  101 bits (251), Expect = 3e-22
 Identities = 69/156 (44%), Positives = 85/156 (54%), Gaps = 22/156 (14%)

Query: 14  TGLYISMGTIYIERLESYADIDICPT--------------KLEEDCLVTHLSCCG----- 54
           T  +  +  IYIERL SYADIDICPT              K+  D  V +   C      
Sbjct: 208 TAEFAIVSLIYIERLVSYADIDICPTNWKRIVLGAILLASKVWSDMAVWNEDYCKLFKNI 267

Query: 55  AMTMRLELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKV 114
            +    EL  QF   IN +  +  SVY++ YFDL  LAH++ LY P  LLD ERAW+L+ 
Sbjct: 268 TVEEMNELERQFLKLINYNNSITNSVYSRFYFDLRTLAHNNGLYSPVYLLDRERAWKLEA 327

Query: 115 VSRLE-DKDFYGTANKRKRSLSSDDLIDLQCLKAIL 149
            SR+E DK FY  A  +  SLS+DDLI LQ  KAIL
Sbjct: 328 FSRMEQDKVFYSAA--KNGSLSADDLIHLQRAKAIL 361


>gi|239744040 PREDICTED: cyclin Y-like 2 [Homo sapiens]
          Length = 362

 Score =  101 bits (251), Expect = 3e-22
 Identities = 69/156 (44%), Positives = 85/156 (54%), Gaps = 22/156 (14%)

Query: 14  TGLYISMGTIYIERLESYADIDICPT--------------KLEEDCLVTHLSCCG----- 54
           T  +  +  IYIERL SYADIDICPT              K+  D  V +   C      
Sbjct: 208 TAEFAIVSLIYIERLVSYADIDICPTNWKRIVLGAILLASKVWSDMAVWNEDYCKLFKNI 267

Query: 55  AMTMRLELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKV 114
            +    EL  QF   IN +  +  SVY++ YFDL  LAH++ LY P  LLD ERAW+L+ 
Sbjct: 268 TVEEMNELERQFLKLINYNNSITNSVYSRFYFDLRTLAHNNGLYSPVYLLDRERAWKLEA 327

Query: 115 VSRLE-DKDFYGTANKRKRSLSSDDLIDLQCLKAIL 149
            SR+E DK FY  A  +  SLS+DDLI LQ  KAIL
Sbjct: 328 FSRMEQDKVFYSAA--KNGSLSADDLIHLQRAKAIL 361


>gi|214830655 cyclin Y-like 1 isoform 1 [Homo sapiens]
          Length = 308

 Score = 81.3 bits (199), Expect = 3e-16
 Identities = 57/148 (38%), Positives = 80/148 (54%), Gaps = 22/148 (14%)

Query: 23  IYIERLESYADIDICPT--------------KLEEDCLVTHLSCCGAMTMRL-----ELG 63
           +Y+ERL +YA+IDICPT              K+ +D  V ++  C  +         E+ 
Sbjct: 163 VYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEME 222

Query: 64  NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRL-EDKD 122
             F   +  +++VP SVY K YFDL +LA D++L   F  L  ERA  L+ +SRL EDKD
Sbjct: 223 RHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKD 282

Query: 123 FYGTANKRKRSLSSDDLIDLQCLKAILS 150
               A   +RS S+D+ I +Q  KAILS
Sbjct: 283 LCRAA--MRRSFSADNFIGIQRSKAILS 308


>gi|22749085 cyclin Y-like 1 isoform 2 [Homo sapiens]
          Length = 289

 Score = 81.3 bits (199), Expect = 3e-16
 Identities = 57/148 (38%), Positives = 80/148 (54%), Gaps = 22/148 (14%)

Query: 23  IYIERLESYADIDICPT--------------KLEEDCLVTHLSCCGAMTMRL-----ELG 63
           +Y+ERL +YA+IDICPT              K+ +D  V ++  C  +         E+ 
Sbjct: 144 VYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEME 203

Query: 64  NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRL-EDKD 122
             F   +  +++VP SVY K YFDL +LA D++L   F  L  ERA  L+ +SRL EDKD
Sbjct: 204 RHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKD 263

Query: 123 FYGTANKRKRSLSSDDLIDLQCLKAILS 150
               A   +RS S+D+ I +Q  KAILS
Sbjct: 264 LCRAA--MRRSFSADNFIGIQRSKAILS 289


>gi|32171247 cyclin Y isoform 1 [Homo sapiens]
          Length = 341

 Score = 72.4 bits (176), Expect = 1e-13
 Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 20/148 (13%)

Query: 23  IYIERLESYADIDICP--------------TKLEEDCLVTHLSCCGAMTMRL-----ELG 63
           +Y+ERL +YA+IDICP              +K+ +D  V ++  C  +         EL 
Sbjct: 194 VYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELE 253

Query: 64  NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRL-EDKD 122
            QF   +  +++VP SVY K YFDL +LA  ++L  P   L  ERA +L+ +SRL EDK 
Sbjct: 254 RQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKY 313

Query: 123 FYGTANKRKRSLSSDDLIDLQCLKAILS 150
                + RKRS S+D+L   +   AI+S
Sbjct: 314 KDLRRSARKRSASADNLTLPRWSPAIIS 341


>gi|190341110 cyclin Y isoform 2 [Homo sapiens]
          Length = 287

 Score = 72.4 bits (176), Expect = 1e-13
 Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 20/148 (13%)

Query: 23  IYIERLESYADIDICP--------------TKLEEDCLVTHLSCCGAMTMRL-----ELG 63
           +Y+ERL +YA+IDICP              +K+ +D  V ++  C  +         EL 
Sbjct: 140 VYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELE 199

Query: 64  NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRL-EDKD 122
            QF   +  +++VP SVY K YFDL +LA  ++L  P   L  ERA +L+ +SRL EDK 
Sbjct: 200 RQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKY 259

Query: 123 FYGTANKRKRSLSSDDLIDLQCLKAILS 150
                + RKRS S+D+L   +   AI+S
Sbjct: 260 KDLRRSARKRSASADNLTLPRWSPAIIS 287


>gi|239756576 PREDICTED: cyclin Y-like 3 [Homo sapiens]
          Length = 351

 Score = 53.5 bits (127), Expect = 6e-08
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 19/110 (17%)

Query: 23  IYIERLESYADIDICPTKLEEDCLVTHL-------------------SCCGAMTMRLELG 63
           +YI+RL + A+ID+CPT  ++  L T L                   S   A+    ++ 
Sbjct: 106 VYIKRLLTSANIDLCPTNWKKIVLGTMLLASKVWRNHGLWSVDDSQNSKDTAVENMSKME 165

Query: 64  NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELK 113
             F   +  ++ V  SVY K YFDLCALA+D  LY  F  L  ++A +L+
Sbjct: 166 KCFLELLEFNIHVSASVYAKYYFDLCALANDHDLYFLFSFLHKDKAQKLE 215


>gi|239748884 PREDICTED: cyclin Y-like 3 [Homo sapiens]
          Length = 351

 Score = 53.5 bits (127), Expect = 6e-08
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 19/110 (17%)

Query: 23  IYIERLESYADIDICPTKLEEDCLVTHL-------------------SCCGAMTMRLELG 63
           +YI+RL + A+ID+CPT  ++  L T L                   S   A+    ++ 
Sbjct: 106 VYIKRLLTSANIDLCPTNWKKIVLGTMLLASKVWRNHGLWSVDDSQNSKDTAVENMSKME 165

Query: 64  NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELK 113
             F   +  ++ V  SVY K YFDLCALA+D  LY  F  L  ++A +L+
Sbjct: 166 KCFLELLEFNIHVSASVYAKYYFDLCALANDHDLYFLFSFLHKDKAQKLE 215


>gi|239745552 PREDICTED: cyclin Y-like 3 [Homo sapiens]
          Length = 351

 Score = 53.5 bits (127), Expect = 6e-08
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 19/110 (17%)

Query: 23  IYIERLESYADIDICPTKLEEDCLVTHL-------------------SCCGAMTMRLELG 63
           +YI+RL + A+ID+CPT  ++  L T L                   S   A+    ++ 
Sbjct: 106 VYIKRLLTSANIDLCPTNWKKIVLGTMLLASKVWRNHGLWSVDDSQNSKDTAVENMSKME 165

Query: 64  NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELK 113
             F   +  ++ V  SVY K YFDLCALA+D  LY  F  L  ++A +L+
Sbjct: 166 KCFLELLEFNIHVSASVYAKYYFDLCALANDHDLYFLFSFLHKDKAQKLE 215


>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence c isoform 2 [Homo sapiens]
          Length = 428

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 71  NNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLEDKDFYGTANKR 130
           N DV +    +  C   L A  H  S   PFC  +I + WE   + +     F+G A   
Sbjct: 312 NKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEI-KGWEAVSIYQ-----FHGQATAE 365

Query: 131 KRSLSSD 137
               SSD
Sbjct: 366 DSGNSSD 372


>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence c isoform 1 [Homo sapiens]
          Length = 474

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 71  NNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLEDKDFYGTANKR 130
           N DV +    +  C   L A  H  S   PFC  +I + WE   + +     F+G A   
Sbjct: 358 NKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEI-KGWEAVSIYQ-----FHGQATAE 411

Query: 131 KRSLSSD 137
               SSD
Sbjct: 412 DSGNSSD 418


>gi|93102379 low density lipoprotein-related protein 1B precursor
          [Homo sapiens]
          Length = 4599

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 29 ESYADIDICPTKLEEDCLVTHLSCCG 54
          +S   +D CP ++E  C + H++C G
Sbjct: 61 DSDESLDTCPEEVEIKCPLNHIACLG 86


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,384,542
Number of Sequences: 37866
Number of extensions: 216539
Number of successful extensions: 459
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 16
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press