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Search of human proteins with 169177621
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169177621 PREDICTED: similar to hCG1647409 [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169177621 PREDICTED: similar to hCG1647409 [Homo sapiens] 307 2e-84
gi|169179067 PREDICTED: similar to hCG1647409 [Homo sapiens] 307 2e-84
gi|169181261 PREDICTED: hypothetical protein LOC100132781 [Homo ... 307 2e-84
gi|239755288 PREDICTED: cyclin Y-like 2 [Homo sapiens] 101 3e-22
gi|239749780 PREDICTED: cyclin Y-like 2 [Homo sapiens] 101 3e-22
gi|239744040 PREDICTED: cyclin Y-like 2 [Homo sapiens] 101 3e-22
gi|214830655 cyclin Y-like 1 isoform 1 [Homo sapiens] 81 3e-16
gi|22749085 cyclin Y-like 1 isoform 2 [Homo sapiens] 81 3e-16
gi|32171247 cyclin Y isoform 1 [Homo sapiens] 72 1e-13
gi|190341110 cyclin Y isoform 2 [Homo sapiens] 72 1e-13
gi|239756576 PREDICTED: cyclin Y-like 3 [Homo sapiens] 54 6e-08
gi|239748884 PREDICTED: cyclin Y-like 3 [Homo sapiens] 54 6e-08
gi|239745552 PREDICTED: cyclin Y-like 3 [Homo sapiens] 54 6e-08
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 28 2.9
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 28 2.9
gi|93102379 low density lipoprotein-related protein 1B precursor... 27 5.0
>gi|169177621 PREDICTED: similar to hCG1647409 [Homo sapiens]
Length = 150
Score = 307 bits (787), Expect = 2e-84
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60
MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL
Sbjct: 1 MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60
Query: 61 ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120
ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED
Sbjct: 61 ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120
Query: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150
KDFYGTANKRKRSLSSDDLIDLQCLKAILS
Sbjct: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150
>gi|169179067 PREDICTED: similar to hCG1647409 [Homo sapiens]
Length = 150
Score = 307 bits (787), Expect = 2e-84
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60
MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL
Sbjct: 1 MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60
Query: 61 ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120
ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED
Sbjct: 61 ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120
Query: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150
KDFYGTANKRKRSLSSDDLIDLQCLKAILS
Sbjct: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150
>gi|169181261 PREDICTED: hypothetical protein LOC100132781 [Homo
sapiens]
Length = 150
Score = 307 bits (787), Expect = 2e-84
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60
MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL
Sbjct: 1 MPLAEMTIILVTKTGLYISMGTIYIERLESYADIDICPTKLEEDCLVTHLSCCGAMTMRL 60
Query: 61 ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120
ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED
Sbjct: 61 ELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLED 120
Query: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150
KDFYGTANKRKRSLSSDDLIDLQCLKAILS
Sbjct: 121 KDFYGTANKRKRSLSSDDLIDLQCLKAILS 150
>gi|239755288 PREDICTED: cyclin Y-like 2 [Homo sapiens]
Length = 362
Score = 101 bits (251), Expect = 3e-22
Identities = 69/156 (44%), Positives = 85/156 (54%), Gaps = 22/156 (14%)
Query: 14 TGLYISMGTIYIERLESYADIDICPT--------------KLEEDCLVTHLSCCG----- 54
T + + IYIERL SYADIDICPT K+ D V + C
Sbjct: 208 TAEFAIVSLIYIERLVSYADIDICPTNWKRIVLGAILLASKVWSDMAVWNEDYCKLFKNI 267
Query: 55 AMTMRLELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKV 114
+ EL QF IN + + SVY++ YFDL LAH++ LY P LLD ERAW+L+
Sbjct: 268 TVEEMNELERQFLKLINYNNSITNSVYSRFYFDLRTLAHNNGLYSPVYLLDRERAWKLEA 327
Query: 115 VSRLE-DKDFYGTANKRKRSLSSDDLIDLQCLKAIL 149
SR+E DK FY A + SLS+DDLI LQ KAIL
Sbjct: 328 FSRMEQDKVFYSAA--KNGSLSADDLIHLQRAKAIL 361
>gi|239749780 PREDICTED: cyclin Y-like 2 [Homo sapiens]
Length = 362
Score = 101 bits (251), Expect = 3e-22
Identities = 69/156 (44%), Positives = 85/156 (54%), Gaps = 22/156 (14%)
Query: 14 TGLYISMGTIYIERLESYADIDICPT--------------KLEEDCLVTHLSCCG----- 54
T + + IYIERL SYADIDICPT K+ D V + C
Sbjct: 208 TAEFAIVSLIYIERLVSYADIDICPTNWKRIVLGAILLASKVWSDMAVWNEDYCKLFKNI 267
Query: 55 AMTMRLELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKV 114
+ EL QF IN + + SVY++ YFDL LAH++ LY P LLD ERAW+L+
Sbjct: 268 TVEEMNELERQFLKLINYNNSITNSVYSRFYFDLRTLAHNNGLYSPVYLLDRERAWKLEA 327
Query: 115 VSRLE-DKDFYGTANKRKRSLSSDDLIDLQCLKAIL 149
SR+E DK FY A + SLS+DDLI LQ KAIL
Sbjct: 328 FSRMEQDKVFYSAA--KNGSLSADDLIHLQRAKAIL 361
>gi|239744040 PREDICTED: cyclin Y-like 2 [Homo sapiens]
Length = 362
Score = 101 bits (251), Expect = 3e-22
Identities = 69/156 (44%), Positives = 85/156 (54%), Gaps = 22/156 (14%)
Query: 14 TGLYISMGTIYIERLESYADIDICPT--------------KLEEDCLVTHLSCCG----- 54
T + + IYIERL SYADIDICPT K+ D V + C
Sbjct: 208 TAEFAIVSLIYIERLVSYADIDICPTNWKRIVLGAILLASKVWSDMAVWNEDYCKLFKNI 267
Query: 55 AMTMRLELGNQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKV 114
+ EL QF IN + + SVY++ YFDL LAH++ LY P LLD ERAW+L+
Sbjct: 268 TVEEMNELERQFLKLINYNNSITNSVYSRFYFDLRTLAHNNGLYSPVYLLDRERAWKLEA 327
Query: 115 VSRLE-DKDFYGTANKRKRSLSSDDLIDLQCLKAIL 149
SR+E DK FY A + SLS+DDLI LQ KAIL
Sbjct: 328 FSRMEQDKVFYSAA--KNGSLSADDLIHLQRAKAIL 361
>gi|214830655 cyclin Y-like 1 isoform 1 [Homo sapiens]
Length = 308
Score = 81.3 bits (199), Expect = 3e-16
Identities = 57/148 (38%), Positives = 80/148 (54%), Gaps = 22/148 (14%)
Query: 23 IYIERLESYADIDICPT--------------KLEEDCLVTHLSCCGAMTMRL-----ELG 63
+Y+ERL +YA+IDICPT K+ +D V ++ C + E+
Sbjct: 163 VYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEME 222
Query: 64 NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRL-EDKD 122
F + +++VP SVY K YFDL +LA D++L F L ERA L+ +SRL EDKD
Sbjct: 223 RHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKD 282
Query: 123 FYGTANKRKRSLSSDDLIDLQCLKAILS 150
A +RS S+D+ I +Q KAILS
Sbjct: 283 LCRAA--MRRSFSADNFIGIQRSKAILS 308
>gi|22749085 cyclin Y-like 1 isoform 2 [Homo sapiens]
Length = 289
Score = 81.3 bits (199), Expect = 3e-16
Identities = 57/148 (38%), Positives = 80/148 (54%), Gaps = 22/148 (14%)
Query: 23 IYIERLESYADIDICPT--------------KLEEDCLVTHLSCCGAMTMRL-----ELG 63
+Y+ERL +YA+IDICPT K+ +D V ++ C + E+
Sbjct: 144 VYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEME 203
Query: 64 NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRL-EDKD 122
F + +++VP SVY K YFDL +LA D++L F L ERA L+ +SRL EDKD
Sbjct: 204 RHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKD 263
Query: 123 FYGTANKRKRSLSSDDLIDLQCLKAILS 150
A +RS S+D+ I +Q KAILS
Sbjct: 264 LCRAA--MRRSFSADNFIGIQRSKAILS 289
>gi|32171247 cyclin Y isoform 1 [Homo sapiens]
Length = 341
Score = 72.4 bits (176), Expect = 1e-13
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 20/148 (13%)
Query: 23 IYIERLESYADIDICP--------------TKLEEDCLVTHLSCCGAMTMRL-----ELG 63
+Y+ERL +YA+IDICP +K+ +D V ++ C + EL
Sbjct: 194 VYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELE 253
Query: 64 NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRL-EDKD 122
QF + +++VP SVY K YFDL +LA ++L P L ERA +L+ +SRL EDK
Sbjct: 254 RQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKY 313
Query: 123 FYGTANKRKRSLSSDDLIDLQCLKAILS 150
+ RKRS S+D+L + AI+S
Sbjct: 314 KDLRRSARKRSASADNLTLPRWSPAIIS 341
>gi|190341110 cyclin Y isoform 2 [Homo sapiens]
Length = 287
Score = 72.4 bits (176), Expect = 1e-13
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 20/148 (13%)
Query: 23 IYIERLESYADIDICP--------------TKLEEDCLVTHLSCCGAMTMRL-----ELG 63
+Y+ERL +YA+IDICP +K+ +D V ++ C + EL
Sbjct: 140 VYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELE 199
Query: 64 NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRL-EDKD 122
QF + +++VP SVY K YFDL +LA ++L P L ERA +L+ +SRL EDK
Sbjct: 200 RQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKY 259
Query: 123 FYGTANKRKRSLSSDDLIDLQCLKAILS 150
+ RKRS S+D+L + AI+S
Sbjct: 260 KDLRRSARKRSASADNLTLPRWSPAIIS 287
>gi|239756576 PREDICTED: cyclin Y-like 3 [Homo sapiens]
Length = 351
Score = 53.5 bits (127), Expect = 6e-08
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 23 IYIERLESYADIDICPTKLEEDCLVTHL-------------------SCCGAMTMRLELG 63
+YI+RL + A+ID+CPT ++ L T L S A+ ++
Sbjct: 106 VYIKRLLTSANIDLCPTNWKKIVLGTMLLASKVWRNHGLWSVDDSQNSKDTAVENMSKME 165
Query: 64 NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELK 113
F + ++ V SVY K YFDLCALA+D LY F L ++A +L+
Sbjct: 166 KCFLELLEFNIHVSASVYAKYYFDLCALANDHDLYFLFSFLHKDKAQKLE 215
>gi|239748884 PREDICTED: cyclin Y-like 3 [Homo sapiens]
Length = 351
Score = 53.5 bits (127), Expect = 6e-08
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 23 IYIERLESYADIDICPTKLEEDCLVTHL-------------------SCCGAMTMRLELG 63
+YI+RL + A+ID+CPT ++ L T L S A+ ++
Sbjct: 106 VYIKRLLTSANIDLCPTNWKKIVLGTMLLASKVWRNHGLWSVDDSQNSKDTAVENMSKME 165
Query: 64 NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELK 113
F + ++ V SVY K YFDLCALA+D LY F L ++A +L+
Sbjct: 166 KCFLELLEFNIHVSASVYAKYYFDLCALANDHDLYFLFSFLHKDKAQKLE 215
>gi|239745552 PREDICTED: cyclin Y-like 3 [Homo sapiens]
Length = 351
Score = 53.5 bits (127), Expect = 6e-08
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 23 IYIERLESYADIDICPTKLEEDCLVTHL-------------------SCCGAMTMRLELG 63
+YI+RL + A+ID+CPT ++ L T L S A+ ++
Sbjct: 106 VYIKRLLTSANIDLCPTNWKKIVLGTMLLASKVWRNHGLWSVDDSQNSKDTAVENMSKME 165
Query: 64 NQFSHFINNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELK 113
F + ++ V SVY K YFDLCALA+D LY F L ++A +L+
Sbjct: 166 KCFLELLEFNIHVSASVYAKYYFDLCALANDHDLYFLFSFLHKDKAQKLE 215
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 28.1 bits (61), Expect = 2.9
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 71 NNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLEDKDFYGTANKR 130
N DV + + C L A H S PFC +I + WE + + F+G A
Sbjct: 312 NKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEI-KGWEAVSIYQ-----FHGQATAE 365
Query: 131 KRSLSSD 137
SSD
Sbjct: 366 DSGNSSD 372
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 28.1 bits (61), Expect = 2.9
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 71 NNDVDVPGSVYTKCYFDLCALAHDSSLYLPFCLLDIERAWELKVVSRLEDKDFYGTANKR 130
N DV + + C L A H S PFC +I + WE + + F+G A
Sbjct: 358 NKDVKIEPCGHLLCSCCLAAWQHSDSQTCPFCRCEI-KGWEAVSIYQ-----FHGQATAE 411
Query: 131 KRSLSSD 137
SSD
Sbjct: 412 DSGNSSD 418
>gi|93102379 low density lipoprotein-related protein 1B precursor
[Homo sapiens]
Length = 4599
Score = 27.3 bits (59), Expect = 5.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 29 ESYADIDICPTKLEEDCLVTHLSCCG 54
+S +D CP ++E C + H++C G
Sbjct: 61 DSDESLDTCPEEVEIKCPLNHIACLG 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,384,542
Number of Sequences: 37866
Number of extensions: 216539
Number of successful extensions: 459
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 16
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.